Wall clock time and date at job start Mon Mar 30 2020 07:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00525 * 2 1 4 4 H 1.48499 * 109.47133 * 274.98060 * 3 2 1 5 5 H 1.48507 * 109.47210 * 34.97704 * 3 2 1 6 6 H 1.48499 * 109.47547 * 154.97635 * 3 2 1 7 7 C 1.37877 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00524 * 188.40251 * 7 2 1 9 9 C 1.50702 * 119.99756 * 8.40014 * 7 2 1 10 10 H 1.09001 * 110.28864 * 305.32706 * 9 7 2 11 11 C 1.54256 * 110.32519 * 67.45627 * 9 7 2 12 12 C 1.54379 * 105.06072 * 118.99633 * 11 9 7 13 13 N 1.48554 * 104.59518 * 23.85332 * 12 11 9 14 14 C 1.46906 * 111.00254 * 200.95655 * 13 12 11 15 15 C 1.52999 * 109.47257 * 290.13123 * 14 13 12 16 16 C 1.52993 * 109.47066 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.47481 * 179.97438 * 16 15 14 18 18 C 1.42902 * 114.00702 * 180.02562 * 17 16 15 19 19 C 1.54273 * 110.02996 * 267.91134 * 18 17 16 20 20 C 1.54967 * 104.15605 * 217.13375 * 19 18 17 21 21 C 1.54887 * 102.77789 * 37.88624 * 20 19 18 22 22 C 1.53875 * 110.03505 * 150.69010 * 18 17 16 23 23 C 1.48819 * 104.23632 * 320.49101 * 13 12 11 24 24 H 0.97004 * 119.99431 * 0.02562 * 1 2 3 25 25 H 1.08996 * 110.32834 * 237.89121 * 11 9 7 26 26 H 1.09002 * 110.32305 * 0.09860 * 11 9 7 27 27 H 1.09003 * 110.40948 * 142.63385 * 12 11 9 28 28 H 1.09001 * 110.41116 * 264.95699 * 12 11 9 29 29 H 1.09010 * 109.46610 * 50.12805 * 14 13 12 30 30 H 1.08989 * 109.47246 * 170.12343 * 14 13 12 31 31 H 1.08996 * 109.46862 * 299.99540 * 15 14 13 32 32 H 1.09003 * 109.47083 * 59.99666 * 15 14 13 33 33 H 1.09006 * 109.47760 * 299.99874 * 16 15 14 34 34 H 1.08997 * 109.47496 * 59.99851 * 16 15 14 35 35 H 1.08998 * 110.00875 * 29.29657 * 18 17 16 36 36 H 1.09000 * 110.48296 * 335.77625 * 19 18 17 37 37 H 1.08997 * 110.48920 * 98.42376 * 19 18 17 38 38 H 1.09006 * 110.71610 * 279.57241 * 20 19 18 39 39 H 1.08995 * 110.91887 * 156.29529 * 20 19 18 40 40 H 1.09006 * 110.48289 * 203.40429 * 21 20 19 41 41 H 1.08999 * 110.48547 * 80.76480 * 21 20 19 42 42 H 1.08995 * 110.02959 * 238.57286 * 22 18 17 43 43 H 1.08997 * 110.02909 * 359.97438 * 22 18 17 44 44 H 1.08995 * 110.45469 * 280.76856 * 23 13 12 45 45 H 1.09009 * 110.49598 * 158.24850 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3915 2.1070 -1.3948 5 1 1.5033 2.6200 0.8026 6 1 3.5954 1.4119 0.5922 7 6 2.0044 -1.1941 0.0005 8 1 3.0757 -1.1992 0.1372 9 6 1.2630 -2.4922 -0.1895 10 1 0.4623 -2.5811 0.5447 11 6 0.6907 -2.5780 -1.6195 12 6 1.3625 -3.8183 -2.2467 13 7 1.7497 -4.6613 -1.0864 14 6 2.8110 -5.6081 -1.4543 15 6 2.2419 -6.6712 -2.3961 16 6 3.3473 -7.6570 -2.7797 17 8 2.8158 -8.6502 -3.6588 18 6 3.7715 -9.6259 -4.0793 19 6 4.4294 -9.1849 -5.4032 20 6 4.6106 -10.5050 -6.1945 21 6 3.3226 -11.2921 -5.8473 22 6 3.0684 -10.9653 -4.3613 23 6 2.2340 -3.6866 -0.0713 24 1 -0.4849 0.8401 -0.0004 25 1 -0.3909 -2.7090 -1.5872 26 1 0.9476 -1.6819 -2.1844 27 1 0.6572 -4.3507 -2.8849 28 1 2.2440 -3.5255 -2.8171 29 1 3.6176 -5.0730 -1.9555 30 1 3.1972 -6.0883 -0.5553 31 1 1.4354 -7.2063 -1.8949 32 1 1.8557 -6.1910 -3.2951 33 1 4.1537 -7.1216 -3.2811 34 1 3.7339 -8.1373 -1.8809 35 1 4.5324 -9.7583 -3.3101 36 1 3.7752 -8.5021 -5.9453 37 1 5.3956 -8.7181 -5.2121 38 1 5.4954 -11.0416 -5.8518 39 1 4.6684 -10.3118 -7.2656 40 1 3.4818 -12.3621 -5.9808 41 1 2.4893 -10.9499 -6.4611 42 1 3.4886 -11.7478 -3.7296 43 1 1.9982 -10.8711 -4.1770 44 1 3.2524 -3.3727 -0.3001 45 1 2.1841 -4.1196 0.9278 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699951414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:15 Heat of formation + Delta-G solvation = -86.435817 kcal Electronic energy + Delta-G solvation = -20206.888740 eV Core-core repulsion = 17222.270016 eV Total energy + Delta-G solvation = -2984.618723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.07223 -39.64624 -37.14563 -35.48177 -33.81381 -31.05818 -29.92394 -29.63112 -28.49187 -26.71078 -25.13851 -22.85352 -21.68083 -21.61049 -21.26303 -20.93079 -18.38910 -17.92399 -17.03578 -16.72308 -16.57825 -16.44609 -16.02508 -15.39641 -15.01224 -14.79573 -14.31311 -14.24618 -13.95879 -13.78876 -13.32381 -13.05431 -13.01486 -12.61813 -12.54836 -12.29375 -12.20165 -12.17704 -12.01700 -11.99570 -11.90275 -11.72875 -11.57954 -11.49081 -11.43509 -11.12574 -10.81074 -10.50486 -10.41694 -9.36126 -8.15435 -6.24252 1.40247 1.41266 1.51712 2.41394 2.61518 3.15386 3.29688 3.66825 3.68868 3.94399 4.02781 4.07938 4.18811 4.24719 4.33366 4.41150 4.47447 4.51516 4.53968 4.58643 4.60361 4.65742 4.69305 4.78778 4.81614 4.86498 4.96641 5.00815 5.03893 5.12179 5.15053 5.20932 5.24248 5.26768 5.29752 5.34550 5.45015 5.58553 5.72778 5.84938 5.96106 6.24704 6.39054 6.40628 6.86977 7.42688 8.94851 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.047145 B = 0.002703 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.768917 B =10355.327755 C =10494.698930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.055 0.945 9 C 0.037 3.963 10 H 0.002 0.998 11 C -0.094 4.094 12 C 0.046 3.954 13 N -0.522 5.522 14 C 0.050 3.950 15 C -0.103 4.103 16 C 0.069 3.931 17 O -0.401 6.401 18 C 0.075 3.925 19 C -0.150 4.150 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.125 4.125 23 C 0.052 3.948 24 H 0.261 0.739 25 H 0.031 0.969 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.036 0.964 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.070 -21.210 -10.535 25.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.073 0.927 9 C 0.018 3.982 10 H 0.020 0.980 11 C -0.132 4.132 12 C -0.082 4.082 13 N -0.246 5.246 14 C -0.078 4.078 15 C -0.141 4.141 16 C -0.007 4.007 17 O -0.321 6.321 18 C 0.018 3.982 19 C -0.188 4.188 20 C -0.157 4.157 21 C -0.160 4.160 22 C -0.163 4.163 23 C -0.076 4.076 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.288 -21.435 -10.381 25.563 hybrid contribution 0.869 1.791 -0.038 1.991 sum 10.157 -19.644 -10.419 24.446 Atomic orbital electron populations 1.70124 1.07454 1.27380 1.50892 1.25780 0.95574 1.02575 0.94709 0.85602 0.78907 0.79396 0.78130 1.20131 1.20978 1.19004 1.21512 0.93733 0.91943 1.49833 0.92687 1.19349 0.93586 0.92249 0.92984 0.98007 1.22129 0.97618 0.95357 0.98135 1.23029 0.98853 0.93413 0.92923 1.65398 1.35578 1.14758 1.08837 1.22152 0.92476 0.93964 0.99226 1.21316 0.98373 0.95412 0.98977 1.22430 0.95856 0.89494 0.92960 1.87924 1.37720 1.40422 1.66048 1.23018 0.90762 0.88551 0.95894 1.22926 1.00637 0.98784 0.96413 1.22454 0.98217 0.94888 1.00188 1.22348 0.97831 1.00871 0.94948 1.22270 1.01236 0.94972 0.97823 1.23104 0.97020 0.92129 0.95324 0.92975 0.95016 0.94315 0.90169 0.94258 0.94565 0.89881 0.91313 0.92205 0.92901 0.92133 0.91053 0.91961 0.90981 0.90259 0.90762 0.89971 0.92078 0.89700 0.91694 0.94575 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.71 13.04 21.45 0.28 -54.43 16 2 C 0.01 0.71 5.17 84.66 0.44 1.15 16 3 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.53 -29.65 8.27 25.60 0.21 -29.44 16 8 H 0.05 2.99 7.55 -2.91 -0.02 2.97 16 9 C 0.04 1.95 2.83 -10.64 -0.03 1.92 16 10 H 0.00 0.10 8.12 -2.39 -0.02 0.08 16 11 C -0.09 -4.53 6.24 31.49 0.20 -4.33 16 12 C 0.05 1.77 5.73 86.45 0.50 2.27 16 13 N -0.52 -19.57 5.38 -880.77 -4.73 -24.30 16 14 C 0.05 1.46 4.81 86.30 0.42 1.87 16 15 C -0.10 -2.68 5.64 30.59 0.17 -2.51 16 16 C 0.07 1.51 5.78 71.98 0.42 1.92 16 17 O -0.40 -9.49 9.90 -148.98 -1.47 -10.96 16 18 C 0.08 1.33 3.38 31.32 0.11 1.44 16 19 C -0.15 -2.39 6.57 31.70 0.21 -2.18 16 20 C -0.12 -1.45 6.91 31.91 0.22 -1.23 16 21 C -0.12 -1.56 6.83 31.67 0.22 -1.34 16 22 C -0.13 -1.92 6.61 31.32 0.21 -1.71 16 23 C 0.05 2.20 6.04 86.40 0.52 2.72 16 24 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 25 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.04 2.00 7.58 -2.39 -0.02 1.98 16 27 H 0.08 2.83 7.76 -2.39 -0.02 2.81 16 28 H 0.04 1.46 7.83 -2.39 -0.02 1.45 16 29 H 0.04 1.03 7.88 -2.38 -0.02 1.01 16 30 H 0.08 2.19 8.13 -2.39 -0.02 2.17 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.67 7.26 -2.39 -0.02 1.65 16 33 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 35 H 0.07 1.10 7.81 -2.39 -0.02 1.08 16 36 H 0.06 1.19 8.08 -2.39 -0.02 1.17 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 0.77 8.14 -2.38 -0.02 0.76 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 1.18 7.95 -2.39 -0.02 1.16 16 44 H 0.04 1.51 7.54 -2.39 -0.02 1.50 16 45 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 Total: -1.00 -62.35 351.31 0.80 -61.55 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.91 Total: 11.70 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: 3.80 Total: -29.45 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -4.46 Total: -78.73 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -1.47 Total: -10.96 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -62.35 0.80 -61.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699951414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.884 kcal (2) G-P(sol) polarization free energy of solvation -62.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds