Wall clock time and date at job start Mon Mar 30 2020 06:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47473 * 2 1 4 4 C 1.53001 * 109.47245 * 240.00125 * 2 1 3 5 5 C 1.50704 * 109.46901 * 175.78630 * 4 2 1 6 6 C 1.33389 * 125.19831 * 101.71067 * 5 4 2 7 7 C 1.38431 * 114.91802 * 180.02562 * 6 5 4 8 8 C 1.33396 * 114.91695 * 359.97438 * 7 6 5 9 9 S 1.75879 * 109.59631 * 359.97438 * 8 7 6 10 10 N 1.46898 * 109.47025 * 119.99649 * 2 1 3 11 11 C 1.46904 * 111.00228 * 201.86334 * 10 2 1 12 12 C 1.46894 * 111.00441 * 325.82431 * 10 2 1 13 13 H 1.08995 * 109.47382 * 37.32601 * 12 10 2 14 14 C 1.53003 * 109.47748 * 157.33030 * 12 10 2 15 15 C 1.53005 * 109.46726 * 277.32847 * 12 10 2 16 16 C 1.50702 * 109.47337 * 61.89071 * 15 12 10 17 17 H 1.08005 * 119.99466 * 5.17045 * 16 15 12 18 18 C 1.37875 * 120.00209 * 185.16337 * 16 15 12 19 19 N 1.31512 * 119.99968 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99912 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47068 * 60.00415 * 20 18 16 22 22 H 1.48502 * 109.46988 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47525 * 300.00376 * 20 18 16 24 24 H 1.08994 * 109.46885 * 66.86500 * 1 2 3 25 25 H 1.08992 * 109.47028 * 186.86470 * 1 2 3 26 26 H 1.08997 * 109.46966 * 306.86681 * 1 2 3 27 27 H 1.08993 * 109.47279 * 55.78724 * 4 2 1 28 28 H 1.08998 * 109.46933 * 295.78409 * 4 2 1 29 29 H 1.07997 * 122.54503 * 0.02562 * 6 5 4 30 30 H 1.07998 * 122.54069 * 180.02562 * 7 6 5 31 31 H 1.08003 * 125.19900 * 180.02562 * 8 7 6 32 32 H 1.08994 * 109.46882 * 65.97383 * 11 10 2 33 33 H 1.08999 * 109.47174 * 185.97320 * 11 10 2 34 34 H 1.09000 * 109.47193 * 305.97613 * 11 10 2 35 35 H 1.08990 * 109.47241 * 185.06281 * 14 12 10 36 36 H 1.09001 * 109.46225 * 305.06794 * 14 12 10 37 37 H 1.08996 * 109.46931 * 65.06045 * 14 12 10 38 38 H 1.09002 * 109.46901 * 181.88769 * 15 12 10 39 39 H 1.08997 * 109.47208 * 301.89018 * 15 12 10 40 40 H 0.97001 * 120.00035 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5435 -0.6314 -1.3025 6 6 4.3846 -1.6096 -0.9636 7 6 5.7266 -1.2961 -1.0942 8 6 5.9751 -0.0635 -1.5395 9 16 4.4572 0.7788 -1.8219 10 7 2.0196 -0.6924 1.1995 11 6 3.3951 -0.2862 1.5173 12 6 1.1255 -0.4625 2.3420 13 1 0.0916 -0.4487 1.9973 14 6 1.3068 -1.5851 3.3657 15 6 1.4642 0.8804 2.9924 16 6 1.2410 1.9906 1.9982 17 1 0.8137 1.7713 1.0308 18 6 1.5820 3.2863 2.3235 19 7 2.1026 3.5533 3.5013 20 14 1.3060 4.6624 1.0907 21 1 -0.1385 4.7449 0.7563 22 1 1.7527 5.9507 1.6788 23 1 2.0847 4.3854 -0.1430 24 1 -0.3633 0.4038 -0.9450 25 1 -0.3633 -1.0202 0.1228 26 1 -0.3633 0.6165 0.8222 27 1 1.6164 -0.2529 -2.1376 28 1 1.7397 -1.7684 -1.2123 29 1 4.0445 -2.5731 -0.6140 30 1 6.5128 -1.9967 -0.8544 31 1 6.9581 0.3531 -1.7026 32 1 3.4068 0.7661 1.8011 33 1 3.7704 -0.8896 2.3438 34 1 4.0288 -0.4336 0.6427 35 1 0.5812 -1.4642 4.1699 36 1 1.1533 -2.5484 2.8793 37 1 2.3153 -1.5424 3.7769 38 1 0.8232 1.0356 3.8603 39 1 2.5077 0.8788 3.3070 40 1 2.3429 4.4648 3.7301 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695844708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:11 Heat of formation + Delta-G solvation = 52.286132 kcal Electronic energy + Delta-G solvation = -19571.719258 eV Core-core repulsion = 16900.035746 eV Total energy + Delta-G solvation = -2671.683512 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.99154 -37.27070 -33.58157 -32.33231 -30.04778 -29.63618 -27.39021 -26.03287 -24.23912 -23.12834 -22.76066 -20.48055 -18.99489 -18.01631 -16.97920 -16.35506 -15.63870 -15.19405 -14.62504 -14.16561 -13.78911 -13.04852 -12.99630 -12.63199 -12.42857 -12.36759 -12.15765 -11.87700 -11.50632 -11.38658 -11.31534 -11.23367 -10.95132 -10.72652 -10.60190 -10.47056 -10.28194 -10.18399 -9.97013 -9.80016 -9.27127 -8.79875 -8.33894 -8.16246 -8.11292 -7.07237 -5.99880 -4.00608 1.31855 1.93892 2.32319 3.05244 3.30357 3.35521 3.37413 4.44404 4.83649 5.10222 5.29583 5.35582 5.60573 5.67856 5.82687 5.87384 5.94276 5.97436 6.12112 6.21783 6.25805 6.32004 6.37838 6.40263 6.49763 6.62113 6.67454 6.77107 6.80433 6.86688 6.89921 6.95175 7.07419 7.23147 7.60872 7.72352 7.96317 8.14792 8.23186 8.41768 9.05283 9.62485 11.11380 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.008586 C = 0.006948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.981832 B = 3260.235064 C = 4029.014163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.081 3.919 3 H 0.075 0.925 4 C -0.045 4.045 5 C -0.140 4.140 6 C -0.143 4.143 7 C -0.131 4.131 8 C -0.229 4.229 9 S 0.088 5.912 10 N -0.515 5.515 11 C -0.002 4.002 12 C 0.062 3.938 13 H 0.077 0.923 14 C -0.134 4.134 15 C -0.004 4.004 16 C -0.530 4.530 17 H 0.076 0.924 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.274 1.274 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.157 0.843 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.010 0.990 39 H 0.027 0.973 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 -9.073 -9.463 13.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.028 4.028 3 H 0.093 0.907 4 C -0.085 4.085 5 C -0.257 4.257 6 C -0.172 4.172 7 C -0.162 4.162 8 C -0.364 4.364 9 S 0.352 5.648 10 N -0.239 5.239 11 C -0.150 4.150 12 C -0.046 4.046 13 H 0.095 0.905 14 C -0.191 4.191 15 C -0.042 4.042 16 C -0.568 4.568 17 H 0.094 0.906 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.200 1.200 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.156 0.844 30 H 0.151 0.849 31 H 0.175 0.825 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.028 0.972 39 H 0.045 0.955 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.981 -7.984 -9.965 13.112 hybrid contribution 0.482 0.453 0.282 0.719 sum 3.463 -7.532 -9.683 12.746 Atomic orbital electron populations 1.22242 0.95355 1.01811 1.02284 1.21742 0.94395 0.97324 0.89315 0.90739 1.20412 0.87186 1.02453 0.98439 1.24501 1.00108 0.95998 1.05109 1.19987 0.92008 1.00832 1.04404 1.20118 0.96905 0.96550 1.02660 1.25488 1.01223 0.98761 1.10928 1.84460 0.97500 1.17452 1.65437 1.62383 1.02402 1.55630 1.03528 1.22912 0.90212 1.01077 1.00789 1.22049 0.96825 0.95331 0.90395 0.90478 1.21753 1.00665 0.98418 0.98311 1.19736 0.97647 0.90804 0.96051 1.21677 1.41302 0.92044 1.01736 0.90643 1.24987 0.95354 0.98704 0.94943 1.69961 1.42893 1.19840 1.20458 0.86883 0.78677 0.81972 0.81984 1.20241 1.21368 1.19988 0.93548 0.92861 0.89358 0.91271 0.89909 0.84405 0.84892 0.82543 0.92369 0.93793 0.91153 0.93547 0.93637 0.93703 0.97211 0.95497 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 7.19 37.16 0.27 -2.44 16 2 C 0.08 1.48 1.60 -67.71 -0.11 1.37 16 3 H 0.07 1.61 5.75 -51.93 -0.30 1.31 16 4 C -0.04 -0.68 5.41 -27.88 -0.15 -0.83 16 5 C -0.14 -2.14 3.80 -36.00 -0.14 -2.28 16 6 C -0.14 -2.04 7.98 -41.21 -0.33 -2.37 16 7 C -0.13 -1.73 10.00 -41.20 -0.41 -2.15 16 8 C -0.23 -3.08 11.23 29.04 0.33 -2.75 16 9 S 0.09 1.35 23.18 -107.50 -2.49 -1.14 16 10 N -0.52 -9.78 4.46 -226.91 -1.01 -10.79 16 11 C 0.00 -0.04 7.96 60.07 0.48 0.44 16 12 C 0.06 1.26 2.34 -67.71 -0.16 1.10 16 13 H 0.08 1.55 4.85 -51.93 -0.25 1.29 16 14 C -0.13 -2.41 9.27 37.16 0.34 -2.06 16 15 C 0.00 -0.11 3.94 -27.88 -0.11 -0.22 16 16 C -0.53 -13.92 6.32 -34.44 -0.22 -14.13 16 17 H 0.08 1.87 3.04 -52.48 -0.16 1.71 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 20 Si 0.88 21.28 29.54 -169.99 -5.02 16.25 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.82 7.92 -51.93 -0.41 0.41 16 26 H 0.09 1.71 4.72 -51.93 -0.24 1.47 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.17 8.12 -51.93 -0.42 0.75 16 29 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.16 1.74 8.06 -52.48 -0.42 1.32 16 32 H 0.06 1.40 5.39 -51.93 -0.28 1.12 16 33 H 0.04 0.87 7.21 -51.93 -0.37 0.49 16 34 H 0.07 1.29 2.92 -51.93 -0.15 1.14 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.82 7.30 -51.93 -0.38 0.44 16 38 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.03 0.73 6.21 -51.93 -0.32 0.41 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 310.87 15.07 4.68 4.68 Total: -1.00 -28.42 310.87 -9.22 -37.64 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.81 Total: 3.71 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -0.30 Total: -24.72 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.27 Total: -36.44 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.49 Total: -1.14 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.42 -9.22 -37.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695844708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.927 kcal (2) G-P(sol) polarization free energy of solvation -28.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds