Wall clock time and date at job start Mon Mar 30 2020 06:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47163 * 2 1 4 4 C 1.53002 * 109.46780 * 120.00128 * 2 1 3 5 5 H 1.08997 * 109.47096 * 304.21045 * 4 2 1 6 6 N 1.46892 * 109.47250 * 64.21285 * 4 2 1 7 7 C 1.46902 * 111.00238 * 207.16083 * 6 4 2 8 8 H 1.09005 * 109.46277 * 322.85687 * 7 6 4 9 9 C 1.52991 * 109.47280 * 82.85585 * 7 6 4 10 10 C 1.52996 * 109.47252 * 202.86020 * 7 6 4 11 11 C 1.50699 * 109.47230 * 64.99597 * 10 7 6 12 12 H 1.08004 * 120.00359 * 0.02562 * 11 10 7 13 13 C 1.37883 * 119.99808 * 179.97438 * 11 10 7 14 14 N 1.31519 * 119.99895 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00035 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46947 * 90.00058 * 15 13 11 17 17 H 1.48499 * 109.46869 * 209.99563 * 15 13 11 18 18 H 1.48502 * 109.47363 * 329.99653 * 15 13 11 19 19 C 1.50703 * 109.46578 * 184.21395 * 4 2 1 20 20 C 1.33383 * 125.20809 * 99.72523 * 19 4 2 21 21 C 1.38425 * 114.92379 * 179.85686 * 20 19 4 22 22 C 1.33381 * 114.91888 * 0.42546 * 21 20 19 23 23 S 1.75887 * 109.59787 * 359.77116 * 22 21 20 24 24 H 1.09001 * 109.47225 * 299.43758 * 1 2 3 25 25 H 1.09003 * 109.47395 * 59.43313 * 1 2 3 26 26 H 1.08997 * 109.47810 * 179.43545 * 1 2 3 27 27 H 1.09003 * 109.47154 * 240.00242 * 2 1 3 28 28 H 1.09000 * 109.46877 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47060 * 299.99940 * 3 2 1 30 30 H 1.09003 * 109.46888 * 60.00079 * 3 2 1 31 31 H 1.00907 * 111.00131 * 331.11205 * 6 4 2 32 32 H 1.09007 * 109.47392 * 295.19975 * 9 7 6 33 33 H 1.09005 * 109.47326 * 55.19902 * 9 7 6 34 34 H 1.08997 * 109.47265 * 175.20372 * 9 7 6 35 35 H 1.09000 * 109.47369 * 184.99725 * 10 7 6 36 36 H 1.09002 * 109.47243 * 304.99438 * 10 7 6 37 37 H 0.96994 * 120.00235 * 180.02562 * 14 13 11 38 38 H 1.08001 * 122.53787 * 0.02562 * 20 19 4 39 39 H 1.07999 * 122.53631 * 180.19411 * 21 20 19 40 40 H 1.08004 * 125.20457 * 179.79546 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6162 -0.2529 2.1376 6 7 1.6351 -2.1325 1.1995 7 6 1.5087 -2.6920 2.5518 8 1 2.2888 -2.2777 3.1907 9 6 0.1363 -2.3345 3.1256 10 6 1.6550 -4.2137 2.4899 11 6 3.0497 -4.5665 2.0411 12 1 3.7609 -3.7836 1.8224 13 6 3.4182 -5.8887 1.9108 14 7 4.6352 -6.1966 1.5186 15 14 2.1884 -7.2428 2.2898 16 1 1.4372 -7.5886 1.0564 17 1 2.9103 -8.4432 2.7827 18 1 1.2402 -6.7729 3.3316 19 6 3.5433 -0.6315 1.3025 20 6 4.2362 0.2330 2.0453 21 6 5.6118 0.1264 1.9335 22 6 6.0359 -0.8186 1.0933 23 16 4.6526 -1.6459 0.3891 24 1 -0.3634 0.5051 0.8950 25 1 -0.3634 0.5226 -0.8849 26 1 -0.3634 -1.0275 -0.0101 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.7771 -2.2444 0.6802 32 1 0.0645 -1.2539 3.2494 33 1 -0.6427 -2.6745 2.4430 34 1 0.0091 -2.8202 4.0930 35 1 1.4733 -4.6367 3.4779 36 1 0.9320 -4.6197 1.7824 37 1 4.8943 -7.1268 1.4266 38 1 3.7601 0.9592 2.6874 39 1 6.2902 0.7630 2.4822 40 1 7.0705 -1.0421 0.8784 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695835931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:24 Heat of formation + Delta-G solvation = 1.297768 kcal Electronic energy + Delta-G solvation = -19036.344169 eV Core-core repulsion = 16362.449635 eV Total energy + Delta-G solvation = -2673.894533 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.89215 -37.89766 -36.23893 -34.33157 -31.86039 -30.40766 -29.26870 -27.69751 -26.03115 -24.52826 -23.59335 -21.54578 -20.75451 -19.98830 -18.63090 -17.81657 -16.90606 -16.43274 -16.03703 -15.83073 -15.04787 -14.84200 -14.46528 -14.05943 -14.00375 -13.83959 -13.41771 -13.37119 -13.34090 -13.13277 -13.03463 -12.78672 -12.60475 -12.49441 -12.02043 -11.82947 -11.71435 -11.58397 -11.50965 -11.35561 -11.20562 -10.98872 -10.57129 -9.32302 -9.11320 -8.97941 -8.03945 -6.01152 0.34590 1.04794 1.38595 1.40210 1.49652 1.51062 2.02788 2.49209 3.24657 3.40748 3.88479 4.00155 4.11818 4.27440 4.35435 4.44046 4.47206 4.57238 4.61493 4.78839 4.81398 4.84270 4.88042 4.97358 5.03742 5.08233 5.19651 5.22652 5.27326 5.30666 5.37636 5.48027 5.48473 5.56040 5.60780 5.79949 5.87005 6.39649 6.65200 6.79397 7.15003 7.58510 9.11263 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.007740 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.032463 B = 3616.759550 C = 4662.405218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.138 4.138 4 C 0.164 3.836 5 H 0.066 0.934 6 N -0.678 5.678 7 C 0.108 3.892 8 H 0.049 0.951 9 C -0.171 4.171 10 C -0.005 4.005 11 C -0.490 4.490 12 H 0.072 0.928 13 C -0.001 4.001 14 N -0.955 5.955 15 Si 0.931 3.069 16 H -0.277 1.277 17 H -0.295 1.295 18 H -0.252 1.252 19 C -0.150 4.150 20 C -0.164 4.164 21 C -0.138 4.138 22 C -0.257 4.257 23 S 0.115 5.885 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.344 0.656 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.013 0.987 36 H 0.012 0.988 37 H 0.255 0.745 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.531 16.543 -0.846 18.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.195 4.195 4 C 0.052 3.948 5 H 0.083 0.917 6 N -0.311 5.311 7 C -0.002 4.002 8 H 0.067 0.933 9 C -0.230 4.230 10 C -0.042 4.042 11 C -0.529 4.529 12 H 0.090 0.910 13 C -0.195 4.195 14 N -0.598 5.598 15 Si 0.758 3.242 16 H -0.203 1.203 17 H -0.222 1.222 18 H -0.176 1.176 19 C -0.269 4.269 20 C -0.195 4.195 21 C -0.169 4.169 22 C -0.393 4.393 23 S 0.381 5.619 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.166 0.834 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.031 0.969 36 H 0.030 0.970 37 H 0.064 0.936 38 H 0.169 0.831 39 H 0.173 0.827 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.971 14.964 -2.021 16.631 hybrid contribution -0.359 0.123 1.369 1.421 sum -7.330 15.087 -0.652 16.786 Atomic orbital electron populations 1.21857 0.93406 1.01953 1.02929 1.21246 0.96739 0.96798 0.96283 1.21765 1.00891 0.94431 1.02452 1.20027 0.87382 0.88839 0.98504 0.91674 1.60339 1.39380 1.15177 1.16250 1.21289 0.95316 0.95059 0.88541 0.93307 1.22449 0.97294 1.01544 1.01720 1.19590 0.95710 0.93539 0.95401 1.21724 0.97768 0.92747 1.40616 0.91017 1.25813 0.96451 1.01127 0.96159 1.70080 1.20362 1.17896 1.51488 0.85946 0.80005 0.79164 0.79105 1.20280 1.22191 1.17612 1.24825 0.99496 0.99448 1.03157 1.20208 0.93581 1.02520 1.03148 1.20288 0.95835 1.00128 1.00697 1.25952 1.03174 1.03045 1.07118 1.85235 0.96623 1.35747 1.44329 0.91761 0.91003 0.92819 0.92060 0.93450 0.91502 0.91770 0.83397 0.91709 0.91937 0.92294 0.96926 0.97003 0.93614 0.83113 0.82706 0.81746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.01 71.98 0.65 -2.02 16 2 C -0.09 -2.14 2.61 -10.79 -0.03 -2.17 16 3 C -0.14 -2.76 8.77 71.98 0.63 -2.13 16 4 C 0.16 4.74 1.87 44.17 0.08 4.82 16 5 H 0.07 1.75 6.98 -2.39 -0.02 1.73 16 6 N -0.68 -23.40 5.53 -473.33 -2.62 -26.02 16 7 C 0.11 4.00 2.35 44.91 0.11 4.11 16 8 H 0.05 2.01 7.74 -2.38 -0.02 2.00 16 9 C -0.17 -4.76 9.15 71.98 0.66 -4.10 16 10 C 0.00 -0.21 3.72 29.85 0.11 -0.10 16 11 C -0.49 -27.82 9.39 25.60 0.24 -27.58 16 12 H 0.07 4.34 6.72 -2.91 -0.02 4.32 16 13 C 0.00 -0.07 5.47 84.66 0.46 0.39 16 14 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 15 Si 0.93 45.85 27.47 68.60 1.88 47.73 16 16 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 17 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 18 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16 19 C -0.15 -4.98 4.10 24.59 0.10 -4.88 16 20 C -0.16 -4.85 9.21 21.22 0.20 -4.65 16 21 C -0.14 -4.12 10.18 21.21 0.22 -3.90 16 22 C -0.26 -8.71 11.23 66.72 0.75 -7.96 16 23 S 0.11 4.53 21.86 -56.49 -1.23 3.29 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 1.05 6.42 -2.39 -0.02 1.03 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.05 1.09 6.60 -2.39 -0.02 1.08 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.34 10.64 6.14 -89.69 -0.55 10.09 16 32 H 0.06 1.51 7.37 -2.38 -0.02 1.50 16 33 H 0.06 1.60 8.06 -2.38 -0.02 1.58 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 35 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 36 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 37 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 39 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 40 H 0.16 4.97 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -67.33 328.74 2.90 -64.42 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.40 Total: 21.60 kcal Atomic # 6 Polarization: -54.34 SS G_CDS: 4.17 Total: -50.17 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -2.32 Total: -86.87 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.88 Total: 47.73 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.23 Total: 3.29 kcal Total: -67.33 2.90 -64.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.722 kcal (2) G-P(sol) polarization free energy of solvation -67.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds