Wall clock time and date at job start Mon Mar 30 2020 06:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47475 * 2 1 4 4 C 1.53001 * 109.47149 * 120.00069 * 2 1 3 5 5 H 1.09003 * 109.46918 * 54.03363 * 4 2 1 6 6 N 1.46900 * 109.46903 * 294.03300 * 4 2 1 7 7 C 1.46901 * 110.99783 * 151.57465 * 6 4 2 8 8 H 1.09000 * 109.46915 * 328.11787 * 7 6 4 9 9 C 1.52999 * 109.47252 * 88.11968 * 7 6 4 10 10 C 1.53000 * 109.47034 * 208.11843 * 7 6 4 11 11 C 1.50702 * 109.46943 * 64.13799 * 10 7 6 12 12 H 1.08001 * 120.00139 * 355.50050 * 11 10 7 13 13 C 1.37878 * 120.00326 * 175.21676 * 11 10 7 14 14 N 1.31520 * 119.99623 * 0.28272 * 13 11 10 15 15 Si 1.86793 * 120.00457 * 180.27573 * 13 11 10 16 16 H 1.48501 * 109.46980 * 60.00083 * 15 13 11 17 17 H 1.48497 * 109.47398 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47177 * 300.00436 * 15 13 11 19 19 C 1.50698 * 109.47078 * 174.03033 * 4 2 1 20 20 C 1.33386 * 125.20327 * 259.99694 * 19 4 2 21 21 C 1.38428 * 114.92095 * 179.97438 * 20 19 4 22 22 C 1.33391 * 114.91928 * 0.02562 * 21 20 19 23 23 S 1.75883 * 109.59442 * 359.75575 * 22 21 20 24 24 H 1.08995 * 109.47577 * 185.70163 * 1 2 3 25 25 H 1.08997 * 109.46762 * 305.70760 * 1 2 3 26 26 H 1.09004 * 109.46804 * 65.69622 * 1 2 3 27 27 H 1.09005 * 109.47164 * 239.99751 * 2 1 3 28 28 H 1.09005 * 109.47516 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47171 * 300.00005 * 3 2 1 30 30 H 1.08997 * 109.47406 * 59.99652 * 3 2 1 31 31 H 1.00899 * 111.00194 * 27.61431 * 6 4 2 32 32 H 1.09005 * 109.46881 * 60.00062 * 9 7 6 33 33 H 1.08995 * 109.47170 * 179.97438 * 9 7 6 34 34 H 1.08998 * 109.47225 * 299.99921 * 9 7 6 35 35 H 1.08999 * 109.47179 * 304.14225 * 10 7 6 36 36 H 1.08992 * 109.47510 * 184.13627 * 10 7 6 37 37 H 0.96998 * 120.00005 * 180.02562 * 14 13 11 38 38 H 1.07999 * 122.54030 * 0.02562 * 20 19 4 39 39 H 1.07999 * 122.54178 * 179.97438 * 21 20 19 40 40 H 1.07997 * 125.19839 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5920 -1.7135 1.3042 6 7 1.6714 0.0494 2.4443 7 6 1.5106 -0.8308 3.6094 8 1 1.1434 -1.8035 3.2819 9 6 2.8607 -1.0042 4.3079 10 6 0.5083 -0.2090 4.5839 11 6 -0.8470 -0.1318 3.9294 12 1 -0.9649 -0.4226 2.8960 13 6 -1.9375 0.3043 4.6516 14 7 -1.7939 0.6584 5.9100 15 14 -3.6188 0.3926 3.8426 16 1 -4.0154 -0.9603 3.3761 17 1 -4.6154 0.8898 4.8249 18 1 -3.5624 1.3191 2.6833 19 6 3.5397 -0.8505 1.1776 20 6 4.2000 -1.9485 0.8066 21 6 5.5793 -1.8311 0.8171 22 6 6.0390 -0.6380 1.1971 23 16 4.6870 0.4255 1.5639 24 1 -0.3634 -1.0225 0.1021 25 1 -0.3633 0.5998 0.8345 26 1 -0.3633 0.4230 -0.9366 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 0.8356 0.5907 2.2819 32 1 3.2279 -0.0314 4.6353 33 1 2.7413 -1.6569 5.1726 34 1 3.5748 -1.4472 3.6137 35 1 0.8388 0.7939 4.8542 36 1 0.4440 -0.8245 5.4810 37 1 -2.5611 0.9649 6.4182 38 1 3.6967 -2.8597 0.5190 39 1 6.2336 -2.6443 0.5394 40 1 7.0818 -0.3656 1.2654 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695835929.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:18 Heat of formation + Delta-G solvation = -3.230836 kcal Electronic energy + Delta-G solvation = -19024.010388 eV Core-core repulsion = 16349.919480 eV Total energy + Delta-G solvation = -2674.090908 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.93570 -37.93275 -36.28873 -34.43127 -31.64259 -30.01271 -29.22618 -28.00016 -26.20791 -24.94923 -23.79699 -21.31659 -20.73296 -19.83184 -18.47324 -17.91037 -16.98649 -16.39791 -16.20557 -15.97050 -15.19308 -14.95419 -14.50009 -14.25118 -13.67493 -13.58952 -13.53764 -13.33981 -13.18336 -13.12094 -12.86011 -12.72302 -12.60870 -12.51499 -12.37966 -12.14712 -11.77149 -11.68330 -11.66297 -11.36362 -11.12576 -10.96592 -10.55142 -9.36309 -9.29743 -9.05668 -8.17154 -6.27129 0.27458 0.95028 1.40379 1.40454 1.41890 1.49312 1.98501 2.41156 3.14298 3.41430 3.86041 3.95710 4.11656 4.32232 4.35517 4.40122 4.58310 4.65423 4.71978 4.76561 4.82056 4.82957 4.87511 4.98049 5.04970 5.09308 5.19433 5.24494 5.31646 5.35519 5.40055 5.48493 5.52529 5.56485 5.62129 5.74170 5.85872 6.23019 6.41454 6.67947 6.87776 7.41463 8.94454 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.025300 B = 0.005905 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.437761 B = 4740.364149 C = 5337.221013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 C -0.146 4.146 4 C 0.154 3.846 5 H 0.050 0.950 6 N -0.672 5.672 7 C 0.103 3.897 8 H 0.023 0.977 9 C -0.125 4.125 10 C 0.028 3.972 11 C -0.529 4.529 12 H 0.063 0.937 13 C 0.006 3.994 14 N -0.931 5.931 15 Si 0.955 3.045 16 H -0.270 1.270 17 H -0.288 1.288 18 H -0.264 1.264 19 C -0.152 4.152 20 C -0.163 4.163 21 C -0.138 4.138 22 C -0.243 4.243 23 S 0.124 5.876 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.351 0.649 32 H 0.048 0.952 33 H 0.044 0.956 34 H 0.055 0.945 35 H -0.005 1.005 36 H -0.006 1.006 37 H 0.262 0.738 38 H 0.141 0.859 39 H 0.155 0.845 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.257 -2.668 -13.650 18.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 C -0.204 4.204 4 C 0.042 3.958 5 H 0.068 0.932 6 N -0.307 5.307 7 C -0.007 4.007 8 H 0.041 0.959 9 C -0.183 4.183 10 C -0.010 4.010 11 C -0.567 4.567 12 H 0.081 0.919 13 C -0.192 4.192 14 N -0.572 5.572 15 Si 0.780 3.220 16 H -0.195 1.195 17 H -0.214 1.214 18 H -0.188 1.188 19 C -0.270 4.270 20 C -0.194 4.194 21 C -0.168 4.168 22 C -0.378 4.378 23 S 0.388 5.612 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.174 0.826 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.013 0.987 36 H 0.012 0.988 37 H 0.070 0.930 38 H 0.159 0.841 39 H 0.172 0.828 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 12.685 -0.920 -12.852 18.081 hybrid contribution -1.761 -1.843 -0.312 2.569 sum 10.923 -2.764 -13.164 17.328 Atomic orbital electron populations 1.21908 0.94950 1.01715 1.02331 1.21246 0.95478 0.97302 0.96506 1.21878 1.01490 0.95138 1.01844 1.20110 0.88555 0.96074 0.91061 0.93203 1.60623 1.42180 1.25251 1.02631 1.21431 0.94634 0.93297 0.91333 0.95871 1.21736 0.96603 1.00774 0.99150 1.19147 0.93173 0.94611 0.94025 1.21495 0.94019 1.43333 0.97890 0.91930 1.25853 1.03033 0.95063 0.95269 1.70096 1.31833 1.45521 1.09716 0.85652 0.79157 0.78780 0.78403 1.19546 1.21370 1.18839 1.24622 0.98650 0.97414 1.06332 1.20288 0.94500 0.99057 1.05590 1.20267 0.94784 0.98490 1.03300 1.26063 1.03616 0.98487 1.09636 1.84509 0.95344 1.15514 1.65846 0.93064 0.93681 0.90661 0.89535 0.92017 0.91584 0.93192 0.82552 0.93295 0.93673 0.92605 0.98702 0.98805 0.92969 0.84127 0.82780 0.80390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.16 8.94 71.98 0.64 -3.52 16 2 C -0.09 -2.27 2.65 -10.79 -0.03 -2.30 16 3 C -0.15 -3.78 8.60 71.98 0.62 -3.16 16 4 C 0.15 4.70 2.17 44.17 0.10 4.80 16 5 H 0.05 1.62 7.31 -2.39 -0.02 1.60 16 6 N -0.67 -24.71 5.20 -473.31 -2.46 -27.18 16 7 C 0.10 4.28 2.61 44.91 0.12 4.39 16 8 H 0.02 1.00 7.33 -2.39 -0.02 0.98 16 9 C -0.12 -4.64 9.26 71.98 0.67 -3.97 16 10 C 0.03 1.45 4.56 29.85 0.14 1.59 16 11 C -0.53 -28.69 8.17 25.60 0.21 -28.48 16 12 H 0.06 3.20 7.28 -2.91 -0.02 3.18 16 13 C 0.01 0.33 5.46 84.65 0.46 0.79 16 14 N -0.93 -56.11 13.29 21.45 0.28 -55.83 16 15 Si 0.95 43.37 29.54 68.60 2.03 45.39 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 18 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 19 C -0.15 -4.24 3.26 24.59 0.08 -4.16 16 20 C -0.16 -4.07 10.04 21.22 0.21 -3.85 16 21 C -0.14 -2.99 10.18 21.22 0.22 -2.77 16 22 C -0.24 -5.31 11.23 66.72 0.75 -4.56 16 23 S 0.12 3.29 20.77 -56.49 -1.17 2.12 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 25 H 0.04 1.46 6.59 -2.39 -0.02 1.44 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.06 1.57 5.53 -2.38 -0.01 1.56 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.49 7.02 -2.39 -0.02 1.47 16 31 H 0.35 14.12 4.28 -89.69 -0.38 13.74 16 32 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.05 1.90 6.54 -2.39 -0.02 1.88 16 35 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 38 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 39 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 40 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -60.48 326.75 3.48 -57.00 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.62 Total: 23.70 kcal Atomic # 6 Polarization: -49.38 SS G_CDS: 4.18 Total: -45.21 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -2.18 Total: -83.00 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.17 Total: 2.12 kcal Total: -60.48 3.48 -57.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835929.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.770 kcal (2) G-P(sol) polarization free energy of solvation -60.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds