Wall clock time and date at job start Mon Mar 30 2020 06:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47243 * 2 1 4 4 N 1.46894 * 109.47426 * 120.00213 * 2 1 3 5 5 C 1.46899 * 111.00266 * 272.34752 * 4 2 1 6 6 C 1.50707 * 109.46621 * 76.79670 * 5 4 2 7 7 C 1.33383 * 125.20094 * 82.07210 * 6 5 4 8 8 C 1.38430 * 114.92021 * 179.97438 * 7 6 5 9 9 C 1.33388 * 114.92129 * 359.97438 * 8 7 6 10 10 S 1.75884 * 125.20061 * 262.04242 * 6 5 4 11 11 C 1.46902 * 111.00073 * 148.39390 * 4 2 1 12 12 H 1.09003 * 109.47174 * 172.55992 * 11 4 2 13 13 C 1.53002 * 109.47240 * 52.56131 * 11 4 2 14 14 C 1.53004 * 109.47155 * 292.55748 * 11 4 2 15 15 C 1.50697 * 109.47256 * 293.96438 * 14 11 4 16 16 H 1.08001 * 120.00055 * 0.02562 * 15 14 11 17 17 C 1.37875 * 119.99842 * 179.97438 * 15 14 11 18 18 N 1.31509 * 120.00085 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99646 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47159 * 60.00619 * 19 17 15 21 21 H 1.48506 * 109.46799 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47444 * 299.99941 * 19 17 15 23 23 H 1.09001 * 109.47289 * 304.72092 * 1 2 3 24 24 H 1.09003 * 109.47391 * 64.72344 * 1 2 3 25 25 H 1.09004 * 109.47049 * 184.72270 * 1 2 3 26 26 H 1.09010 * 109.47091 * 240.00756 * 2 1 3 27 27 H 1.08998 * 109.47006 * 171.92754 * 3 2 1 28 28 H 1.09001 * 109.46956 * 291.92771 * 3 2 1 29 29 H 1.09002 * 109.46631 * 51.92466 * 3 2 1 30 30 H 1.09000 * 109.47184 * 316.80282 * 5 4 2 31 31 H 1.08999 * 109.47421 * 196.79817 * 5 4 2 32 32 H 1.07999 * 122.54055 * 0.25082 * 7 6 5 33 33 H 1.07995 * 122.53763 * 180.02562 * 8 7 6 34 34 H 1.07991 * 125.20604 * 180.02562 * 9 8 7 35 35 H 1.08993 * 109.47047 * 59.99313 * 13 11 4 36 36 H 1.09000 * 109.47253 * 180.02562 * 13 11 4 37 37 H 1.09003 * 109.46924 * 300.00014 * 13 11 4 38 38 H 1.08997 * 109.46755 * 53.96455 * 14 11 4 39 39 H 1.09003 * 109.46601 * 173.96694 * 14 11 4 40 40 H 0.96997 * 119.99884 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1993 5 6 2.1422 0.2366 2.3306 6 6 0.7755 0.5174 2.9002 7 6 0.1261 -0.2660 3.7626 8 6 -1.1198 0.1982 4.1482 9 6 -1.4818 1.3588 3.5993 10 16 -0.2068 1.9286 2.5300 11 6 3.2964 -1.3684 0.9326 12 1 3.7018 -1.7604 1.8654 13 6 4.2849 -0.3703 0.3264 14 6 3.0684 -2.5203 -0.0483 15 6 2.2133 -3.5750 0.6054 16 1 1.8666 -3.4374 1.6189 17 6 1.8725 -4.7152 -0.0909 18 7 2.2942 -4.8826 -1.3252 19 14 0.8132 -6.0229 0.7197 20 1 -0.4944 -5.4328 1.1035 21 1 0.5918 -7.1409 -0.2324 22 1 1.5003 -6.5350 1.9325 23 1 -0.3634 0.5853 0.8447 24 1 -0.3634 0.4388 -0.9293 25 1 -0.3633 -1.0242 0.0846 26 1 1.8933 -0.5138 -0.8901 27 1 3.1203 1.4459 0.1443 28 1 1.7992 1.9130 -0.9533 29 1 1.5635 1.9963 0.8090 30 1 2.5916 1.1687 1.9882 31 1 2.7721 -0.2093 3.1004 32 1 0.5427 -1.1900 4.1354 33 1 -1.7504 -0.3383 4.8416 34 1 -2.4150 1.8702 3.7832 35 1 4.4472 0.4502 1.0251 36 1 5.2321 -0.8720 0.1280 37 1 3.8795 0.0217 -0.6064 38 1 2.5646 -2.1447 -0.9390 39 1 4.0284 -2.9536 -0.3292 40 1 2.0542 -5.6846 -1.8152 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695844977.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:48 Heat of formation + Delta-G solvation = 45.958341 kcal Electronic energy + Delta-G solvation = -19315.097909 eV Core-core repulsion = 16643.140003 eV Total energy + Delta-G solvation = -2671.957905 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.16812 -37.23597 -33.49940 -31.88593 -31.28470 -28.35985 -27.87480 -26.42370 -25.16663 -23.03372 -22.42406 -20.75916 -19.00316 -18.39052 -16.76319 -16.12078 -15.83581 -15.41286 -14.78558 -14.40370 -13.65059 -13.27438 -13.00774 -12.84768 -12.57596 -12.37771 -12.25332 -11.96187 -11.74470 -11.71079 -11.62468 -11.15810 -11.10881 -10.77906 -10.73910 -10.54625 -10.42802 -10.37168 -10.02893 -9.77632 -9.18137 -8.96179 -8.37284 -8.22192 -7.96938 -7.47701 -5.85896 -3.83113 1.23614 1.83852 2.19698 3.02879 3.42574 3.46256 3.50114 4.57805 4.62478 5.08237 5.23082 5.41081 5.45568 5.51197 5.58010 5.72055 5.74731 5.75102 5.84698 5.90319 5.99343 6.01712 6.15920 6.23151 6.34025 6.35609 6.42125 6.44966 6.59652 6.67548 6.76837 6.80708 6.97800 7.02542 7.57944 7.70053 7.93246 8.06231 8.15130 8.61062 9.21942 9.78182 11.26165 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.007026 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.448433 B = 3984.038279 C = 4833.218748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.079 3.921 3 C -0.191 4.191 4 N -0.498 5.498 5 C 0.109 3.891 6 C -0.141 4.141 7 C -0.129 4.129 8 C -0.127 4.127 9 C -0.232 4.232 10 S 0.083 5.917 11 C 0.086 3.914 12 H 0.070 0.930 13 C -0.187 4.187 14 C 0.032 3.968 15 C -0.488 4.488 16 H 0.059 0.941 17 C 0.051 3.949 18 N -0.904 5.904 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.280 1.280 23 H 0.063 0.937 24 H 0.042 0.958 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.157 0.843 35 H 0.040 0.960 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.018 0.982 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.931 14.316 7.383 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.029 4.029 3 C -0.250 4.250 4 N -0.220 5.220 5 C -0.021 4.021 6 C -0.258 4.258 7 C -0.159 4.159 8 C -0.159 4.159 9 C -0.367 4.367 10 S 0.346 5.654 11 C -0.022 4.022 12 H 0.088 0.912 13 C -0.245 4.245 14 C -0.005 4.005 15 C -0.526 4.526 16 H 0.077 0.923 17 C -0.148 4.148 18 N -0.545 5.545 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.206 1.206 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.174 0.826 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.111 15.089 6.470 16.710 hybrid contribution -0.394 -1.461 0.987 1.806 sum -3.504 13.628 7.457 15.925 Atomic orbital electron populations 1.22212 0.95079 1.03044 1.00925 1.21645 0.95754 0.91120 0.94414 1.22868 1.01848 0.98982 1.01278 1.62248 1.28992 1.27188 1.03586 1.20764 0.89986 0.96567 0.94803 1.24470 1.01310 0.97657 1.02392 1.20111 0.94841 1.00986 0.99946 1.20169 0.97150 0.96293 1.02241 1.25553 1.03868 1.02172 1.05104 1.84090 1.11345 1.24864 1.45057 1.22015 0.85604 0.94359 1.00194 0.91206 1.22779 1.01050 0.99803 1.00912 1.19198 0.96836 0.91045 0.93459 1.21106 1.29957 1.01728 0.99819 0.92277 1.24978 0.96547 0.98344 0.94920 1.69946 1.46631 1.27765 1.10188 0.86727 0.81258 0.81380 0.78992 1.20376 1.21708 1.20560 0.91826 0.93884 0.91615 0.89449 0.91471 0.92688 0.93073 0.93051 0.89853 0.84182 0.84807 0.82577 0.94117 0.92684 0.92279 0.96185 0.96351 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.08 37.15 0.34 -2.36 16 2 C 0.08 1.39 2.18 -67.72 -0.15 1.24 16 3 C -0.19 -2.75 7.19 37.16 0.27 -2.48 16 4 N -0.50 -9.17 4.03 -220.14 -0.89 -10.06 16 5 C 0.11 1.68 4.40 -4.97 -0.02 1.66 16 6 C -0.14 -2.11 4.59 -36.00 -0.17 -2.28 16 7 C -0.13 -1.93 10.05 -41.21 -0.41 -2.34 16 8 C -0.13 -1.68 10.18 -41.21 -0.42 -2.10 16 9 C -0.23 -2.86 11.23 29.04 0.33 -2.54 16 10 S 0.08 1.09 18.48 -107.50 -1.99 -0.90 16 11 C 0.09 1.69 2.20 -67.71 -0.15 1.55 16 12 H 0.07 1.39 7.78 -51.93 -0.40 0.99 16 13 C -0.19 -3.07 7.42 37.16 0.28 -2.80 16 14 C 0.03 0.79 4.40 -27.88 -0.12 0.67 16 15 C -0.49 -13.55 8.86 -34.44 -0.31 -13.85 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 17 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 18 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 19 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H 0.06 1.03 3.52 -33.48 -0.12 0.91 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.09 1.75 5.31 -51.92 -0.28 1.47 16 27 H 0.07 0.93 4.28 -51.93 -0.22 0.71 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.70 4.49 -51.93 -0.23 0.46 16 30 H 0.05 0.74 4.70 -51.93 -0.24 0.49 16 31 H 0.08 1.25 7.69 -51.93 -0.40 0.85 16 32 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 33 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.04 0.58 6.51 -51.93 -0.34 0.24 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.97 5.59 -51.93 -0.29 0.68 16 38 H 0.02 0.54 6.21 -51.93 -0.32 0.21 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 310.90 15.07 4.69 4.69 Total: -1.00 -29.63 310.90 -8.88 -38.51 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.77 Total: 1.36 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -0.64 Total: -24.24 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: -0.15 Total: -36.59 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -1.99 Total: -0.90 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.63 -8.88 -38.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695844977.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.464 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds