Wall clock time and date at job start Mon Mar 30 2020 07:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 119.99755 * 2 1 4 4 H 1.48501 * 109.46994 * 269.99500 * 3 2 1 5 5 H 1.48504 * 109.47255 * 29.99535 * 3 2 1 6 6 H 1.48498 * 109.47029 * 150.00087 * 3 2 1 7 7 C 1.37873 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99893 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00114 * 0.02562 * 7 2 1 10 10 C 1.53122 * 109.52232 * 180.02562 * 9 7 2 11 11 C 1.53038 * 109.27711 * 177.62442 * 10 9 7 12 12 N 1.46850 * 109.52042 * 300.82281 * 11 10 9 13 13 C 1.46906 * 110.99711 * 185.84331 * 12 11 10 14 14 C 1.52994 * 109.47151 * 75.79772 * 13 12 11 15 15 O 1.42899 * 109.47195 * 65.02489 * 14 13 12 16 16 C 1.42903 * 114.00432 * 179.97438 * 15 14 13 17 17 C 1.55235 * 110.47034 * 264.81187 * 16 15 14 18 18 C 1.54886 * 102.58701 * 203.39249 * 17 16 15 19 19 C 1.54268 * 104.31627 * 37.92944 * 18 17 16 20 20 C 1.53873 * 106.59623 * 336.32636 * 19 18 17 21 21 C 1.46845 * 111.20249 * 61.74253 * 12 11 10 22 22 C 1.53034 * 109.52005 * 298.25727 * 21 12 11 23 23 H 0.96996 * 120.00135 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.52198 * 59.87498 * 9 7 2 25 25 H 1.08995 * 109.50450 * 57.67967 * 10 9 7 26 26 H 1.08997 * 109.53108 * 297.58368 * 10 9 7 27 27 H 1.08990 * 109.46224 * 180.80465 * 11 10 9 28 28 H 1.09002 * 109.45463 * 60.82605 * 11 10 9 29 29 H 1.08998 * 109.46738 * 315.80025 * 13 12 11 30 30 H 1.08996 * 109.46573 * 195.80328 * 13 12 11 31 31 H 1.08997 * 109.47620 * 305.02448 * 14 13 12 32 32 H 1.09001 * 109.47134 * 185.01945 * 14 13 12 33 33 H 1.09001 * 110.43126 * 27.45793 * 16 15 14 34 34 H 1.08997 * 110.90462 * 85.09611 * 17 16 15 35 35 H 1.09011 * 110.76415 * 321.62030 * 17 16 15 36 36 H 1.08995 * 110.48546 * 279.18103 * 18 17 16 37 37 H 1.09002 * 110.48940 * 156.67551 * 18 17 16 38 38 H 1.09000 * 110.03235 * 95.60352 * 19 18 17 39 39 H 1.08992 * 110.03063 * 216.99334 * 19 18 17 40 40 H 1.08995 * 110.03706 * 119.28285 * 20 19 18 41 41 H 1.08998 * 110.03472 * 240.66813 * 20 19 18 42 42 H 1.09000 * 109.45929 * 58.27220 * 21 12 11 43 43 H 1.08999 * 109.45728 * 178.24284 * 21 12 11 44 44 H 1.08999 * 109.50783 * 299.23959 * 22 21 12 45 45 H 1.09001 * 109.50014 * 179.12276 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6639 0.0018 11 6 1.4752 -4.9851 0.0617 12 7 0.6524 -5.0189 1.2776 13 6 0.0060 -6.3281 1.4395 14 6 1.0356 -7.3481 1.9296 15 8 1.4824 -6.9834 3.2370 16 6 2.4513 -7.8763 3.7904 17 6 1.7616 -8.9337 4.6937 18 6 2.9097 -9.3732 5.6359 19 6 3.6897 -8.0727 5.9191 20 6 3.3982 -7.1209 4.7457 21 6 -0.3414 -3.9378 1.2765 22 6 0.3744 -2.5854 1.2529 23 1 -0.4850 0.8400 -0.0004 24 1 0.6228 -2.5570 -0.8882 25 1 2.8985 -3.5837 0.8705 26 1 2.8442 -3.6327 -0.9082 27 1 2.1804 -5.8160 0.0772 28 1 0.8323 -5.0707 -0.8143 29 1 -0.4004 -6.6535 0.4819 30 1 -0.8007 -6.2473 2.1680 31 1 1.8850 -7.3640 1.2467 32 1 0.5790 -8.3373 1.9645 33 1 3.0183 -8.3621 2.9963 34 1 1.4032 -9.7762 4.1023 35 1 0.9465 -8.4845 5.2614 36 1 3.5509 -10.1026 5.1413 37 1 2.5072 -9.7858 6.5611 38 1 3.3479 -7.6283 6.8539 39 1 4.7578 -8.2825 5.9742 40 1 2.9150 -6.2148 5.1110 41 1 4.3250 -6.8680 4.2309 42 1 -0.9757 -4.0286 0.3947 43 1 -0.9554 -4.0082 2.1743 44 1 0.9984 -2.4882 2.1413 45 1 -0.3636 -1.7834 1.2364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701397866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:21 Heat of formation + Delta-G solvation = -67.379054 kcal Electronic energy + Delta-G solvation = -21061.709320 eV Core-core repulsion = 18077.916960 eV Total energy + Delta-G solvation = -2983.792360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.99404 -38.06914 -35.96858 -33.83369 -31.51950 -29.85899 -28.91405 -28.68170 -27.17408 -25.24907 -22.69713 -21.78103 -20.82412 -20.74394 -20.28673 -18.50692 -16.96101 -16.37984 -15.83716 -15.59824 -14.84712 -14.59936 -14.21228 -13.86668 -13.78035 -13.39151 -13.05952 -12.69670 -12.51103 -12.34578 -12.05705 -11.80161 -11.53778 -11.29079 -11.24450 -11.22843 -10.89846 -10.86104 -10.68422 -10.61821 -10.46277 -10.34019 -10.12040 -9.87469 -9.36499 -9.27753 -8.86675 -8.63603 -8.23000 -7.60710 -5.91383 -3.96396 3.35085 3.41672 3.45676 3.80816 4.45896 4.49558 4.50823 4.54304 4.79991 5.12044 5.24267 5.33947 5.37921 5.38703 5.43763 5.47731 5.53290 5.57633 5.69182 5.73800 5.82133 5.86708 5.92705 5.98383 6.01379 6.11549 6.18546 6.19474 6.21514 6.30001 6.41765 6.69187 6.70687 6.93723 7.16103 7.26432 7.46010 7.54853 7.70928 7.81878 7.91710 8.13323 8.23729 8.55363 9.07279 9.67590 11.14805 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026830 B = 0.003866 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.351627 B = 7240.261031 C = 7788.325922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.105 4.105 11 C 0.059 3.941 12 N -0.525 5.525 13 C 0.054 3.946 14 C 0.072 3.928 15 O -0.357 6.357 16 C 0.083 3.917 17 C -0.146 4.146 18 C -0.123 4.123 19 C -0.122 4.122 20 C -0.123 4.123 21 C 0.059 3.941 22 C -0.103 4.103 23 H 0.258 0.742 24 H 0.019 0.981 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.021 0.979 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.019 0.981 43 H 0.055 0.945 44 H 0.043 0.957 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.671 -18.200 7.451 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.143 4.143 11 C -0.068 4.068 12 N -0.251 5.251 13 C -0.075 4.075 14 C -0.005 4.005 15 O -0.275 6.275 16 C 0.024 3.976 17 C -0.184 4.184 18 C -0.161 4.161 19 C -0.160 4.160 20 C -0.161 4.161 21 C -0.068 4.068 22 C -0.141 4.141 23 H 0.068 0.932 24 H 0.037 0.963 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.762 -17.820 7.950 19.708 hybrid contribution -0.027 0.497 -0.881 1.012 sum 2.734 -17.323 7.069 18.909 Atomic orbital electron populations 1.69884 1.05849 1.26212 1.51254 1.24970 0.94838 0.98968 0.95286 0.86638 0.79950 0.83717 0.77943 1.20867 1.21311 1.19956 1.21221 0.92869 0.90719 1.49888 0.92802 1.18677 0.92695 0.91704 0.93957 1.21658 0.98713 0.93789 1.00145 1.22159 0.95897 0.99189 0.89579 1.61923 1.23542 1.01565 1.38020 1.22090 0.95761 0.90507 0.99146 1.22540 0.97169 0.96184 0.84651 1.88077 1.58746 1.49935 1.30776 1.23006 0.89662 0.90179 0.94733 1.23047 0.98515 0.98571 0.98267 1.22266 0.97088 0.97361 0.99399 1.22084 0.99967 0.95454 0.98501 1.22167 0.98847 0.99382 0.95696 1.22270 0.92967 0.93124 0.98429 1.21645 1.00147 0.92982 0.99375 0.93168 0.96278 0.92477 0.93410 0.92738 0.96066 0.93970 0.90611 0.93524 0.94002 0.92136 0.91868 0.90507 0.91781 0.91654 0.91639 0.91841 0.90163 0.91388 0.96231 0.92649 0.93768 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 11.37 55.43 0.63 -25.24 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.30 8.57 -34.44 -0.29 -14.60 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.23 2.16 -91.65 -0.20 1.03 16 10 C -0.11 -2.30 5.32 -26.65 -0.14 -2.44 16 11 C 0.06 1.11 5.29 -3.83 -0.02 1.09 16 12 N -0.53 -9.85 4.53 -234.68 -1.06 -10.91 16 13 C 0.05 0.81 5.39 -3.82 -0.02 0.79 16 14 C 0.07 0.96 5.97 37.15 0.22 1.18 16 15 O -0.36 -5.36 10.00 -35.23 -0.35 -5.71 16 16 C 0.08 0.98 3.36 -24.88 -0.08 0.90 16 17 C -0.15 -1.45 6.65 -24.55 -0.16 -1.62 16 18 C -0.12 -1.04 6.82 -25.07 -0.17 -1.21 16 19 C -0.12 -1.11 6.80 -25.61 -0.17 -1.29 16 20 C -0.12 -1.41 6.56 -25.61 -0.17 -1.58 16 21 C 0.06 1.22 5.43 -3.84 -0.02 1.20 16 22 C -0.10 -2.53 5.12 -26.65 -0.14 -2.66 16 23 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.91 6.65 -51.93 -0.35 0.56 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.59 8.00 -51.93 -0.42 0.17 16 30 H 0.08 1.12 7.79 -51.93 -0.40 0.72 16 31 H 0.05 0.62 6.67 -51.93 -0.35 0.28 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.67 7.82 -51.93 -0.41 0.27 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 1.05 8.07 -51.93 -0.42 0.63 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 44 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 LS Contribution 344.63 15.07 5.19 5.19 Total: -1.00 -29.37 344.63 -10.61 -39.97 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -8.53 Total: -2.35 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -1.47 Total: -17.61 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.43 Total: -36.15 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.35 Total: -5.71 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.37 -10.61 -39.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701397866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.406 kcal (2) G-P(sol) polarization free energy of solvation -29.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds