Wall clock time and date at job start Mon Mar 30 2020 06:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47243 * 2 1 4 4 N 1.46894 * 109.47426 * 120.00213 * 2 1 3 5 5 C 1.46899 * 111.00266 * 272.34752 * 4 2 1 6 6 C 1.50707 * 109.46621 * 76.79670 * 5 4 2 7 7 C 1.33383 * 125.20094 * 82.07210 * 6 5 4 8 8 C 1.38430 * 114.92021 * 179.97438 * 7 6 5 9 9 C 1.33388 * 114.92129 * 359.97438 * 8 7 6 10 10 S 1.75884 * 125.20061 * 262.04242 * 6 5 4 11 11 C 1.46902 * 111.00073 * 148.39390 * 4 2 1 12 12 H 1.09003 * 109.47174 * 172.55992 * 11 4 2 13 13 C 1.53002 * 109.47240 * 52.56131 * 11 4 2 14 14 C 1.53004 * 109.47155 * 292.55748 * 11 4 2 15 15 C 1.50697 * 109.47256 * 293.96438 * 14 11 4 16 16 H 1.08001 * 120.00055 * 0.02562 * 15 14 11 17 17 C 1.37875 * 119.99842 * 179.97438 * 15 14 11 18 18 N 1.31509 * 120.00085 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99646 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47159 * 60.00619 * 19 17 15 21 21 H 1.48506 * 109.46799 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47444 * 299.99941 * 19 17 15 23 23 H 1.09001 * 109.47289 * 304.72092 * 1 2 3 24 24 H 1.09003 * 109.47391 * 64.72344 * 1 2 3 25 25 H 1.09004 * 109.47049 * 184.72270 * 1 2 3 26 26 H 1.09010 * 109.47091 * 240.00756 * 2 1 3 27 27 H 1.08998 * 109.47006 * 171.92754 * 3 2 1 28 28 H 1.09001 * 109.46956 * 291.92771 * 3 2 1 29 29 H 1.09002 * 109.46631 * 51.92466 * 3 2 1 30 30 H 1.09000 * 109.47184 * 316.80282 * 5 4 2 31 31 H 1.08999 * 109.47421 * 196.79817 * 5 4 2 32 32 H 1.07999 * 122.54055 * 0.25082 * 7 6 5 33 33 H 1.07995 * 122.53763 * 180.02562 * 8 7 6 34 34 H 1.07991 * 125.20604 * 180.02562 * 9 8 7 35 35 H 1.08993 * 109.47047 * 59.99313 * 13 11 4 36 36 H 1.09000 * 109.47253 * 180.02562 * 13 11 4 37 37 H 1.09003 * 109.46924 * 300.00014 * 13 11 4 38 38 H 1.08997 * 109.46755 * 53.96455 * 14 11 4 39 39 H 1.09003 * 109.46601 * 173.96694 * 14 11 4 40 40 H 0.96997 * 119.99884 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1993 5 6 2.1422 0.2366 2.3306 6 6 0.7755 0.5174 2.9002 7 6 0.1261 -0.2660 3.7626 8 6 -1.1198 0.1982 4.1482 9 6 -1.4818 1.3588 3.5993 10 16 -0.2068 1.9286 2.5300 11 6 3.2964 -1.3684 0.9326 12 1 3.7018 -1.7604 1.8654 13 6 4.2849 -0.3703 0.3264 14 6 3.0684 -2.5203 -0.0483 15 6 2.2133 -3.5750 0.6054 16 1 1.8666 -3.4374 1.6189 17 6 1.8725 -4.7152 -0.0909 18 7 2.2942 -4.8826 -1.3252 19 14 0.8132 -6.0229 0.7197 20 1 -0.4944 -5.4328 1.1035 21 1 0.5918 -7.1409 -0.2324 22 1 1.5003 -6.5350 1.9325 23 1 -0.3634 0.5853 0.8447 24 1 -0.3634 0.4388 -0.9293 25 1 -0.3633 -1.0242 0.0846 26 1 1.8933 -0.5138 -0.8901 27 1 3.1203 1.4459 0.1443 28 1 1.7992 1.9130 -0.9533 29 1 1.5635 1.9963 0.8090 30 1 2.5916 1.1687 1.9882 31 1 2.7721 -0.2093 3.1004 32 1 0.5427 -1.1900 4.1354 33 1 -1.7504 -0.3383 4.8416 34 1 -2.4150 1.8702 3.7832 35 1 4.4472 0.4502 1.0251 36 1 5.2321 -0.8720 0.1280 37 1 3.8795 0.0217 -0.6064 38 1 2.5646 -2.1447 -0.9390 39 1 4.0284 -2.9536 -0.3292 40 1 2.0542 -5.6846 -1.8152 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695844977.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:47 Heat of formation + Delta-G solvation = 29.135427 kcal Electronic energy + Delta-G solvation = -19315.827405 eV Core-core repulsion = 16643.140003 eV Total energy + Delta-G solvation = -2672.687402 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.54330 -38.34602 -35.38434 -33.68505 -32.54499 -29.82378 -29.39523 -27.93234 -26.39119 -24.90031 -23.64995 -22.25841 -20.08469 -19.88666 -18.29208 -17.84295 -17.27192 -16.70169 -16.38992 -15.93727 -15.00588 -14.77244 -14.35449 -14.26197 -13.83233 -13.73920 -13.70183 -13.46923 -13.13318 -13.10348 -12.93488 -12.84236 -12.64993 -12.48477 -12.36490 -12.04237 -12.03121 -11.66154 -11.51975 -11.29892 -11.02466 -10.93879 -10.44401 -9.47219 -9.03137 -8.86381 -8.08220 -6.11741 0.17618 0.80019 1.15055 1.40358 1.43040 1.50105 1.95183 2.47688 3.19198 3.31120 3.93278 4.08942 4.18835 4.28492 4.31743 4.36973 4.50353 4.55080 4.60667 4.67733 4.79363 4.82213 4.83786 4.91155 4.98663 5.01358 5.11338 5.25294 5.26769 5.34905 5.39663 5.50922 5.54747 5.58338 5.70459 5.73316 5.93239 6.36790 6.50548 6.58611 7.01691 7.53347 9.03658 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.007026 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.448433 B = 3984.038279 C = 4833.218748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.182 4.182 4 N -0.518 5.518 5 C 0.112 3.888 6 C -0.165 4.165 7 C -0.141 4.141 8 C -0.142 4.142 9 C -0.223 4.223 10 S 0.102 5.898 11 C 0.095 3.905 12 H 0.066 0.934 13 C -0.176 4.176 14 C 0.038 3.962 15 C -0.494 4.494 16 H 0.056 0.944 17 C -0.004 4.004 18 N -0.940 5.940 19 Si 0.951 3.049 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.269 1.269 23 H 0.079 0.921 24 H 0.057 0.943 25 H 0.027 0.973 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.130 0.870 33 H 0.153 0.847 34 H 0.186 0.814 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.058 0.942 38 H -0.004 1.004 39 H -0.008 1.008 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.852 16.113 8.732 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 C -0.240 4.240 4 N -0.242 5.242 5 C -0.017 4.017 6 C -0.283 4.283 7 C -0.172 4.172 8 C -0.173 4.173 9 C -0.358 4.358 10 S 0.365 5.635 11 C -0.013 4.013 12 H 0.084 0.916 13 C -0.235 4.235 14 C 0.001 3.999 15 C -0.533 4.533 16 H 0.074 0.926 17 C -0.200 4.200 18 N -0.582 5.582 19 Si 0.777 3.223 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.194 1.194 23 H 0.098 0.902 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.148 0.852 33 H 0.170 0.830 34 H 0.203 0.797 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.014 0.986 39 H 0.010 0.990 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.028 16.899 7.835 19.057 hybrid contribution -0.155 -1.996 0.582 2.085 sum -4.184 14.903 8.417 17.619 Atomic orbital electron populations 1.22203 0.95211 1.01010 1.02450 1.21566 0.95647 0.92836 0.92848 1.22746 1.02245 0.96519 1.02530 1.62096 1.28333 1.28906 1.04829 1.20759 0.90856 0.96513 0.93604 1.24483 1.01597 0.99076 1.03113 1.20281 0.95836 1.00833 1.00202 1.20351 0.96808 0.96988 1.03115 1.25954 1.04436 1.01663 1.03725 1.83941 1.11009 1.23449 1.45064 1.21680 0.87311 0.93764 0.98533 0.91596 1.22647 0.99845 0.99700 1.01309 1.19047 0.94550 0.92475 0.93818 1.21440 1.29738 1.02425 0.99661 0.92603 1.25789 0.97979 1.00704 0.95485 1.70077 1.48128 1.28444 1.11587 0.85716 0.79536 0.78720 0.78314 1.20077 1.21375 1.19422 0.90225 0.92415 0.95396 0.92664 0.90723 0.91326 0.91969 0.91354 0.89724 0.85198 0.82958 0.79685 0.91181 0.92722 0.92352 0.98602 0.98985 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 9.08 71.98 0.65 -4.55 16 2 C 0.08 2.77 2.18 44.92 0.10 2.86 16 3 C -0.18 -4.82 7.19 71.98 0.52 -4.30 16 4 N -0.52 -19.04 4.03 -850.38 -3.43 -22.47 16 5 C 0.11 3.30 4.40 85.56 0.38 3.68 16 6 C -0.17 -4.71 4.59 24.59 0.11 -4.60 16 7 C -0.14 -4.06 10.05 21.22 0.21 -3.85 16 8 C -0.14 -3.44 10.18 21.22 0.22 -3.22 16 9 C -0.22 -4.81 11.23 66.72 0.75 -4.06 16 10 S 0.10 2.39 18.48 -56.49 -1.04 1.35 16 11 C 0.10 3.78 2.20 44.92 0.10 3.88 16 12 H 0.07 2.64 7.78 -2.39 -0.02 2.63 16 13 C -0.18 -5.63 7.42 71.98 0.53 -5.10 16 14 C 0.04 1.99 4.40 29.85 0.13 2.12 16 15 C -0.49 -28.22 8.86 25.60 0.23 -28.00 16 16 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 17 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 18 N -0.94 -58.31 13.29 21.45 0.28 -58.02 16 19 Si 0.95 46.25 29.54 68.60 2.03 48.27 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 23 H 0.08 2.46 3.52 -14.12 -0.05 2.41 16 24 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.06 2.28 5.31 -2.38 -0.01 2.26 16 27 H 0.07 1.87 4.28 -2.39 -0.01 1.86 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 1.51 4.49 -2.39 -0.01 1.50 16 30 H 0.07 1.77 4.70 -2.39 -0.01 1.76 16 31 H 0.08 2.44 7.69 -2.39 -0.02 2.42 16 32 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 33 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.19 2.86 8.06 -2.92 -0.02 2.83 16 35 H 0.07 1.83 6.51 -2.39 -0.02 1.81 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.87 5.59 -2.39 -0.01 1.86 16 38 H 0.00 -0.24 6.21 -2.39 -0.01 -0.25 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.47 16 40 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -65.05 310.90 3.21 -61.83 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.99 Total: 13.93 kcal Atomic # 6 Polarization: -49.28 SS G_CDS: 4.39 Total: -44.89 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -3.14 Total: -80.49 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.04 Total: 1.35 kcal Total: -65.05 3.21 -61.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695844977.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.968 kcal (2) G-P(sol) polarization free energy of solvation -65.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds