Wall clock time and date at job start Mon Mar 30 2020 07:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 119.99755 * 2 1 4 4 H 1.48501 * 109.46994 * 269.99500 * 3 2 1 5 5 H 1.48504 * 109.47255 * 29.99535 * 3 2 1 6 6 H 1.48498 * 109.47029 * 150.00087 * 3 2 1 7 7 C 1.37873 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99893 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00114 * 0.02562 * 7 2 1 10 10 C 1.53122 * 109.52232 * 180.02562 * 9 7 2 11 11 C 1.53038 * 109.27711 * 177.62442 * 10 9 7 12 12 N 1.46850 * 109.52042 * 300.82281 * 11 10 9 13 13 C 1.46906 * 110.99711 * 185.84331 * 12 11 10 14 14 C 1.52994 * 109.47151 * 75.79772 * 13 12 11 15 15 O 1.42899 * 109.47195 * 65.02489 * 14 13 12 16 16 C 1.42903 * 114.00432 * 179.97438 * 15 14 13 17 17 C 1.55235 * 110.47034 * 264.81187 * 16 15 14 18 18 C 1.54886 * 102.58701 * 203.39249 * 17 16 15 19 19 C 1.54268 * 104.31627 * 37.92944 * 18 17 16 20 20 C 1.53873 * 106.59623 * 336.32636 * 19 18 17 21 21 C 1.46845 * 111.20249 * 61.74253 * 12 11 10 22 22 C 1.53034 * 109.52005 * 298.25727 * 21 12 11 23 23 H 0.96996 * 120.00135 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.52198 * 59.87498 * 9 7 2 25 25 H 1.08995 * 109.50450 * 57.67967 * 10 9 7 26 26 H 1.08997 * 109.53108 * 297.58368 * 10 9 7 27 27 H 1.08990 * 109.46224 * 180.80465 * 11 10 9 28 28 H 1.09002 * 109.45463 * 60.82605 * 11 10 9 29 29 H 1.08998 * 109.46738 * 315.80025 * 13 12 11 30 30 H 1.08996 * 109.46573 * 195.80328 * 13 12 11 31 31 H 1.08997 * 109.47620 * 305.02448 * 14 13 12 32 32 H 1.09001 * 109.47134 * 185.01945 * 14 13 12 33 33 H 1.09001 * 110.43126 * 27.45793 * 16 15 14 34 34 H 1.08997 * 110.90462 * 85.09611 * 17 16 15 35 35 H 1.09011 * 110.76415 * 321.62030 * 17 16 15 36 36 H 1.08995 * 110.48546 * 279.18103 * 18 17 16 37 37 H 1.09002 * 110.48940 * 156.67551 * 18 17 16 38 38 H 1.09000 * 110.03235 * 95.60352 * 19 18 17 39 39 H 1.08992 * 110.03063 * 216.99334 * 19 18 17 40 40 H 1.08995 * 110.03706 * 119.28285 * 20 19 18 41 41 H 1.08998 * 110.03472 * 240.66813 * 20 19 18 42 42 H 1.09000 * 109.45929 * 58.27220 * 21 12 11 43 43 H 1.08999 * 109.45728 * 178.24284 * 21 12 11 44 44 H 1.08999 * 109.50783 * 299.23959 * 22 21 12 45 45 H 1.09001 * 109.50014 * 179.12276 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6639 0.0018 11 6 1.4752 -4.9851 0.0617 12 7 0.6524 -5.0189 1.2776 13 6 0.0060 -6.3281 1.4395 14 6 1.0356 -7.3481 1.9296 15 8 1.4824 -6.9834 3.2370 16 6 2.4513 -7.8763 3.7904 17 6 1.7616 -8.9337 4.6937 18 6 2.9097 -9.3732 5.6359 19 6 3.6897 -8.0727 5.9191 20 6 3.3982 -7.1209 4.7457 21 6 -0.3414 -3.9378 1.2765 22 6 0.3744 -2.5854 1.2529 23 1 -0.4850 0.8400 -0.0004 24 1 0.6228 -2.5570 -0.8882 25 1 2.8985 -3.5837 0.8705 26 1 2.8442 -3.6327 -0.9082 27 1 2.1804 -5.8160 0.0772 28 1 0.8323 -5.0707 -0.8143 29 1 -0.4004 -6.6535 0.4819 30 1 -0.8007 -6.2473 2.1680 31 1 1.8850 -7.3640 1.2467 32 1 0.5790 -8.3373 1.9645 33 1 3.0183 -8.3621 2.9963 34 1 1.4032 -9.7762 4.1023 35 1 0.9465 -8.4845 5.2614 36 1 3.5509 -10.1026 5.1413 37 1 2.5072 -9.7858 6.5611 38 1 3.3479 -7.6283 6.8539 39 1 4.7578 -8.2825 5.9742 40 1 2.9150 -6.2148 5.1110 41 1 4.3250 -6.8680 4.2309 42 1 -0.9757 -4.0286 0.3947 43 1 -0.9554 -4.0082 2.1743 44 1 0.9984 -2.4882 2.1413 45 1 -0.3636 -1.7834 1.2364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701397866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:20 Heat of formation + Delta-G solvation = -84.045585 kcal Electronic energy + Delta-G solvation = -21062.432035 eV Core-core repulsion = 18077.916960 eV Total energy + Delta-G solvation = -2984.515075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.12996 -39.42837 -37.01836 -35.60638 -33.37942 -31.55055 -30.19730 -29.56910 -28.20110 -27.06450 -24.29627 -23.53679 -22.18437 -21.58747 -21.10700 -20.34185 -18.45411 -17.94202 -17.05154 -16.62860 -16.52598 -15.94522 -15.47212 -15.21992 -15.07394 -14.83336 -14.32348 -14.21089 -14.14730 -13.77056 -13.34621 -13.06819 -12.92574 -12.80659 -12.77004 -12.39046 -12.18871 -12.09372 -12.01949 -11.92973 -11.84597 -11.74609 -11.43329 -11.35695 -11.28484 -10.76277 -10.65727 -10.36593 -10.23740 -9.08493 -8.07370 -6.20798 1.40638 1.41678 1.52190 2.44221 2.84869 3.07298 3.19322 3.71802 3.76054 4.00919 4.12550 4.17671 4.25069 4.33945 4.39724 4.47639 4.54069 4.56760 4.59738 4.64239 4.65011 4.74282 4.81217 4.83578 4.90680 4.93817 4.97907 5.01778 5.09691 5.12176 5.22686 5.24575 5.27308 5.33022 5.35690 5.48591 5.57501 5.63629 6.01224 6.04373 6.32881 6.35746 6.41871 6.58610 6.90566 7.46713 8.97244 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026830 B = 0.003866 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.351627 B = 7240.261031 C = 7788.325922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.045 3.955 10 C -0.099 4.099 11 C 0.067 3.933 12 N -0.537 5.537 13 C 0.052 3.948 14 C 0.074 3.926 15 O -0.387 6.387 16 C 0.075 3.925 17 C -0.142 4.142 18 C -0.119 4.119 19 C -0.120 4.120 20 C -0.128 4.128 21 C 0.071 3.929 22 C -0.094 4.094 23 H 0.260 0.740 24 H -0.011 1.011 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.023 0.977 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.017 0.983 43 H 0.068 0.932 44 H 0.025 0.975 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.378 -20.156 7.757 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.027 3.973 10 C -0.136 4.136 11 C -0.061 4.061 12 N -0.263 5.263 13 C -0.075 4.075 14 C -0.003 4.003 15 O -0.307 6.307 16 C 0.018 3.982 17 C -0.180 4.180 18 C -0.156 4.156 19 C -0.157 4.157 20 C -0.166 4.166 21 C -0.057 4.057 22 C -0.132 4.132 23 H 0.069 0.931 24 H 0.008 0.992 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.035 0.965 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.474 -19.798 8.257 21.730 hybrid contribution -0.247 1.111 -0.973 1.497 sum 3.227 -18.687 7.284 20.314 Atomic orbital electron populations 1.70020 1.07130 1.27040 1.51554 1.25755 0.95720 1.02375 0.94850 0.85620 0.78735 0.79469 0.78216 1.20058 1.20815 1.19452 1.21592 0.92955 0.92351 1.50327 0.93232 1.18644 0.93123 0.92579 0.92964 1.21522 0.97983 0.94264 0.99875 1.22067 0.96170 0.98058 0.89766 1.61860 1.23501 1.02886 1.38024 1.22209 0.96328 0.88755 1.00235 1.22564 0.96864 0.96730 0.84119 1.88040 1.59647 1.51491 1.31507 1.23210 0.89520 0.90293 0.95216 1.23005 0.98539 0.98240 0.98198 1.22273 0.96540 0.97071 0.99719 1.22080 1.00997 0.95321 0.97336 1.22208 0.98552 0.99080 0.96719 1.22016 0.92921 0.91816 0.98915 1.21402 0.99099 0.94751 0.97971 0.93088 0.99245 0.93583 0.92855 0.89872 0.95844 0.92168 0.90437 0.93370 0.91110 0.91123 0.90508 0.91760 0.90447 0.90484 0.91670 0.90535 0.92693 0.91561 0.96486 0.91405 0.95611 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.50 11.37 21.45 0.24 -54.25 16 2 C 0.01 0.64 5.31 84.65 0.45 1.09 16 3 Si 0.95 44.96 29.54 68.60 2.03 46.99 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.53 -30.78 8.57 25.60 0.22 -30.56 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 9 C 0.05 2.39 2.16 -11.46 -0.02 2.37 16 10 C -0.10 -4.31 5.32 30.65 0.16 -4.15 16 11 C 0.07 2.41 5.29 86.33 0.46 2.87 16 12 N -0.54 -19.54 4.53 -896.38 -4.06 -23.60 16 13 C 0.05 1.46 5.39 86.30 0.47 1.92 16 14 C 0.07 1.78 5.97 71.98 0.43 2.21 16 15 O -0.39 -11.07 10.00 -148.98 -1.49 -12.56 16 16 C 0.08 1.67 3.36 31.79 0.11 1.77 16 17 C -0.14 -2.51 6.65 32.01 0.21 -2.29 16 18 C -0.12 -1.68 6.82 31.67 0.22 -1.46 16 19 C -0.12 -1.97 6.80 31.32 0.21 -1.76 16 20 C -0.13 -2.85 6.56 31.32 0.21 -2.64 16 21 C 0.07 2.92 5.43 86.33 0.47 3.39 16 22 C -0.09 -4.74 5.12 30.64 0.16 -4.59 16 23 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 24 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.08 2.54 6.65 -2.39 -0.02 2.53 16 28 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 1.48 8.00 -2.39 -0.02 1.46 16 30 H 0.08 2.14 7.79 -2.39 -0.02 2.12 16 31 H 0.05 1.14 6.67 -2.39 -0.02 1.12 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.40 7.82 -2.39 -0.02 1.38 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.05 1.48 8.07 -2.39 -0.02 1.46 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 44 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.06 3.43 6.17 -2.39 -0.01 3.41 16 Total: -1.00 -64.30 344.63 1.37 -62.93 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.91 Total: 12.33 kcal Atomic # 6 Polarization: -35.56 SS G_CDS: 3.74 Total: -31.83 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -3.82 Total: -77.86 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -1.49 Total: -12.56 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.30 1.37 -62.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701397866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.118 kcal (2) G-P(sol) polarization free energy of solvation -64.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds