Wall clock time and date at job start Mon Mar 30 2020 07:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99822 * 2 1 4 4 H 1.48508 * 109.47022 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47137 * 299.99820 * 3 2 1 6 6 H 1.48493 * 109.47448 * 60.00234 * 3 2 1 7 7 C 1.37878 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99991 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47222 * 174.20075 * 9 7 2 11 11 C 1.46904 * 110.99848 * 159.87456 * 10 9 7 12 12 C 1.53003 * 109.46793 * 189.99985 * 11 10 9 13 13 O 1.42902 * 109.47107 * 64.99560 * 12 11 10 14 14 C 1.42905 * 113.99858 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.46863 * 270.00211 * 14 13 12 16 16 C 1.53004 * 109.47119 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.47144 * 59.99628 * 16 15 14 18 18 C 1.53002 * 109.47177 * 300.00428 * 17 16 15 19 19 C 1.52994 * 109.47070 * 59.99605 * 18 17 16 20 20 C 1.46901 * 110.99853 * 283.82214 * 10 9 7 21 21 C 1.53002 * 117.49454 * 138.01157 * 20 10 9 22 22 C 1.53001 * 117.49738 * 69.35199 * 20 10 9 23 23 H 0.96997 * 120.00121 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47235 * 54.19986 * 9 7 2 25 25 H 1.08996 * 109.46969 * 294.20114 * 9 7 2 26 26 H 1.08992 * 109.47745 * 69.99674 * 11 10 9 27 27 H 1.09006 * 109.47007 * 309.99293 * 11 10 9 28 28 H 1.09001 * 109.46864 * 184.99584 * 12 11 10 29 29 H 1.08995 * 109.47194 * 304.99965 * 12 11 10 30 30 H 1.08997 * 109.46870 * 29.99855 * 14 13 12 31 31 H 1.09007 * 109.47154 * 299.99537 * 15 14 13 32 32 H 1.09000 * 109.47495 * 60.00104 * 15 14 13 33 33 H 1.09006 * 109.46544 * 300.00226 * 16 15 14 34 34 H 1.08994 * 109.47818 * 180.02562 * 16 15 14 35 35 H 1.08997 * 109.46994 * 180.02562 * 17 16 15 36 36 H 1.08996 * 109.46716 * 60.00284 * 17 16 15 37 37 H 1.09007 * 109.47079 * 300.00312 * 18 17 16 38 38 H 1.09000 * 109.47257 * 179.97438 * 18 17 16 39 39 H 1.09005 * 109.47069 * 179.97438 * 19 18 17 40 40 H 1.09007 * 109.47117 * 60.00424 * 19 18 17 41 41 H 1.08994 * 115.55181 * 283.68261 * 20 10 9 42 42 H 1.08995 * 117.50397 * 0.02562 * 21 20 10 43 43 H 1.09003 * 117.49298 * 145.02529 * 21 20 10 44 44 H 1.09001 * 117.50109 * 214.97647 * 22 20 10 45 45 H 1.08999 * 117.49916 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.1997 -3.6122 -0.1388 11 6 1.6039 -4.8727 0.3240 12 6 2.6866 -5.9510 0.3996 13 8 3.6438 -5.5957 1.3995 14 6 4.7035 -6.5421 1.5521 15 6 4.3080 -7.5863 2.5981 16 6 5.4429 -8.5993 2.7620 17 6 6.7111 -7.8751 3.2183 18 6 7.1065 -6.8309 2.1722 19 6 5.9717 -5.8180 2.0084 20 6 2.6721 -3.7308 -1.5247 21 6 4.1602 -4.0125 -1.7420 22 6 3.5894 -2.6272 -2.0553 23 1 -0.4850 0.8400 0.0004 24 1 0.5492 -2.5135 -0.8333 25 1 0.7043 -2.6029 0.9377 26 1 0.8276 -5.1856 -0.3742 27 1 1.1667 -4.7268 1.3118 28 1 2.2301 -6.9068 0.6570 29 1 3.1844 -6.0345 -0.5664 30 1 4.8898 -7.0358 0.5983 31 1 4.1217 -7.0926 3.5519 32 1 3.4044 -8.1019 2.2732 33 1 5.6297 -9.0930 1.8082 34 1 5.1611 -9.3434 3.5068 35 1 7.5197 -8.5967 3.3346 36 1 6.5243 -7.3814 4.1719 37 1 7.2933 -7.3246 1.2185 38 1 8.0097 -6.3146 2.4975 39 1 6.2536 -5.0738 1.2635 40 1 5.7849 -5.3242 2.9621 41 1 1.9675 -4.1794 -2.2248 42 1 4.7886 -4.1102 -0.8568 43 1 4.4345 -4.6462 -2.5855 44 1 3.4884 -2.3500 -3.1046 45 1 3.8419 -1.8128 -1.3762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701398655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:07 Heat of formation + Delta-G solvation = -35.803923 kcal Electronic energy + Delta-G solvation = -21324.084737 eV Core-core repulsion = 18341.661577 eV Total energy + Delta-G solvation = -2982.423160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.09732 -37.72536 -36.06398 -33.54791 -32.42530 -30.83160 -30.02210 -28.43592 -25.91077 -22.72580 -22.24189 -22.18307 -21.76663 -21.50710 -19.83771 -19.28147 -16.63714 -16.44731 -15.44203 -15.24023 -14.84277 -14.49759 -14.41280 -14.23396 -14.00675 -13.39061 -13.29158 -12.76819 -12.35905 -12.28741 -12.17980 -11.97101 -11.70377 -11.21566 -11.18020 -11.02569 -10.94858 -10.77172 -10.74265 -10.58567 -10.46387 -10.33073 -10.19848 -9.85354 -9.47054 -9.10034 -9.03993 -9.00131 -8.32680 -7.15209 -5.93846 -3.92793 3.35747 3.43187 3.48006 3.94712 4.47830 4.64962 4.66297 4.69597 4.85741 4.90680 5.16338 5.17945 5.31771 5.40609 5.43740 5.45929 5.52494 5.58093 5.65443 5.71473 5.71894 5.75937 5.85092 5.91520 5.93031 6.01800 6.11949 6.12994 6.18278 6.24770 6.26485 6.34209 6.37498 6.44518 6.50969 6.80394 7.10650 7.29919 7.45215 7.69087 7.94899 8.21373 8.31640 8.64714 9.14143 9.69526 11.16984 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023864 B = 0.004378 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.015867 B = 6394.324367 C = 6585.563939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.052 3.948 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.491 4.491 8 H 0.068 0.932 9 C 0.194 3.806 10 N -0.499 5.499 11 C 0.060 3.940 12 C 0.072 3.928 13 O -0.356 6.356 14 C 0.090 3.910 15 C -0.142 4.142 16 C -0.116 4.116 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.115 4.115 20 C 0.024 3.976 21 C -0.185 4.185 22 C -0.155 4.155 23 H 0.259 0.741 24 H -0.004 1.004 25 H 0.024 0.976 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.624 -16.362 1.869 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.148 4.148 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.530 4.530 8 H 0.086 0.914 9 C 0.070 3.930 10 N -0.224 5.224 11 C -0.069 4.069 12 C -0.005 4.005 13 O -0.275 6.275 14 C 0.032 3.968 15 C -0.180 4.180 16 C -0.154 4.154 17 C -0.159 4.159 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.085 4.085 21 C -0.223 4.223 22 C -0.192 4.192 23 H 0.068 0.932 24 H 0.014 0.986 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.850 -15.959 2.286 19.433 hybrid contribution -0.498 0.480 -0.703 0.986 sum 10.352 -15.479 1.583 18.689 Atomic orbital electron populations 1.69969 1.06024 1.26403 1.51920 1.24979 0.94809 0.99140 0.95888 0.86514 0.80180 0.83804 0.77382 1.19633 1.21259 1.21170 1.21269 0.93569 0.89627 1.48545 0.91394 1.19727 0.89818 0.87586 0.95898 1.61881 1.40505 1.02984 1.16994 1.22038 0.93575 0.90788 1.00507 1.22570 0.90682 0.96171 0.91118 1.88107 1.36218 1.45665 1.57507 1.21984 0.88213 0.89756 0.96860 1.22062 0.98024 0.97077 1.00806 1.21490 0.95096 0.97632 1.01158 1.21569 0.97254 0.97975 0.99096 1.21509 0.97951 0.96777 0.99138 1.21553 0.93094 0.97933 1.02714 1.22065 0.91367 1.04026 0.91044 1.23033 0.97098 1.00203 1.01960 1.23102 1.02494 0.92961 1.00630 0.93184 0.98593 0.95789 0.94756 0.90553 0.94603 0.93303 0.93011 0.91164 0.92164 0.92209 0.92058 0.92228 0.91828 0.92119 0.91675 0.91112 0.91150 0.91740 0.88755 0.90667 0.90369 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.49 -13.83 7.82 -34.44 -0.27 -14.10 16 8 H 0.07 1.91 5.78 -52.49 -0.30 1.60 16 9 C 0.19 5.14 4.77 -4.98 -0.02 5.12 16 10 N -0.50 -11.02 4.52 -228.08 -1.03 -12.05 16 11 C 0.06 1.11 5.32 -3.82 -0.02 1.09 16 12 C 0.07 1.13 5.72 37.16 0.21 1.34 16 13 O -0.36 -6.01 9.93 -35.23 -0.35 -6.36 16 14 C 0.09 1.18 2.61 -26.73 -0.07 1.11 16 15 C -0.14 -1.60 5.54 -26.73 -0.15 -1.75 16 16 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 17 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 18 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 19 C -0.12 -1.42 5.57 -26.74 -0.15 -1.57 16 20 C 0.02 0.49 4.18 -67.71 -0.28 0.20 16 21 C -0.19 -3.18 9.16 -26.69 -0.24 -3.43 16 22 C -0.15 -3.05 9.48 -26.69 -0.25 -3.31 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.00 -0.11 7.99 -51.93 -0.42 -0.52 16 25 H 0.02 0.68 7.73 -51.93 -0.40 0.28 16 26 H 0.03 0.61 8.12 -51.93 -0.42 0.18 16 27 H 0.08 1.47 7.83 -51.93 -0.41 1.07 16 28 H 0.04 0.49 7.87 -51.93 -0.41 0.08 16 29 H 0.05 0.75 6.23 -51.93 -0.32 0.43 16 30 H 0.05 0.65 7.79 -51.93 -0.40 0.24 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.12 2.63 5.44 -51.93 -0.28 2.35 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -30.08 348.80 -10.64 -40.71 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -8.41 Total: -0.47 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -1.82 Total: -17.60 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: -0.29 Total: -38.45 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.35 Total: -6.36 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.08 -10.64 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701398655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.907 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds