Wall clock time and date at job start Mon Mar 30 2020 06:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47475 * 2 1 4 4 C 1.53001 * 109.47149 * 120.00069 * 2 1 3 5 5 H 1.09003 * 109.46918 * 54.03363 * 4 2 1 6 6 N 1.46900 * 109.46903 * 294.03300 * 4 2 1 7 7 C 1.46901 * 110.99783 * 151.57465 * 6 4 2 8 8 H 1.09000 * 109.46915 * 328.11787 * 7 6 4 9 9 C 1.52999 * 109.47252 * 88.11968 * 7 6 4 10 10 C 1.53000 * 109.47034 * 208.11843 * 7 6 4 11 11 C 1.50702 * 109.46943 * 64.13799 * 10 7 6 12 12 H 1.08001 * 120.00139 * 355.50050 * 11 10 7 13 13 C 1.37878 * 120.00326 * 175.21676 * 11 10 7 14 14 N 1.31520 * 119.99623 * 0.28272 * 13 11 10 15 15 Si 1.86793 * 120.00457 * 180.27573 * 13 11 10 16 16 H 1.48501 * 109.46980 * 60.00083 * 15 13 11 17 17 H 1.48497 * 109.47398 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47177 * 300.00436 * 15 13 11 19 19 C 1.50698 * 109.47078 * 174.03033 * 4 2 1 20 20 C 1.33386 * 125.20327 * 259.99694 * 19 4 2 21 21 C 1.38428 * 114.92095 * 179.97438 * 20 19 4 22 22 C 1.33391 * 114.91928 * 0.02562 * 21 20 19 23 23 S 1.75883 * 109.59442 * 359.75575 * 22 21 20 24 24 H 1.08995 * 109.47577 * 185.70163 * 1 2 3 25 25 H 1.08997 * 109.46762 * 305.70760 * 1 2 3 26 26 H 1.09004 * 109.46804 * 65.69622 * 1 2 3 27 27 H 1.09005 * 109.47164 * 239.99751 * 2 1 3 28 28 H 1.09005 * 109.47516 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47171 * 300.00005 * 3 2 1 30 30 H 1.08997 * 109.47406 * 59.99652 * 3 2 1 31 31 H 1.00899 * 111.00194 * 27.61431 * 6 4 2 32 32 H 1.09005 * 109.46881 * 60.00062 * 9 7 6 33 33 H 1.08995 * 109.47170 * 179.97438 * 9 7 6 34 34 H 1.08998 * 109.47225 * 299.99921 * 9 7 6 35 35 H 1.08999 * 109.47179 * 304.14225 * 10 7 6 36 36 H 1.08992 * 109.47510 * 184.13627 * 10 7 6 37 37 H 0.96998 * 120.00005 * 180.02562 * 14 13 11 38 38 H 1.07999 * 122.54030 * 0.02562 * 20 19 4 39 39 H 1.07999 * 122.54178 * 179.97438 * 21 20 19 40 40 H 1.07997 * 125.19839 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5920 -1.7135 1.3042 6 7 1.6714 0.0494 2.4443 7 6 1.5106 -0.8308 3.6094 8 1 1.1434 -1.8035 3.2819 9 6 2.8607 -1.0042 4.3079 10 6 0.5083 -0.2090 4.5839 11 6 -0.8470 -0.1318 3.9294 12 1 -0.9649 -0.4226 2.8960 13 6 -1.9375 0.3043 4.6516 14 7 -1.7939 0.6584 5.9100 15 14 -3.6188 0.3926 3.8426 16 1 -4.0154 -0.9603 3.3761 17 1 -4.6154 0.8898 4.8249 18 1 -3.5624 1.3191 2.6833 19 6 3.5397 -0.8505 1.1776 20 6 4.2000 -1.9485 0.8066 21 6 5.5793 -1.8311 0.8171 22 6 6.0390 -0.6380 1.1971 23 16 4.6870 0.4255 1.5639 24 1 -0.3634 -1.0225 0.1021 25 1 -0.3633 0.5998 0.8345 26 1 -0.3633 0.4230 -0.9366 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 0.8356 0.5907 2.2819 32 1 3.2279 -0.0314 4.6353 33 1 2.7413 -1.6569 5.1726 34 1 3.5748 -1.4472 3.6137 35 1 0.8388 0.7939 4.8542 36 1 0.4440 -0.8245 5.4810 37 1 -2.5611 0.9649 6.4182 38 1 3.6967 -2.8597 0.5190 39 1 6.2336 -2.6443 0.5394 40 1 7.0818 -0.3656 1.2654 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695835929.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:19 Heat of formation + Delta-G solvation = 11.163337 kcal Electronic energy + Delta-G solvation = -19023.386210 eV Core-core repulsion = 16349.919480 eV Total energy + Delta-G solvation = -2673.466730 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.68035 -36.77190 -34.73422 -32.46182 -30.33729 -28.68502 -27.31735 -26.88246 -24.99336 -23.00232 -22.70702 -19.71422 -19.51548 -18.75918 -16.76991 -16.33379 -15.47897 -15.23619 -14.74061 -14.35479 -13.79601 -13.73480 -13.10382 -12.73168 -12.51670 -12.42150 -12.05779 -11.91320 -11.77999 -11.67990 -11.46161 -11.23638 -11.09484 -10.78296 -10.72670 -10.57074 -10.45594 -10.42399 -10.30946 -10.12856 -9.22151 -9.07765 -8.40524 -8.29458 -8.05975 -7.73042 -6.03543 -4.06810 1.30820 1.99398 2.43134 2.98990 3.28933 3.34691 3.35766 4.41547 4.74159 5.02819 5.11942 5.24811 5.28250 5.36372 5.49685 5.70789 5.79117 5.82510 5.91186 5.97855 6.05258 6.16726 6.19126 6.29777 6.30118 6.31953 6.39386 6.54090 6.57148 6.60772 6.68030 6.75110 6.97213 7.00314 7.52298 7.63177 7.96215 8.03881 8.26538 8.36113 8.99271 9.57316 11.07310 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.025300 B = 0.005905 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.437761 B = 4740.364149 C = 5337.221013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.092 4.092 3 C -0.150 4.150 4 C 0.152 3.848 5 H 0.060 0.940 6 N -0.675 5.675 7 C 0.090 3.910 8 H 0.031 0.969 9 C -0.136 4.136 10 C 0.020 3.980 11 C -0.524 4.524 12 H 0.053 0.947 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.887 3.113 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.130 4.130 20 C -0.167 4.167 21 C -0.132 4.132 22 C -0.253 4.253 23 S 0.151 5.849 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.361 0.639 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.022 0.978 36 H 0.024 0.976 37 H 0.261 0.739 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.476 -1.969 -11.461 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.111 4.111 3 C -0.208 4.208 4 C 0.040 3.960 5 H 0.077 0.923 6 N -0.311 5.311 7 C -0.019 4.019 8 H 0.049 0.951 9 C -0.194 4.194 10 C -0.018 4.018 11 C -0.562 4.562 12 H 0.071 0.929 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.715 3.285 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.249 4.249 20 C -0.197 4.197 21 C -0.163 4.163 22 C -0.388 4.388 23 S 0.416 5.584 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.186 0.814 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.885 -0.213 -10.642 15.955 hybrid contribution -1.605 -2.036 -0.983 2.772 sum 10.280 -2.249 -11.625 15.681 Atomic orbital electron populations 1.21933 0.94566 1.02307 1.02331 1.21265 0.95905 0.97134 0.96834 1.21925 1.01366 0.95451 1.02017 1.20105 0.87514 0.96837 0.91563 0.92256 1.60616 1.42964 1.25484 1.02074 1.21690 0.94967 0.93939 0.91297 0.95126 1.21860 0.97541 1.00964 0.99055 1.19302 0.91981 0.96472 0.94025 1.21146 0.93415 1.44223 0.97465 0.92919 1.24974 0.98870 0.95349 0.94786 1.69951 1.30708 1.44179 1.08086 0.86744 0.84196 0.78365 0.79231 1.20376 1.21299 1.20152 1.24779 0.99313 0.96572 1.04249 1.20013 0.93718 0.99192 1.06805 1.19994 0.95046 0.97695 1.03592 1.25755 1.03082 0.99135 1.10871 1.84409 0.94169 1.14683 1.65153 0.92723 0.91190 0.92714 0.91275 0.92250 0.93284 0.91199 0.81431 0.92722 0.93735 0.94098 0.95965 0.95769 0.92910 0.85180 0.85382 0.82847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.94 37.16 0.33 -1.88 16 2 C -0.09 -1.28 2.65 -90.62 -0.24 -1.52 16 3 C -0.15 -2.03 8.60 37.16 0.32 -1.71 16 4 C 0.15 2.39 2.17 -68.86 -0.15 2.24 16 5 H 0.06 0.99 7.31 -51.93 -0.38 0.61 16 6 N -0.67 -12.31 5.20 -100.95 -0.53 -12.84 16 7 C 0.09 1.85 2.61 -67.71 -0.18 1.67 16 8 H 0.03 0.65 7.33 -51.93 -0.38 0.27 16 9 C -0.14 -2.53 9.26 37.16 0.34 -2.19 16 10 C 0.02 0.49 4.56 -27.88 -0.13 0.36 16 11 C -0.52 -13.94 8.17 -34.44 -0.28 -14.22 16 12 H 0.05 1.34 7.28 -52.49 -0.38 0.96 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 15 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C -0.13 -1.92 3.26 -36.01 -0.12 -2.04 16 20 C -0.17 -2.29 10.04 -41.21 -0.41 -2.70 16 21 C -0.13 -1.65 10.18 -41.21 -0.42 -2.07 16 22 C -0.25 -3.14 11.23 29.04 0.33 -2.81 16 23 S 0.15 2.12 20.77 -107.50 -2.23 -0.11 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.07 1.15 6.59 -51.93 -0.34 0.80 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.79 5.53 -51.93 -0.29 0.50 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.05 7.02 -51.93 -0.36 0.68 16 31 H 0.36 7.11 4.28 -39.29 -0.17 6.94 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.04 0.71 6.54 -51.93 -0.34 0.37 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -27.99 326.75 -9.25 -37.24 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.43 Total: 5.44 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: -0.70 Total: -25.25 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.21 Total: -38.25 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.23 Total: -0.11 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.99 -9.25 -37.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835929.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.403 kcal (2) G-P(sol) polarization free energy of solvation -27.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds