Wall clock time and date at job start Mon Mar 30 2020 07:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00313 * 2 1 4 4 H 1.48494 * 109.47352 * 240.00597 * 3 2 1 5 5 H 1.48506 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46918 * 119.99921 * 3 2 1 7 7 C 1.37875 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00051 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00002 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.49882 * 299.92103 * 9 7 2 11 11 C 1.53120 * 109.50158 * 59.99894 * 9 7 2 12 12 C 1.53123 * 109.15704 * 177.59766 * 11 9 7 13 13 C 1.53042 * 109.30951 * 302.32264 * 12 11 9 14 14 N 1.46928 * 109.47935 * 59.16236 * 13 12 11 15 15 C 1.46891 * 110.98631 * 174.17870 * 14 13 12 16 16 C 1.53003 * 109.47143 * 199.95109 * 15 14 13 17 17 O 1.42894 * 109.47267 * 64.58325 * 16 15 14 18 18 C 1.42901 * 114.00136 * 180.02562 * 17 16 15 19 19 C 1.54269 * 110.03565 * 267.91259 * 18 17 16 20 20 C 1.54964 * 104.15997 * 217.13573 * 19 18 17 21 21 C 1.54890 * 102.77874 * 37.88276 * 20 19 18 22 22 C 1.53872 * 110.03526 * 150.68992 * 18 17 16 23 23 C 1.46849 * 111.21674 * 298.28573 * 14 13 12 24 24 H 0.97001 * 120.00124 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.52702 * 57.68993 * 11 9 7 26 26 H 1.09004 * 109.57422 * 297.52810 * 11 9 7 27 27 H 1.08994 * 109.50367 * 62.28510 * 12 11 9 28 28 H 1.09004 * 109.50072 * 182.36244 * 12 11 9 29 29 H 1.08998 * 109.45616 * 179.21436 * 13 12 11 30 30 H 1.09001 * 109.45967 * 299.18287 * 13 12 11 31 31 H 1.08999 * 109.47259 * 319.94684 * 15 14 13 32 32 H 1.09002 * 109.47440 * 79.94826 * 15 14 13 33 33 H 1.08999 * 109.47357 * 184.58822 * 16 15 14 34 34 H 1.09009 * 109.46861 * 304.58412 * 16 15 14 35 35 H 1.09004 * 110.01571 * 29.30034 * 18 17 16 36 36 H 1.09002 * 110.48090 * 335.77935 * 19 18 17 37 37 H 1.08995 * 110.48912 * 98.42293 * 19 18 17 38 38 H 1.08999 * 110.71819 * 279.57261 * 20 19 18 39 39 H 1.08994 * 110.92115 * 156.29281 * 20 19 18 40 40 H 1.08991 * 110.48791 * 203.40523 * 21 20 19 41 41 H 1.09000 * 110.48692 * 80.75953 * 21 20 19 42 42 H 1.08996 * 110.03439 * 238.57333 * 22 18 17 43 43 H 1.09003 * 110.03057 * 0.02562 * 22 18 17 44 44 H 1.09001 * 109.45979 * 301.72291 * 23 14 13 45 45 H 1.09005 * 109.44613 * 181.75547 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6248 -2.5586 0.8885 11 6 0.3708 -2.5802 -1.2521 12 6 -0.3449 -3.9336 -1.2760 13 6 0.6946 -5.0564 -1.2450 14 7 1.5110 -4.9348 -0.0295 15 6 2.4284 -6.0742 0.1043 16 6 2.8868 -6.1918 1.5593 17 8 1.7648 -6.4997 2.3888 18 6 2.0856 -6.6314 3.7751 19 6 2.4001 -8.1047 4.1072 20 6 1.7992 -8.3114 5.5205 21 6 0.4932 -7.4807 5.4623 22 6 0.8739 -6.2345 4.6366 23 6 2.2447 -3.6629 -0.0071 24 1 -0.4850 0.8400 0.0004 25 1 0.9922 -2.4809 -2.1421 26 1 -0.3672 -1.7782 -1.2318 27 1 -0.9960 -4.0163 -0.4058 28 1 -0.9407 -4.0142 -2.1852 29 1 0.1872 -6.0211 -1.2478 30 1 1.3366 -4.9812 -2.1226 31 1 1.9157 -6.9899 -0.1902 32 1 3.2952 -5.9203 -0.5385 33 1 3.6294 -6.9853 1.6432 34 1 3.3268 -5.2472 1.8791 35 1 2.9410 -6.0023 4.0215 36 1 1.9204 -8.7686 3.3880 37 1 3.4773 -8.2709 4.1217 38 1 2.4707 -7.9222 6.2858 39 1 1.5799 -9.3639 5.7001 40 1 0.1795 -7.1924 6.4655 41 1 -0.2949 -8.0435 4.9621 42 1 1.1415 -5.4134 5.3016 43 1 0.0410 -5.9419 3.9972 44 1 2.8795 -3.5943 -0.8905 45 1 2.8633 -3.6165 0.8892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701398714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:23 Heat of formation + Delta-G solvation = -67.531960 kcal Electronic energy + Delta-G solvation = -21267.325624 eV Core-core repulsion = 18283.526633 eV Total energy + Delta-G solvation = -2983.798991 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.94416 -38.03140 -35.81091 -33.64915 -31.87502 -29.79784 -28.83673 -28.55616 -26.99984 -24.90794 -23.36362 -21.28698 -20.87356 -20.72499 -20.17234 -18.53027 -16.83562 -16.34965 -15.70262 -15.52096 -14.78294 -14.46478 -14.32884 -13.74847 -13.70910 -13.33339 -13.02954 -12.75420 -12.44826 -12.28879 -11.99554 -11.78026 -11.51620 -11.20546 -11.10417 -11.03604 -10.90375 -10.87594 -10.66535 -10.61308 -10.56258 -10.35139 -10.04468 -9.75174 -9.39786 -9.18474 -8.95903 -8.63679 -8.24924 -7.52231 -5.92514 -3.98746 3.34438 3.39176 3.41389 3.94166 4.42818 4.57142 4.58778 4.62668 4.90774 5.26077 5.36510 5.37223 5.45268 5.47092 5.53962 5.59368 5.64641 5.67841 5.76913 5.80803 5.83798 5.93479 5.98462 6.01494 6.07553 6.16181 6.21919 6.28824 6.31748 6.33846 6.47108 6.58372 6.80414 6.82766 7.05516 7.30150 7.46806 7.59173 7.77571 7.81606 7.92805 8.16181 8.24309 8.54070 9.05271 9.65074 11.13358 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.004542 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.997529 B = 6162.757663 C = 6780.059156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.051 0.949 9 C 0.056 3.944 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.065 3.935 14 N -0.529 5.529 15 C 0.056 3.944 16 C 0.070 3.930 17 O -0.359 6.359 18 C 0.083 3.917 19 C -0.147 4.147 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.124 4.124 23 C 0.067 3.933 24 H 0.260 0.740 25 H 0.028 0.972 26 H 0.090 0.910 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.020 0.980 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.016 0.984 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.375 -15.278 6.023 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.037 3.963 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.063 4.063 14 N -0.253 5.253 15 C -0.073 4.073 16 C -0.007 4.007 17 O -0.277 6.277 18 C 0.025 3.975 19 C -0.185 4.185 20 C -0.161 4.161 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.060 4.060 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.108 0.892 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.034 0.966 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.714 -15.169 6.343 16.665 hybrid contribution 1.422 0.969 -0.659 1.843 sum 4.136 -14.201 5.684 15.845 Atomic orbital electron populations 1.69886 1.05810 1.26338 1.50630 1.24924 0.94808 0.98849 0.95195 0.86710 0.79630 0.83429 0.78495 1.20424 1.21318 1.20362 1.21124 0.92716 0.90791 1.50748 0.93031 1.18637 0.92610 0.90171 0.94870 0.94745 1.21645 0.99996 0.94763 0.98393 1.21669 0.97226 0.96445 1.00135 1.22028 0.95487 0.98735 0.90005 1.61942 1.23748 1.01878 1.37777 1.22054 0.95718 0.95465 0.94016 1.22534 0.88378 0.98459 0.91305 1.88073 1.32615 1.91015 1.16044 1.22719 0.97277 0.94679 0.82814 1.22928 1.00366 0.97804 0.97391 1.22436 0.97116 0.99856 0.96679 1.22329 0.97465 0.96453 0.99738 1.22208 0.98638 0.97595 0.97716 1.22345 0.96415 0.88880 0.98326 0.93050 0.95310 0.89176 0.92038 0.93675 0.92460 0.96212 0.91030 0.94065 0.94129 0.93118 0.92375 0.90630 0.91998 0.91652 0.91699 0.91739 0.91499 0.91215 0.89857 0.96588 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 11.35 55.43 0.63 -25.05 16 2 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.35 8.56 -34.44 -0.29 -14.64 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.06 1.44 2.26 -91.69 -0.21 1.23 16 10 H 0.03 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.11 -2.67 5.02 -26.61 -0.13 -2.81 16 12 C -0.12 -2.39 6.09 -26.65 -0.16 -2.55 16 13 C 0.07 1.21 5.43 -3.79 -0.02 1.19 16 14 N -0.53 -10.26 4.53 -234.60 -1.06 -11.32 16 15 C 0.06 0.88 5.39 -3.83 -0.02 0.86 16 16 C 0.07 1.05 5.97 37.16 0.22 1.27 16 17 O -0.36 -5.77 9.84 -35.23 -0.35 -6.12 16 18 C 0.08 1.10 3.38 -25.61 -0.09 1.01 16 19 C -0.15 -1.58 6.56 -25.03 -0.16 -1.75 16 20 C -0.12 -1.15 6.91 -24.70 -0.17 -1.32 16 21 C -0.12 -1.25 6.83 -25.07 -0.17 -1.42 16 22 C -0.12 -1.57 6.61 -25.61 -0.17 -1.74 16 23 C 0.07 1.47 4.51 -3.84 -0.02 1.46 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.95 7.93 -51.93 -0.41 0.53 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 1.05 7.80 -51.93 -0.40 0.65 16 32 H 0.04 0.61 8.00 -51.93 -0.42 0.20 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.80 6.66 -51.92 -0.35 0.46 16 35 H 0.06 0.75 7.81 -51.93 -0.41 0.34 16 36 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.22 7.95 -51.93 -0.41 0.80 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 1.23 6.65 -51.93 -0.35 0.89 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -29.12 344.35 -10.62 -39.74 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -8.52 Total: -1.36 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -1.49 Total: -17.52 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.43 Total: -36.37 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.35 Total: -6.12 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.12 -10.62 -39.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701398714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.793 kcal (2) G-P(sol) polarization free energy of solvation -29.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds