Wall clock time and date at job start Mon Mar 30 2020 07:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99676 * 2 1 4 4 H 1.48497 * 109.47286 * 239.99901 * 3 2 1 5 5 H 1.48501 * 109.47187 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46795 * 120.00229 * 3 2 1 7 7 C 1.37877 * 120.00401 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00212 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99709 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.87854 * 62.38953 * 9 7 2 11 11 C 1.55140 * 110.98761 * 298.54312 * 9 7 2 12 12 C 1.54324 * 103.01888 * 206.22112 * 11 9 7 13 13 N 1.47436 * 107.23089 * 22.28261 * 12 11 9 14 14 C 1.46906 * 110.99898 * 123.25894 * 13 12 11 15 15 C 1.52995 * 109.46837 * 69.87309 * 14 13 12 16 16 C 1.53006 * 109.46930 * 179.97438 * 15 14 13 17 17 O 1.42907 * 109.46739 * 179.97438 * 16 15 14 18 18 C 1.42907 * 113.99407 * 180.02562 * 17 16 15 19 19 C 1.54264 * 110.03410 * 267.16784 * 18 17 16 20 20 C 1.54886 * 104.19608 * 217.11085 * 19 18 17 21 21 C 1.54892 * 102.75041 * 37.93973 * 20 19 18 22 22 C 1.53877 * 110.02791 * 150.00122 * 18 17 16 23 23 C 1.47851 * 108.57089 * 0.99176 * 13 12 11 24 24 H 0.96998 * 120.00151 * 0.02562 * 1 2 3 25 25 H 1.08995 * 110.70515 * 87.83625 * 11 9 7 26 26 H 1.09006 * 110.70763 * 324.60350 * 11 9 7 27 27 H 1.08998 * 109.88582 * 262.87896 * 12 11 9 28 28 H 1.09003 * 109.88574 * 141.68917 * 12 11 9 29 29 H 1.09003 * 109.46997 * 189.87106 * 14 13 12 30 30 H 1.08999 * 109.47193 * 309.87069 * 14 13 12 31 31 H 1.09004 * 109.47623 * 299.99948 * 15 14 13 32 32 H 1.08999 * 109.47425 * 59.99902 * 15 14 13 33 33 H 1.08994 * 109.47252 * 299.99990 * 16 15 14 34 34 H 1.08998 * 109.47053 * 60.00591 * 16 15 14 35 35 H 1.09003 * 110.01746 * 28.61185 * 18 17 16 36 36 H 1.09007 * 110.48458 * 335.78688 * 19 18 17 37 37 H 1.08994 * 110.48587 * 98.43049 * 19 18 17 38 38 H 1.09000 * 110.75151 * 279.62577 * 20 19 18 39 39 H 1.08994 * 110.75689 * 156.25776 * 20 19 18 40 40 H 1.09001 * 110.48660 * 203.38356 * 21 20 19 41 41 H 1.08991 * 110.48523 * 80.73838 * 21 20 19 42 42 H 1.09004 * 110.03265 * 238.57072 * 22 18 17 43 43 H 1.08999 * 110.03462 * 0.02562 * 22 18 17 44 44 H 1.08997 * 110.37354 * 94.73217 * 23 13 12 45 45 H 1.08994 * 110.37029 * 217.07440 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6485 -2.5990 -0.9044 11 6 0.3734 -2.6352 1.2703 12 6 0.2524 -4.1635 1.4474 13 7 1.3907 -4.7767 0.7388 14 6 2.1841 -5.6174 1.6455 15 6 1.3805 -6.8648 2.0182 16 6 2.2071 -7.7407 2.9620 17 8 1.4562 -8.9055 3.3106 18 6 2.1412 -9.7955 4.1944 19 6 2.8961 -10.8687 3.3832 20 6 2.7485 -12.1578 4.2290 21 6 1.3025 -12.0462 4.7728 22 6 1.1280 -10.5441 5.0780 23 6 2.2180 -3.6991 0.1555 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6073 -2.1868 1.1116 26 1 0.8693 -2.1856 2.1306 27 1 -0.6852 -4.5136 1.0158 28 1 0.2939 -4.4184 2.5064 29 1 3.1080 -5.9151 1.1496 30 1 2.4213 -5.0547 2.5483 31 1 0.4565 -6.5672 2.5140 32 1 1.1433 -7.4275 1.1153 33 1 3.1307 -8.0383 2.4658 34 1 2.4445 -7.1783 3.8650 35 1 2.8399 -9.2376 4.8180 36 1 2.4360 -11.0003 2.4038 37 1 3.9469 -10.5991 3.2789 38 1 3.4691 -12.1678 5.0468 39 1 2.8590 -13.0443 3.6046 40 1 1.1905 -12.6358 5.6828 41 1 0.5852 -12.3680 4.0180 42 1 1.3354 -10.3503 6.1304 43 1 0.1138 -10.2290 4.8324 44 1 3.0358 -3.4419 0.8287 45 1 2.6068 -4.0031 -0.8163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699951413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:12 Heat of formation + Delta-G solvation = -86.320344 kcal Electronic energy + Delta-G solvation = -20206.747657 eV Core-core repulsion = 17222.133941 eV Total energy + Delta-G solvation = -2984.613716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.09797 -39.68076 -37.14049 -35.45106 -33.78549 -30.98196 -30.00888 -29.62994 -28.48789 -26.72965 -25.16423 -22.86546 -21.62943 -21.49106 -21.35925 -20.86055 -18.50464 -17.90276 -17.12776 -16.77427 -16.60453 -16.26663 -16.08279 -15.44243 -14.71130 -14.60757 -14.28140 -14.23382 -14.15929 -13.90106 -13.33181 -13.02275 -12.91185 -12.79169 -12.70236 -12.38915 -12.27464 -12.10841 -12.01303 -11.94131 -11.84418 -11.67277 -11.50536 -11.48686 -11.43439 -11.13197 -10.90150 -10.50431 -10.41453 -9.17769 -8.14373 -6.25659 1.41265 1.42756 1.50498 2.41286 2.61392 3.15946 3.29483 3.66886 3.69139 3.96633 4.03115 4.07647 4.20117 4.25333 4.35397 4.40068 4.47924 4.52913 4.54000 4.57569 4.59483 4.67878 4.71433 4.78827 4.82143 4.84730 4.96954 5.02152 5.04046 5.13455 5.16539 5.21147 5.23559 5.28663 5.31287 5.35737 5.45574 5.58357 5.80214 5.90483 6.04475 6.29715 6.35409 6.40371 6.83587 7.42316 8.94548 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.056057 B = 0.002650 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.371748 B =10561.838666 C =10712.980364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.535 4.535 8 H 0.056 0.944 9 C 0.037 3.963 10 H 0.003 0.997 11 C -0.109 4.109 12 C 0.049 3.951 13 N -0.539 5.539 14 C 0.057 3.943 15 C -0.102 4.102 16 C 0.069 3.931 17 O -0.401 6.401 18 C 0.074 3.926 19 C -0.148 4.148 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.127 4.127 23 C 0.059 3.941 24 H 0.261 0.739 25 H 0.047 0.953 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.614 -21.900 10.650 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.573 4.573 8 H 0.074 0.926 9 C 0.018 3.982 10 H 0.021 0.979 11 C -0.148 4.148 12 C -0.078 4.078 13 N -0.263 5.263 14 C -0.071 4.071 15 C -0.140 4.140 16 C -0.008 4.008 17 O -0.321 6.321 18 C 0.017 3.983 19 C -0.186 4.186 20 C -0.157 4.157 21 C -0.160 4.160 22 C -0.164 4.164 23 C -0.068 4.068 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.093 -22.150 10.192 24.909 hybrid contribution 0.583 1.850 0.469 1.995 sum 5.677 -20.300 10.661 23.622 Atomic orbital electron populations 1.70090 1.07326 1.27402 1.50884 1.25796 0.95705 1.02579 0.94598 0.85619 0.78356 0.78797 0.78933 1.19454 1.21014 1.19556 1.21367 0.93025 0.91638 1.51317 0.92552 1.19692 0.92942 0.92268 0.93268 0.97917 1.22483 1.00197 0.93625 0.98514 1.22805 0.94637 0.93715 0.96675 1.63550 1.09344 1.20780 1.32615 1.22137 0.96606 0.93672 0.94679 1.21346 0.98714 0.94681 0.99307 1.22433 0.94472 0.86017 0.97837 1.87928 1.43799 1.33522 1.66823 1.23022 0.94124 0.90456 0.90694 1.22902 1.00372 0.95837 0.99500 1.22446 0.96915 0.96955 0.99424 1.22346 0.97086 0.95039 1.01502 1.22283 0.99337 0.95584 0.99219 1.22947 0.95284 0.90361 0.98242 0.92991 0.93384 0.94820 0.91569 0.92462 0.90040 0.94912 0.92182 0.91284 0.92304 0.92826 0.91235 0.91740 0.90885 0.90315 0.90618 0.90045 0.91979 0.89883 0.91756 0.94427 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.02 12.12 21.45 0.26 -53.76 16 2 C 0.01 0.69 5.34 84.65 0.45 1.15 16 3 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.54 -29.86 8.55 25.60 0.22 -29.65 16 8 H 0.06 3.05 7.79 -2.92 -0.02 3.03 16 9 C 0.04 1.94 2.96 -10.15 -0.03 1.91 16 10 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 11 C -0.11 -5.30 5.64 31.78 0.18 -5.12 16 12 C 0.05 1.94 6.21 86.65 0.54 2.48 16 13 N -0.54 -20.37 5.16 -885.54 -4.57 -24.94 16 14 C 0.06 1.71 4.54 86.30 0.39 2.10 16 15 C -0.10 -2.72 5.61 30.59 0.17 -2.54 16 16 C 0.07 1.54 5.78 71.98 0.42 1.95 16 17 O -0.40 -9.62 9.90 -148.98 -1.47 -11.09 16 18 C 0.07 1.35 3.39 31.32 0.11 1.45 16 19 C -0.15 -2.33 6.56 31.67 0.21 -2.12 16 20 C -0.12 -1.43 6.91 31.89 0.22 -1.21 16 21 C -0.12 -1.57 6.83 31.67 0.22 -1.35 16 22 C -0.13 -2.00 6.61 31.32 0.21 -1.79 16 23 C 0.06 2.52 6.13 86.77 0.53 3.05 16 24 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 25 H 0.05 2.53 7.53 -2.39 -0.02 2.52 16 26 H 0.03 1.68 8.03 -2.38 -0.02 1.66 16 27 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.06 2.02 6.91 -2.39 -0.02 2.00 16 29 H 0.08 2.21 8.07 -2.39 -0.02 2.19 16 30 H 0.03 0.98 7.96 -2.39 -0.02 0.96 16 31 H 0.06 1.70 7.14 -2.38 -0.02 1.68 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 35 H 0.07 1.12 7.80 -2.39 -0.02 1.10 16 36 H 0.06 1.19 8.08 -2.38 -0.02 1.17 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.06 1.20 7.95 -2.39 -0.02 1.18 16 44 H 0.04 1.58 7.70 -2.39 -0.02 1.56 16 45 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -61.55 350.02 0.98 -60.57 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.91 Total: 13.12 kcal Atomic # 6 Polarization: -33.52 SS G_CDS: 3.83 Total: -29.69 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -4.31 Total: -78.70 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -1.47 Total: -11.09 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -61.55 0.98 -60.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699951413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.751 kcal (2) G-P(sol) polarization free energy of solvation -61.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds