Wall clock time and date at job start Mon Mar 30 2020 06:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47473 * 2 1 4 4 C 1.53001 * 109.47245 * 240.00125 * 2 1 3 5 5 C 1.50704 * 109.46901 * 175.78630 * 4 2 1 6 6 C 1.33389 * 125.19831 * 101.71067 * 5 4 2 7 7 C 1.38431 * 114.91802 * 180.02562 * 6 5 4 8 8 C 1.33396 * 114.91695 * 359.97438 * 7 6 5 9 9 S 1.75879 * 109.59631 * 359.97438 * 8 7 6 10 10 N 1.46898 * 109.47025 * 119.99649 * 2 1 3 11 11 C 1.46904 * 111.00228 * 201.86334 * 10 2 1 12 12 C 1.46894 * 111.00441 * 325.82431 * 10 2 1 13 13 H 1.08995 * 109.47382 * 37.32601 * 12 10 2 14 14 C 1.53003 * 109.47748 * 157.33030 * 12 10 2 15 15 C 1.53005 * 109.46726 * 277.32847 * 12 10 2 16 16 C 1.50702 * 109.47337 * 61.89071 * 15 12 10 17 17 H 1.08005 * 119.99466 * 5.17045 * 16 15 12 18 18 C 1.37875 * 120.00209 * 185.16337 * 16 15 12 19 19 N 1.31512 * 119.99968 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99912 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47068 * 60.00415 * 20 18 16 22 22 H 1.48502 * 109.46988 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47525 * 300.00376 * 20 18 16 24 24 H 1.08994 * 109.46885 * 66.86500 * 1 2 3 25 25 H 1.08992 * 109.47028 * 186.86470 * 1 2 3 26 26 H 1.08997 * 109.46966 * 306.86681 * 1 2 3 27 27 H 1.08993 * 109.47279 * 55.78724 * 4 2 1 28 28 H 1.08998 * 109.46933 * 295.78409 * 4 2 1 29 29 H 1.07997 * 122.54503 * 0.02562 * 6 5 4 30 30 H 1.07998 * 122.54069 * 180.02562 * 7 6 5 31 31 H 1.08003 * 125.19900 * 180.02562 * 8 7 6 32 32 H 1.08994 * 109.46882 * 65.97383 * 11 10 2 33 33 H 1.08999 * 109.47174 * 185.97320 * 11 10 2 34 34 H 1.09000 * 109.47193 * 305.97613 * 11 10 2 35 35 H 1.08990 * 109.47241 * 185.06281 * 14 12 10 36 36 H 1.09001 * 109.46225 * 305.06794 * 14 12 10 37 37 H 1.08996 * 109.46931 * 65.06045 * 14 12 10 38 38 H 1.09002 * 109.46901 * 181.88769 * 15 12 10 39 39 H 1.08997 * 109.47208 * 301.89018 * 15 12 10 40 40 H 0.97001 * 120.00035 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5435 -0.6314 -1.3025 6 6 4.3846 -1.6096 -0.9636 7 6 5.7266 -1.2961 -1.0942 8 6 5.9751 -0.0635 -1.5395 9 16 4.4572 0.7788 -1.8219 10 7 2.0196 -0.6924 1.1995 11 6 3.3951 -0.2862 1.5173 12 6 1.1255 -0.4625 2.3420 13 1 0.0916 -0.4487 1.9973 14 6 1.3068 -1.5851 3.3657 15 6 1.4642 0.8804 2.9924 16 6 1.2410 1.9906 1.9982 17 1 0.8137 1.7713 1.0308 18 6 1.5820 3.2863 2.3235 19 7 2.1026 3.5533 3.5013 20 14 1.3060 4.6624 1.0907 21 1 -0.1385 4.7449 0.7563 22 1 1.7527 5.9507 1.6788 23 1 2.0847 4.3854 -0.1430 24 1 -0.3633 0.4038 -0.9450 25 1 -0.3633 -1.0202 0.1228 26 1 -0.3633 0.6165 0.8222 27 1 1.6164 -0.2529 -2.1376 28 1 1.7397 -1.7684 -1.2123 29 1 4.0445 -2.5731 -0.6140 30 1 6.5128 -1.9967 -0.8544 31 1 6.9581 0.3531 -1.7026 32 1 3.4068 0.7661 1.8011 33 1 3.7704 -0.8896 2.3438 34 1 4.0288 -0.4336 0.6427 35 1 0.5812 -1.4642 4.1699 36 1 1.1533 -2.5484 2.8793 37 1 2.3153 -1.5424 3.7769 38 1 0.8232 1.0356 3.8603 39 1 2.5077 0.8788 3.3070 40 1 2.3429 4.4648 3.7301 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695844708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:11 Heat of formation + Delta-G solvation = 36.239912 kcal Electronic energy + Delta-G solvation = -19572.415074 eV Core-core repulsion = 16900.035746 eV Total energy + Delta-G solvation = -2672.379328 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.47039 -38.50933 -35.18971 -34.23018 -31.42141 -31.12845 -29.31887 -27.23141 -25.82807 -24.97627 -24.02615 -21.98063 -20.13084 -19.62167 -18.60932 -17.93748 -17.17482 -16.55821 -16.31420 -15.76001 -15.34329 -14.65517 -14.38284 -14.08604 -13.89154 -13.79610 -13.51335 -13.31237 -13.22113 -12.92655 -12.79690 -12.69504 -12.51631 -12.41888 -12.12055 -12.11391 -11.76671 -11.68757 -11.55552 -11.37308 -11.06823 -10.72744 -10.46762 -9.33545 -9.31110 -8.73014 -8.14495 -6.19314 0.21292 0.81774 1.22311 1.35261 1.36922 1.42600 1.97487 2.40134 3.17689 3.34713 3.92396 4.27128 4.30636 4.33820 4.48033 4.56248 4.67616 4.73797 4.78244 4.83838 4.87721 4.88889 4.97453 5.02353 5.07732 5.19376 5.24522 5.33931 5.36685 5.38589 5.43161 5.51530 5.57928 5.64974 5.69471 5.73881 5.89364 6.29850 6.51507 6.56421 6.96074 7.47240 8.97691 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.008586 C = 0.006948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.981832 B = 3260.235064 C = 4029.014163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.079 3.921 3 H 0.036 0.964 4 C -0.037 4.037 5 C -0.157 4.157 6 C -0.139 4.139 7 C -0.135 4.135 8 C -0.223 4.223 9 S 0.039 5.961 10 N -0.499 5.499 11 C 0.011 3.989 12 C 0.066 3.934 13 H 0.086 0.914 14 C -0.127 4.127 15 C 0.003 3.997 16 C -0.524 4.524 17 H 0.093 0.907 18 C 0.003 3.997 19 N -0.936 5.936 20 Si 0.935 3.065 21 H -0.265 1.265 22 H -0.291 1.291 23 H -0.267 1.267 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.152 0.848 30 H 0.162 0.838 31 H 0.179 0.821 32 H 0.011 0.989 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.035 0.965 38 H -0.022 1.022 39 H -0.004 1.004 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.153 -10.937 -11.340 16.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.030 4.030 3 H 0.054 0.946 4 C -0.076 4.076 5 C -0.274 4.274 6 C -0.169 4.169 7 C -0.166 4.166 8 C -0.358 4.358 9 S 0.302 5.698 10 N -0.222 5.222 11 C -0.138 4.138 12 C -0.043 4.043 13 H 0.104 0.896 14 C -0.185 4.185 15 C -0.035 4.035 16 C -0.562 4.562 17 H 0.110 0.890 18 C -0.194 4.194 19 N -0.577 5.577 20 Si 0.761 3.239 21 H -0.190 1.190 22 H -0.217 1.217 23 H -0.192 1.192 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.169 0.831 30 H 0.179 0.821 31 H 0.197 0.803 32 H 0.029 0.971 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.054 0.946 38 H -0.003 1.003 39 H 0.015 0.985 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.849 -9.862 -11.863 15.687 hybrid contribution 0.571 0.977 0.866 1.425 sum 3.420 -8.885 -10.997 14.546 Atomic orbital electron populations 1.22162 0.94231 1.02639 1.02248 1.21755 0.95350 0.95710 0.90211 0.94592 1.20320 0.87190 1.03061 0.97048 1.24568 1.00332 0.95990 1.06538 1.20272 0.92425 1.00988 1.03228 1.20452 0.97261 0.96887 1.01956 1.25793 1.01088 0.98581 1.10298 1.84634 0.99723 1.19032 1.66458 1.62508 1.01536 1.54908 1.03256 1.22797 0.91442 0.97960 1.01574 1.21998 0.97562 0.93487 0.91210 0.89583 1.21682 1.00328 0.98536 0.97911 1.19653 0.95016 0.93737 0.95062 1.22148 1.39450 0.92237 1.02373 0.88973 1.25799 0.95639 1.01418 0.96516 1.70113 1.44997 1.20030 1.22573 0.85935 0.79139 0.78906 0.79901 1.18958 1.21716 1.19248 0.91477 0.90786 0.92216 0.89934 0.88143 0.83084 0.82085 0.80319 0.97070 0.93808 0.89133 0.93003 0.91082 0.94628 1.00349 0.98526 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.92 7.19 71.98 0.52 -4.40 16 2 C 0.08 2.75 1.60 44.92 0.07 2.82 16 3 H 0.04 1.55 5.75 -2.38 -0.01 1.54 16 4 C -0.04 -1.02 5.41 29.85 0.16 -0.85 16 5 C -0.16 -4.51 3.80 24.59 0.09 -4.42 16 6 C -0.14 -3.58 7.98 21.22 0.17 -3.41 16 7 C -0.14 -3.17 10.00 21.22 0.21 -2.96 16 8 C -0.22 -5.52 11.23 66.72 0.75 -4.77 16 9 S 0.04 1.16 23.18 -56.49 -1.31 -0.15 16 10 N -0.50 -18.30 4.46 -871.80 -3.88 -22.19 16 11 C 0.01 0.42 7.96 127.69 1.02 1.44 16 12 C 0.07 2.63 2.34 44.92 0.10 2.74 16 13 H 0.09 3.34 4.85 -2.39 -0.01 3.33 16 14 C -0.13 -4.39 9.27 71.98 0.67 -3.72 16 15 C 0.00 0.18 3.94 29.85 0.12 0.29 16 16 C -0.52 -28.19 6.32 25.60 0.16 -28.03 16 17 H 0.09 4.58 3.04 -2.91 -0.01 4.58 16 18 C 0.00 0.19 5.46 84.65 0.46 0.65 16 19 N -0.94 -57.54 13.29 21.45 0.28 -57.25 16 20 Si 0.94 44.46 29.54 68.60 2.03 46.48 16 21 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.07 2.03 7.92 -2.39 -0.02 2.02 16 26 H 0.06 2.24 4.72 -2.39 -0.01 2.23 16 27 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.10 2.46 8.12 -2.39 -0.02 2.44 16 29 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 30 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.18 3.52 8.06 -2.91 -0.02 3.49 16 32 H 0.01 0.54 5.39 -2.39 -0.01 0.53 16 33 H 0.04 1.72 7.21 -2.39 -0.02 1.70 16 34 H 0.09 3.24 2.92 -2.39 -0.01 3.24 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.03 1.28 7.30 -2.39 -0.02 1.26 16 38 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 39 H 0.00 -0.21 6.21 -2.39 -0.01 -0.22 16 40 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -63.31 310.87 2.65 -60.66 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 1.03 Total: 17.08 kcal Atomic # 6 Polarization: -49.13 SS G_CDS: 4.51 Total: -44.63 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -3.60 Total: -79.44 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -1.31 Total: -0.15 kcal Total: -63.31 2.65 -60.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695844708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.901 kcal (2) G-P(sol) polarization free energy of solvation -63.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds