Wall clock time and date at job start Mon Mar 30 2020 07:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99822 * 2 1 4 4 H 1.48508 * 109.47022 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47137 * 299.99820 * 3 2 1 6 6 H 1.48493 * 109.47448 * 60.00234 * 3 2 1 7 7 C 1.37878 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99991 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47222 * 174.20075 * 9 7 2 11 11 C 1.46904 * 110.99848 * 159.87456 * 10 9 7 12 12 C 1.53003 * 109.46793 * 189.99985 * 11 10 9 13 13 O 1.42902 * 109.47107 * 64.99560 * 12 11 10 14 14 C 1.42905 * 113.99858 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.46863 * 270.00211 * 14 13 12 16 16 C 1.53004 * 109.47119 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.47144 * 59.99628 * 16 15 14 18 18 C 1.53002 * 109.47177 * 300.00428 * 17 16 15 19 19 C 1.52994 * 109.47070 * 59.99605 * 18 17 16 20 20 C 1.46901 * 110.99853 * 283.82214 * 10 9 7 21 21 C 1.53002 * 117.49454 * 138.01157 * 20 10 9 22 22 C 1.53001 * 117.49738 * 69.35199 * 20 10 9 23 23 H 0.96997 * 120.00121 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47235 * 54.19986 * 9 7 2 25 25 H 1.08996 * 109.46969 * 294.20114 * 9 7 2 26 26 H 1.08992 * 109.47745 * 69.99674 * 11 10 9 27 27 H 1.09006 * 109.47007 * 309.99293 * 11 10 9 28 28 H 1.09001 * 109.46864 * 184.99584 * 12 11 10 29 29 H 1.08995 * 109.47194 * 304.99965 * 12 11 10 30 30 H 1.08997 * 109.46870 * 29.99855 * 14 13 12 31 31 H 1.09007 * 109.47154 * 299.99537 * 15 14 13 32 32 H 1.09000 * 109.47495 * 60.00104 * 15 14 13 33 33 H 1.09006 * 109.46544 * 300.00226 * 16 15 14 34 34 H 1.08994 * 109.47818 * 180.02562 * 16 15 14 35 35 H 1.08997 * 109.46994 * 180.02562 * 17 16 15 36 36 H 1.08996 * 109.46716 * 60.00284 * 17 16 15 37 37 H 1.09007 * 109.47079 * 300.00312 * 18 17 16 38 38 H 1.09000 * 109.47257 * 179.97438 * 18 17 16 39 39 H 1.09005 * 109.47069 * 179.97438 * 19 18 17 40 40 H 1.09007 * 109.47117 * 60.00424 * 19 18 17 41 41 H 1.08994 * 115.55181 * 283.68261 * 20 10 9 42 42 H 1.08995 * 117.50397 * 0.02562 * 21 20 10 43 43 H 1.09003 * 117.49298 * 145.02529 * 21 20 10 44 44 H 1.09001 * 117.50109 * 214.97647 * 22 20 10 45 45 H 1.08999 * 117.49916 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.1997 -3.6122 -0.1388 11 6 1.6039 -4.8727 0.3240 12 6 2.6866 -5.9510 0.3996 13 8 3.6438 -5.5957 1.3995 14 6 4.7035 -6.5421 1.5521 15 6 4.3080 -7.5863 2.5981 16 6 5.4429 -8.5993 2.7620 17 6 6.7111 -7.8751 3.2183 18 6 7.1065 -6.8309 2.1722 19 6 5.9717 -5.8180 2.0084 20 6 2.6721 -3.7308 -1.5247 21 6 4.1602 -4.0125 -1.7420 22 6 3.5894 -2.6272 -2.0553 23 1 -0.4850 0.8400 0.0004 24 1 0.5492 -2.5135 -0.8333 25 1 0.7043 -2.6029 0.9377 26 1 0.8276 -5.1856 -0.3742 27 1 1.1667 -4.7268 1.3118 28 1 2.2301 -6.9068 0.6570 29 1 3.1844 -6.0345 -0.5664 30 1 4.8898 -7.0358 0.5983 31 1 4.1217 -7.0926 3.5519 32 1 3.4044 -8.1019 2.2732 33 1 5.6297 -9.0930 1.8082 34 1 5.1611 -9.3434 3.5068 35 1 7.5197 -8.5967 3.3346 36 1 6.5243 -7.3814 4.1719 37 1 7.2933 -7.3246 1.2185 38 1 8.0097 -6.3146 2.4975 39 1 6.2536 -5.0738 1.2635 40 1 5.7849 -5.3242 2.9621 41 1 1.9675 -4.1794 -2.2248 42 1 4.7886 -4.1102 -0.8568 43 1 4.4345 -4.6462 -2.5855 44 1 3.4884 -2.3500 -3.1046 45 1 3.8419 -1.8128 -1.3762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701398655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:06 Heat of formation + Delta-G solvation = -53.171839 kcal Electronic energy + Delta-G solvation = -21324.837866 eV Core-core repulsion = 18341.661577 eV Total energy + Delta-G solvation = -2983.176289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.18129 -39.20713 -37.18675 -35.33048 -34.37668 -31.67621 -31.29717 -29.85244 -27.77068 -24.16321 -23.73729 -23.26603 -23.06808 -22.88852 -20.99274 -20.62555 -18.56993 -17.72406 -16.77684 -16.74746 -16.30953 -16.11727 -15.73908 -15.27944 -15.16689 -14.61236 -14.57618 -14.14539 -13.92435 -13.71086 -13.43439 -13.17304 -13.09539 -13.03980 -12.65508 -12.58276 -12.35077 -12.13492 -12.01091 -11.87701 -11.66593 -11.40174 -11.33681 -11.18159 -11.15431 -10.98738 -10.67548 -10.51818 -10.15195 -8.93690 -8.14400 -6.21636 1.40424 1.41356 1.54607 2.42553 2.83359 3.06112 3.17393 3.29518 3.81968 3.87321 4.07852 4.17854 4.20646 4.23232 4.28023 4.35823 4.38652 4.44265 4.46527 4.60851 4.61821 4.66056 4.70634 4.76137 4.87178 4.91177 4.99577 5.01258 5.13113 5.14829 5.17190 5.23316 5.27201 5.30005 5.34528 5.39013 5.45651 5.51586 5.55617 5.78871 6.13181 6.46632 6.53916 6.73445 6.93786 7.45918 8.96464 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023864 B = 0.004378 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.015867 B = 6394.324367 C = 6585.563939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.001 4.001 3 Si 0.962 3.038 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.500 4.500 8 H 0.066 0.934 9 C 0.210 3.790 10 N -0.507 5.507 11 C 0.056 3.944 12 C 0.082 3.918 13 O -0.389 6.389 14 C 0.086 3.914 15 C -0.139 4.139 16 C -0.112 4.112 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.115 4.115 20 C 0.002 3.998 21 C -0.143 4.143 22 C -0.171 4.171 23 H 0.261 0.739 24 H -0.033 1.033 25 H -0.006 1.006 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.113 0.887 44 H 0.095 0.905 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.757 -17.923 1.197 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.539 4.539 8 H 0.084 0.916 9 C 0.084 3.916 10 N -0.232 5.232 11 C -0.073 4.073 12 C 0.005 3.995 13 O -0.309 6.309 14 C 0.029 3.971 15 C -0.177 4.177 16 C -0.149 4.149 17 C -0.158 4.158 18 C -0.148 4.148 19 C -0.153 4.153 20 C -0.107 4.107 21 C -0.180 4.180 22 C -0.208 4.208 23 H 0.070 0.930 24 H -0.016 1.016 25 H 0.012 0.988 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.132 0.868 44 H 0.113 0.887 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.002 -17.546 1.614 21.898 hybrid contribution -1.172 0.924 -0.478 1.567 sum 11.830 -16.622 1.136 20.434 Atomic orbital electron populations 1.70097 1.07665 1.27468 1.52890 1.25848 0.95632 1.02875 0.95401 0.85436 0.79117 0.79152 0.77564 1.18746 1.20445 1.20746 1.21524 0.93567 0.90599 1.48170 0.91583 1.19368 0.89788 0.89360 0.93100 1.61801 1.39270 1.03241 1.18887 1.22131 0.95147 0.90361 0.99624 1.22444 0.89876 0.95652 0.91484 1.88069 1.37350 1.47611 1.57858 1.22194 0.87341 0.89625 0.97985 1.22025 0.99198 0.97042 0.99402 1.21484 0.94160 0.97149 1.02152 1.21580 0.97786 0.98053 0.98413 1.21488 0.96924 0.96328 1.00061 1.21568 0.94053 0.98446 1.01249 1.22206 0.93185 1.05333 0.89947 1.23011 0.94153 0.98308 1.02568 1.23051 1.03671 0.93211 1.00880 0.92980 1.01566 0.98752 0.93805 0.92244 0.91926 0.92495 0.91847 0.92650 0.91924 0.91158 0.90842 0.90272 0.92476 0.91068 0.90884 0.92555 0.92870 0.90982 0.89478 0.86845 0.88655 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.99 13.29 21.45 0.28 -57.70 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 4 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 7 C -0.50 -28.98 7.82 25.60 0.20 -28.78 16 8 H 0.07 3.80 5.78 -2.91 -0.02 3.78 16 9 C 0.21 11.61 4.77 85.56 0.41 12.02 16 10 N -0.51 -22.88 4.52 -875.51 -3.95 -26.84 16 11 C 0.06 2.10 5.32 86.30 0.46 2.56 16 12 C 0.08 2.48 5.72 71.98 0.41 2.89 16 13 O -0.39 -12.94 9.93 -148.98 -1.48 -14.42 16 14 C 0.09 2.13 2.61 30.59 0.08 2.21 16 15 C -0.14 -2.91 5.54 30.59 0.17 -2.75 16 16 C -0.11 -1.72 5.92 30.60 0.18 -1.54 16 17 C -0.12 -1.81 5.92 30.60 0.18 -1.63 16 18 C -0.11 -1.87 5.92 30.59 0.18 -1.69 16 19 C -0.12 -2.75 5.57 30.59 0.17 -2.58 16 20 C 0.00 0.09 4.18 44.92 0.19 0.28 16 21 C -0.14 -4.58 9.16 30.62 0.28 -4.30 16 22 C -0.17 -6.62 9.48 30.62 0.29 -6.33 16 23 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 24 H -0.03 -2.01 7.99 -2.38 -0.02 -2.03 16 25 H -0.01 -0.33 7.73 -2.39 -0.02 -0.35 16 26 H 0.04 1.55 8.12 -2.39 -0.02 1.53 16 27 H 0.06 2.40 7.83 -2.38 -0.02 2.38 16 28 H 0.06 1.56 7.87 -2.39 -0.02 1.54 16 29 H 0.06 1.62 6.23 -2.39 -0.01 1.60 16 30 H 0.06 1.42 7.79 -2.39 -0.02 1.40 16 31 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.06 1.27 7.87 -2.39 -0.02 1.25 16 33 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 1.07 8.14 -2.38 -0.02 1.06 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 42 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 43 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 45 H 0.09 3.91 5.44 -2.39 -0.01 3.90 16 Total: -1.00 -66.65 348.80 1.46 -65.19 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.92 Total: 15.38 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 3.66 Total: -29.21 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -3.67 Total: -84.54 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -1.48 Total: -14.42 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -66.65 1.46 -65.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701398655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.015 kcal (2) G-P(sol) polarization free energy of solvation -66.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds