Wall clock time and date at job start Mon Mar 30 2020 07:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00313 * 2 1 4 4 H 1.48494 * 109.47352 * 240.00597 * 3 2 1 5 5 H 1.48506 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46918 * 119.99921 * 3 2 1 7 7 C 1.37875 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00051 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00002 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.49882 * 299.92103 * 9 7 2 11 11 C 1.53120 * 109.50158 * 59.99894 * 9 7 2 12 12 C 1.53123 * 109.15704 * 177.59766 * 11 9 7 13 13 C 1.53042 * 109.30951 * 302.32264 * 12 11 9 14 14 N 1.46928 * 109.47935 * 59.16236 * 13 12 11 15 15 C 1.46891 * 110.98631 * 174.17870 * 14 13 12 16 16 C 1.53003 * 109.47143 * 199.95109 * 15 14 13 17 17 O 1.42894 * 109.47267 * 64.58325 * 16 15 14 18 18 C 1.42901 * 114.00136 * 180.02562 * 17 16 15 19 19 C 1.54269 * 110.03565 * 267.91259 * 18 17 16 20 20 C 1.54964 * 104.15997 * 217.13573 * 19 18 17 21 21 C 1.54890 * 102.77874 * 37.88276 * 20 19 18 22 22 C 1.53872 * 110.03526 * 150.68992 * 18 17 16 23 23 C 1.46849 * 111.21674 * 298.28573 * 14 13 12 24 24 H 0.97001 * 120.00124 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.52702 * 57.68993 * 11 9 7 26 26 H 1.09004 * 109.57422 * 297.52810 * 11 9 7 27 27 H 1.08994 * 109.50367 * 62.28510 * 12 11 9 28 28 H 1.09004 * 109.50072 * 182.36244 * 12 11 9 29 29 H 1.08998 * 109.45616 * 179.21436 * 13 12 11 30 30 H 1.09001 * 109.45967 * 299.18287 * 13 12 11 31 31 H 1.08999 * 109.47259 * 319.94684 * 15 14 13 32 32 H 1.09002 * 109.47440 * 79.94826 * 15 14 13 33 33 H 1.08999 * 109.47357 * 184.58822 * 16 15 14 34 34 H 1.09009 * 109.46861 * 304.58412 * 16 15 14 35 35 H 1.09004 * 110.01571 * 29.30034 * 18 17 16 36 36 H 1.09002 * 110.48090 * 335.77935 * 19 18 17 37 37 H 1.08995 * 110.48912 * 98.42293 * 19 18 17 38 38 H 1.08999 * 110.71819 * 279.57261 * 20 19 18 39 39 H 1.08994 * 110.92115 * 156.29281 * 20 19 18 40 40 H 1.08991 * 110.48791 * 203.40523 * 21 20 19 41 41 H 1.09000 * 110.48692 * 80.75953 * 21 20 19 42 42 H 1.08996 * 110.03439 * 238.57333 * 22 18 17 43 43 H 1.09003 * 110.03057 * 0.02562 * 22 18 17 44 44 H 1.09001 * 109.45979 * 301.72291 * 23 14 13 45 45 H 1.09005 * 109.44613 * 181.75547 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6248 -2.5586 0.8885 11 6 0.3708 -2.5802 -1.2521 12 6 -0.3449 -3.9336 -1.2760 13 6 0.6946 -5.0564 -1.2450 14 7 1.5110 -4.9348 -0.0295 15 6 2.4284 -6.0742 0.1043 16 6 2.8868 -6.1918 1.5593 17 8 1.7648 -6.4997 2.3888 18 6 2.0856 -6.6314 3.7751 19 6 2.4001 -8.1047 4.1072 20 6 1.7992 -8.3114 5.5205 21 6 0.4932 -7.4807 5.4623 22 6 0.8739 -6.2345 4.6366 23 6 2.2447 -3.6629 -0.0071 24 1 -0.4850 0.8400 0.0004 25 1 0.9922 -2.4809 -2.1421 26 1 -0.3672 -1.7782 -1.2318 27 1 -0.9960 -4.0163 -0.4058 28 1 -0.9407 -4.0142 -2.1852 29 1 0.1872 -6.0211 -1.2478 30 1 1.3366 -4.9812 -2.1226 31 1 1.9157 -6.9899 -0.1902 32 1 3.2952 -5.9203 -0.5385 33 1 3.6294 -6.9853 1.6432 34 1 3.3268 -5.2472 1.8791 35 1 2.9410 -6.0023 4.0215 36 1 1.9204 -8.7686 3.3880 37 1 3.4773 -8.2709 4.1217 38 1 2.4707 -7.9222 6.2858 39 1 1.5799 -9.3639 5.7001 40 1 0.1795 -7.1924 6.4655 41 1 -0.2949 -8.0435 4.9621 42 1 1.1415 -5.4134 5.3016 43 1 0.0410 -5.9419 3.9972 44 1 2.8795 -3.5943 -0.8905 45 1 2.8633 -3.6165 0.8892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701398714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:23 Heat of formation + Delta-G solvation = -84.083757 kcal Electronic energy + Delta-G solvation = -21268.043364 eV Core-core repulsion = 18283.526633 eV Total energy + Delta-G solvation = -2984.516730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.15524 -39.45976 -36.93933 -35.47219 -33.63063 -31.68359 -30.02733 -29.54704 -28.04485 -26.94981 -24.91782 -23.09076 -22.27072 -21.57099 -21.16762 -20.34361 -18.45376 -17.86188 -17.09323 -16.62502 -16.45929 -15.89837 -15.61880 -15.14503 -15.06220 -14.83769 -14.42785 -14.22257 -14.05531 -13.74754 -13.48690 -13.16585 -12.85753 -12.78444 -12.62927 -12.50720 -12.23699 -12.00727 -11.97245 -11.90342 -11.82000 -11.63478 -11.46026 -11.41276 -11.33676 -10.84781 -10.63476 -10.37831 -10.27696 -9.03981 -8.07179 -6.22061 1.40951 1.42633 1.50258 2.42824 2.85509 3.12315 3.19335 3.70517 3.73659 4.02606 4.13103 4.17888 4.28186 4.32388 4.39665 4.45645 4.54332 4.56927 4.61367 4.62464 4.64334 4.75305 4.81998 4.84076 4.90310 4.91119 5.00330 5.02506 5.07615 5.12698 5.19510 5.21456 5.26329 5.33609 5.40925 5.47589 5.52873 5.63266 5.97907 6.14382 6.22678 6.37622 6.47447 6.56990 6.90811 7.45773 8.97365 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.004542 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.997529 B = 6162.757663 C = 6780.059156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.051 0.949 9 C 0.054 3.946 10 H -0.010 1.010 11 C -0.103 4.103 12 C -0.111 4.111 13 C 0.068 3.932 14 N -0.545 5.545 15 C 0.056 3.944 16 C 0.071 3.929 17 O -0.385 6.385 18 C 0.074 3.926 19 C -0.140 4.140 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.129 4.129 23 C 0.084 3.916 24 H 0.260 0.740 25 H 0.024 0.976 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.029 0.971 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.016 0.984 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.642 -16.929 6.087 18.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.069 0.931 9 C 0.035 3.965 10 H 0.008 0.992 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.059 4.059 14 N -0.270 5.270 15 C -0.072 4.072 16 C -0.006 4.006 17 O -0.304 6.304 18 C 0.016 3.984 19 C -0.178 4.178 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.167 4.167 23 C -0.044 4.044 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.047 0.953 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.034 0.966 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.990 -16.841 6.410 18.456 hybrid contribution 0.990 1.486 -0.653 1.901 sum 4.980 -15.355 5.757 17.138 Atomic orbital electron populations 1.70043 1.07248 1.27114 1.51101 1.25736 0.95652 1.02365 0.94720 0.85666 0.78422 0.79051 0.78833 1.19542 1.20881 1.19681 1.21500 0.92942 0.92209 1.51012 0.93059 1.18554 0.92977 0.91417 0.93536 0.99152 1.21450 0.99074 0.96215 0.97351 1.21583 0.97601 0.95010 1.00655 1.22032 0.94996 0.98935 0.89944 1.61867 1.24671 1.01859 1.38585 1.22175 0.95720 0.94348 0.94949 1.22559 0.88644 0.98722 0.90646 1.88031 1.33701 1.91223 1.17460 1.22939 0.97237 0.96585 0.81596 1.22869 1.01333 0.95518 0.98096 1.22443 0.96348 1.00692 0.95985 1.22319 0.98139 0.95297 0.99863 1.22255 0.97676 0.99063 0.97714 1.21978 0.95238 0.89110 0.98038 0.93080 0.95765 0.92488 0.93639 0.91170 0.89641 0.95291 0.89290 0.92586 0.91021 0.94884 0.92524 0.91166 0.90563 0.90596 0.90003 0.90372 0.91748 0.91151 0.92684 0.96620 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.63 11.35 21.45 0.24 -54.39 16 2 C 0.01 0.80 5.30 84.65 0.45 1.25 16 3 Si 0.95 44.49 29.54 68.60 2.03 46.51 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.54 -30.76 8.56 25.60 0.22 -30.54 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.05 2.88 2.26 -11.49 -0.03 2.85 16 10 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 11 C -0.10 -5.13 5.02 30.68 0.15 -4.98 16 12 C -0.11 -4.49 6.09 30.65 0.19 -4.30 16 13 C 0.07 2.41 5.43 86.31 0.47 2.88 16 14 N -0.54 -20.72 4.53 -896.15 -4.06 -24.78 16 15 C 0.06 1.64 5.39 86.31 0.47 2.11 16 16 C 0.07 2.02 5.97 71.98 0.43 2.45 16 17 O -0.38 -12.19 9.84 -148.98 -1.47 -13.65 16 18 C 0.07 1.91 3.38 31.32 0.11 2.02 16 19 C -0.14 -2.73 6.56 31.70 0.21 -2.52 16 20 C -0.12 -1.89 6.91 31.91 0.22 -1.67 16 21 C -0.12 -2.28 6.83 31.67 0.22 -2.06 16 22 C -0.13 -3.31 6.61 31.32 0.21 -3.10 16 23 C 0.08 3.71 4.51 86.32 0.39 4.10 16 24 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 25 H 0.02 1.18 8.14 -2.39 -0.02 1.17 16 26 H 0.06 3.21 6.15 -2.39 -0.01 3.19 16 27 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.09 2.56 7.93 -2.39 -0.02 2.54 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 2.33 7.80 -2.39 -0.02 2.32 16 32 H 0.06 1.51 8.00 -2.39 -0.02 1.49 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.03 1.04 6.66 -2.38 -0.02 1.02 16 35 H 0.06 1.44 7.81 -2.38 -0.02 1.42 16 36 H 0.07 1.45 8.08 -2.39 -0.02 1.43 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.05 1.69 7.95 -2.39 -0.02 1.67 16 44 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.05 2.31 6.65 -2.38 -0.02 2.29 16 Total: -1.00 -64.54 344.35 1.36 -63.18 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.92 Total: 14.64 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 3.69 Total: -31.52 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -3.81 Total: -79.17 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -1.47 Total: -13.65 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -64.54 1.36 -63.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701398714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.904 kcal (2) G-P(sol) polarization free energy of solvation -64.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds