Wall clock time and date at job start Mon Mar 30 2020 07:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99676 * 2 1 4 4 H 1.48497 * 109.47286 * 239.99901 * 3 2 1 5 5 H 1.48501 * 109.47187 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46795 * 120.00229 * 3 2 1 7 7 C 1.37877 * 120.00401 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00212 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99709 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.87854 * 62.38953 * 9 7 2 11 11 C 1.55140 * 110.98761 * 298.54312 * 9 7 2 12 12 C 1.54324 * 103.01888 * 206.22112 * 11 9 7 13 13 N 1.47436 * 107.23089 * 22.28261 * 12 11 9 14 14 C 1.46906 * 110.99898 * 123.25894 * 13 12 11 15 15 C 1.52995 * 109.46837 * 69.87309 * 14 13 12 16 16 C 1.53006 * 109.46930 * 179.97438 * 15 14 13 17 17 O 1.42907 * 109.46739 * 179.97438 * 16 15 14 18 18 C 1.42907 * 113.99407 * 180.02562 * 17 16 15 19 19 C 1.54264 * 110.03410 * 267.16784 * 18 17 16 20 20 C 1.54886 * 104.19608 * 217.11085 * 19 18 17 21 21 C 1.54892 * 102.75041 * 37.93973 * 20 19 18 22 22 C 1.53877 * 110.02791 * 150.00122 * 18 17 16 23 23 C 1.47851 * 108.57089 * 0.99176 * 13 12 11 24 24 H 0.96998 * 120.00151 * 0.02562 * 1 2 3 25 25 H 1.08995 * 110.70515 * 87.83625 * 11 9 7 26 26 H 1.09006 * 110.70763 * 324.60350 * 11 9 7 27 27 H 1.08998 * 109.88582 * 262.87896 * 12 11 9 28 28 H 1.09003 * 109.88574 * 141.68917 * 12 11 9 29 29 H 1.09003 * 109.46997 * 189.87106 * 14 13 12 30 30 H 1.08999 * 109.47193 * 309.87069 * 14 13 12 31 31 H 1.09004 * 109.47623 * 299.99948 * 15 14 13 32 32 H 1.08999 * 109.47425 * 59.99902 * 15 14 13 33 33 H 1.08994 * 109.47252 * 299.99990 * 16 15 14 34 34 H 1.08998 * 109.47053 * 60.00591 * 16 15 14 35 35 H 1.09003 * 110.01746 * 28.61185 * 18 17 16 36 36 H 1.09007 * 110.48458 * 335.78688 * 19 18 17 37 37 H 1.08994 * 110.48587 * 98.43049 * 19 18 17 38 38 H 1.09000 * 110.75151 * 279.62577 * 20 19 18 39 39 H 1.08994 * 110.75689 * 156.25776 * 20 19 18 40 40 H 1.09001 * 110.48660 * 203.38356 * 21 20 19 41 41 H 1.08991 * 110.48523 * 80.73838 * 21 20 19 42 42 H 1.09004 * 110.03265 * 238.57072 * 22 18 17 43 43 H 1.08999 * 110.03462 * 0.02562 * 22 18 17 44 44 H 1.08997 * 110.37354 * 94.73217 * 23 13 12 45 45 H 1.08994 * 110.37029 * 217.07440 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6485 -2.5990 -0.9044 11 6 0.3734 -2.6352 1.2703 12 6 0.2524 -4.1635 1.4474 13 7 1.3907 -4.7767 0.7388 14 6 2.1841 -5.6174 1.6455 15 6 1.3805 -6.8648 2.0182 16 6 2.2071 -7.7407 2.9620 17 8 1.4562 -8.9055 3.3106 18 6 2.1412 -9.7955 4.1944 19 6 2.8961 -10.8687 3.3832 20 6 2.7485 -12.1578 4.2290 21 6 1.3025 -12.0462 4.7728 22 6 1.1280 -10.5441 5.0780 23 6 2.2180 -3.6991 0.1555 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6073 -2.1868 1.1116 26 1 0.8693 -2.1856 2.1306 27 1 -0.6852 -4.5136 1.0158 28 1 0.2939 -4.4184 2.5064 29 1 3.1080 -5.9151 1.1496 30 1 2.4213 -5.0547 2.5483 31 1 0.4565 -6.5672 2.5140 32 1 1.1433 -7.4275 1.1153 33 1 3.1307 -8.0383 2.4658 34 1 2.4445 -7.1783 3.8650 35 1 2.8399 -9.2376 4.8180 36 1 2.4360 -11.0003 2.4038 37 1 3.9469 -10.5991 3.2789 38 1 3.4691 -12.1678 5.0468 39 1 2.8590 -13.0443 3.6046 40 1 1.1905 -12.6358 5.6828 41 1 0.5852 -12.3680 4.0180 42 1 1.3354 -10.3503 6.1304 43 1 0.1138 -10.2290 4.8324 44 1 3.0358 -3.4419 0.8287 45 1 2.6068 -4.0031 -0.8163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699951413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:12 Heat of formation + Delta-G solvation = -70.358775 kcal Electronic energy + Delta-G solvation = -20206.055512 eV Core-core repulsion = 17222.133941 eV Total energy + Delta-G solvation = -2983.921571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.20380 -38.15888 -36.29060 -33.76563 -32.11067 -29.44752 -28.98379 -28.20003 -27.67958 -25.04895 -23.59887 -21.59581 -21.02494 -20.48116 -19.69216 -19.32358 -17.17378 -16.35385 -16.02097 -15.86574 -15.16854 -14.73084 -14.62611 -14.32690 -13.62914 -13.44521 -13.31763 -12.92301 -12.47163 -12.21582 -12.15137 -11.82669 -11.43077 -11.39454 -11.26247 -11.21839 -11.01087 -11.00100 -10.90679 -10.79025 -10.71855 -10.55532 -10.37482 -10.11104 -9.60099 -9.55253 -9.21842 -8.83524 -8.38669 -7.59061 -6.01741 -4.05438 3.31300 3.36138 3.38348 3.52397 4.29544 4.31969 4.41896 4.61392 4.77077 4.96913 5.05583 5.16548 5.22354 5.25672 5.31810 5.34758 5.40529 5.43820 5.52387 5.58557 5.61438 5.70623 5.74854 5.82239 5.90049 5.91309 5.95139 6.02861 6.13035 6.25289 6.35463 6.43434 6.53402 6.57622 6.85970 7.16644 7.20855 7.21524 7.66215 7.72232 7.79337 7.90491 8.03084 8.42843 8.96342 9.58707 11.07797 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.056057 B = 0.002650 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.371748 B =10561.838666 C =10712.980364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.049 3.951 10 H 0.036 0.964 11 C -0.117 4.117 12 C 0.038 3.962 13 N -0.534 5.534 14 C 0.057 3.943 15 C -0.112 4.112 16 C 0.064 3.936 17 O -0.380 6.380 18 C 0.083 3.917 19 C -0.148 4.148 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.125 4.125 23 C 0.046 3.954 24 H 0.261 0.739 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.066 0.934 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.035 0.965 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.096 -20.779 9.519 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.030 3.970 10 H 0.055 0.945 11 C -0.156 4.156 12 C -0.090 4.090 13 N -0.259 5.259 14 C -0.072 4.072 15 C -0.150 4.150 16 C -0.013 4.013 17 O -0.299 6.299 18 C 0.025 3.975 19 C -0.186 4.186 20 C -0.162 4.162 21 C -0.161 4.161 22 C -0.163 4.163 23 C -0.081 4.081 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.053 0.947 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.565 -21.008 9.057 23.153 hybrid contribution 1.077 1.537 0.830 2.052 sum 4.642 -19.471 9.887 22.325 Atomic orbital electron populations 1.69955 1.05885 1.26607 1.50169 1.24971 0.94856 0.99027 0.94990 0.86671 0.79601 0.83196 0.78586 1.20222 1.21299 1.20372 1.21007 0.92734 0.90370 1.51337 0.92678 1.19725 0.92169 0.91051 0.94101 0.94540 1.22689 1.02187 0.90886 0.99852 1.22937 0.94027 0.96747 0.95274 1.63558 1.09298 1.21597 1.31408 1.22058 0.96249 0.93728 0.95189 1.21490 0.99062 0.95254 0.99178 1.22531 0.94707 0.86147 0.97899 1.87958 1.42821 1.33086 1.66042 1.22773 0.93619 0.90440 0.90632 1.22910 1.00298 0.95279 1.00092 1.22437 0.96913 0.97561 0.99245 1.22336 0.96995 0.95805 1.00936 1.22241 1.00497 0.94827 0.98695 1.23172 0.96066 0.91287 0.97548 0.92967 0.90826 0.93491 0.91923 0.94527 0.91528 0.95181 0.91250 0.90562 0.93500 0.93647 0.92096 0.90329 0.91627 0.91504 0.91378 0.91577 0.91328 0.91176 0.90265 0.94657 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 12.12 55.43 0.67 -24.92 16 2 C 0.06 1.77 5.34 -17.82 -0.10 1.67 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.24 8.55 -34.44 -0.29 -14.54 16 8 H 0.05 1.49 7.79 -52.49 -0.41 1.08 16 9 C 0.05 1.23 2.96 -89.63 -0.27 0.97 16 10 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 11 C -0.12 -2.79 5.64 -24.91 -0.14 -2.93 16 12 C 0.04 0.75 6.21 -2.84 -0.02 0.74 16 13 N -0.53 -10.40 5.16 -231.25 -1.19 -11.59 16 14 C 0.06 0.90 4.54 -3.82 -0.02 0.89 16 15 C -0.11 -1.58 5.61 -26.73 -0.15 -1.73 16 16 C 0.06 0.78 5.78 37.16 0.21 0.99 16 17 O -0.38 -4.80 9.90 -35.23 -0.35 -5.15 16 18 C 0.08 0.82 3.39 -25.61 -0.09 0.74 16 19 C -0.15 -1.29 6.56 -25.07 -0.16 -1.45 16 20 C -0.12 -0.88 6.91 -24.74 -0.17 -1.05 16 21 C -0.12 -0.90 6.83 -25.07 -0.17 -1.07 16 22 C -0.13 -1.08 6.61 -25.61 -0.17 -1.25 16 23 C 0.05 1.00 6.13 -2.30 -0.01 0.98 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.07 1.88 7.53 -51.93 -0.39 1.49 16 26 H 0.05 1.16 8.03 -51.93 -0.42 0.74 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.04 0.67 6.91 -51.93 -0.36 0.31 16 29 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 30 H 0.03 0.49 7.96 -51.93 -0.41 0.07 16 31 H 0.07 1.03 7.14 -51.93 -0.37 0.66 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.06 0.56 7.80 -51.93 -0.41 0.15 16 36 H 0.08 0.76 8.08 -51.92 -0.42 0.34 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.76 7.95 -51.93 -0.41 0.35 16 44 H 0.04 0.76 7.70 -51.93 -0.40 0.36 16 45 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 350.02 15.07 5.27 5.27 Total: -1.00 -28.68 350.02 -10.78 -39.46 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -8.62 Total: -2.32 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -1.54 Total: -17.04 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.52 Total: -36.52 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.35 Total: -5.15 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.68 -10.78 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699951413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.901 kcal (2) G-P(sol) polarization free energy of solvation -28.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds