Wall clock time and date at job start Mon Mar 30 2020 07:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 119.99992 * 2 1 4 4 H 1.48502 * 109.47207 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47458 * 300.00143 * 3 2 1 6 6 H 1.48505 * 109.46880 * 60.00390 * 3 2 1 7 7 C 1.37877 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99943 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99871 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.51117 * 60.07754 * 9 7 2 11 11 C 1.53117 * 109.50203 * 299.99389 * 9 7 2 12 12 C 1.53120 * 109.16447 * 182.36845 * 11 9 7 13 13 C 1.53039 * 109.27847 * 57.65474 * 12 11 9 14 14 N 1.46845 * 109.52244 * 300.82536 * 13 12 11 15 15 C 1.46904 * 110.99822 * 185.83362 * 14 13 12 16 16 C 1.53006 * 109.46673 * 66.04689 * 15 14 13 17 17 O 1.42895 * 109.47036 * 65.00189 * 16 15 14 18 18 C 1.42901 * 113.99948 * 179.97438 * 17 16 15 19 19 C 1.54266 * 110.03456 * 267.16152 * 18 17 16 20 20 C 1.54888 * 104.19861 * 217.10553 * 19 18 17 21 21 C 1.54884 * 102.74896 * 37.94172 * 20 19 18 22 22 C 1.53880 * 110.03250 * 149.99518 * 18 17 16 23 23 C 1.46853 * 111.20078 * 61.74175 * 14 13 12 24 24 H 0.97000 * 120.00195 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.51971 * 62.46532 * 11 9 7 26 26 H 1.09001 * 109.57890 * 302.30779 * 11 9 7 27 27 H 1.09002 * 109.50373 * 297.71761 * 12 11 9 28 28 H 1.08997 * 109.53770 * 177.61864 * 12 11 9 29 29 H 1.08999 * 109.46333 * 180.80795 * 13 12 11 30 30 H 1.09004 * 109.45505 * 60.83776 * 13 12 11 31 31 H 1.08992 * 109.47335 * 306.04927 * 15 14 13 32 32 H 1.08997 * 109.46819 * 186.04562 * 15 14 13 33 33 H 1.09001 * 109.47002 * 184.99666 * 16 15 14 34 34 H 1.08993 * 109.46955 * 305.00103 * 16 15 14 35 35 H 1.09002 * 110.01831 * 28.60720 * 18 17 16 36 36 H 1.09001 * 110.48648 * 335.78936 * 19 18 17 37 37 H 1.08998 * 110.48139 * 98.42233 * 19 18 17 38 38 H 1.09003 * 110.75261 * 279.62784 * 20 19 18 39 39 H 1.09005 * 110.75148 * 156.26027 * 20 19 18 40 40 H 1.08995 * 110.48907 * 203.37984 * 21 20 19 41 41 H 1.09007 * 110.59791 * 80.79364 * 21 20 19 42 42 H 1.08994 * 110.03625 * 238.56740 * 22 18 17 43 43 H 1.08997 * 110.03291 * 359.95805 * 22 18 17 44 44 H 1.08999 * 109.45812 * 58.26887 * 23 14 13 45 45 H 1.08997 * 109.46251 * 178.24205 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 1 0.6254 -2.5575 -0.8924 11 6 0.3700 -2.5818 1.2479 12 6 -0.3465 -3.9349 1.2692 13 6 0.6929 -5.0576 1.2363 14 7 1.5096 -4.9349 0.0221 15 6 2.4265 -6.0747 -0.1130 16 6 1.6195 -7.3538 -0.3448 17 8 0.9378 -7.2664 -1.5976 18 6 0.1508 -8.4168 -1.9126 19 6 0.9797 -9.4103 -2.7528 20 6 -0.0387 -9.9965 -3.7618 21 6 -0.9174 -8.7701 -4.1121 22 6 -1.0554 -8.0097 -2.7769 23 6 2.2441 -3.6635 0.0024 24 1 -0.4850 0.8400 0.0004 25 1 -0.3675 -1.7795 1.2274 26 1 0.9900 -2.4840 2.1391 27 1 -0.9972 -4.0158 0.3984 28 1 -0.9428 -4.0174 2.1779 29 1 0.1856 -6.0224 1.2369 30 1 1.3345 -4.9843 2.1145 31 1 3.0157 -6.1770 0.7983 32 1 3.0925 -5.9068 -0.9594 33 1 2.2926 -8.2110 -0.3564 34 1 0.8914 -7.4743 0.4573 35 1 -0.1918 -8.8969 -0.9959 36 1 1.7809 -8.8901 -3.2779 37 1 1.3864 -10.1987 -2.1195 38 1 -0.6368 -10.7798 -3.2961 39 1 0.4700 -10.3734 -4.6491 40 1 -1.8952 -9.0913 -4.4710 41 1 -0.4248 -8.1457 -4.8576 42 1 -1.9833 -8.2930 -2.2802 43 1 -1.0410 -6.9346 -2.9555 44 1 2.8784 -3.5968 0.8863 45 1 2.8634 -3.6157 -0.8933 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701398716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:26 Heat of formation + Delta-G solvation = -83.204571 kcal Electronic energy + Delta-G solvation = -21159.678265 eV Core-core repulsion = 18175.199659 eV Total energy + Delta-G solvation = -2984.478606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.19361 -39.45279 -36.96348 -35.47318 -33.58667 -31.73769 -30.02751 -29.54230 -28.05119 -26.92031 -24.84154 -23.38776 -22.06644 -21.56780 -21.15710 -20.34464 -18.46104 -17.85972 -17.05102 -16.63945 -16.53416 -15.90459 -15.60626 -15.17313 -14.99982 -14.87277 -14.31502 -14.27913 -14.20823 -13.73329 -13.47128 -12.94633 -12.91208 -12.83974 -12.65931 -12.52445 -12.24908 -11.98556 -11.95500 -11.90732 -11.74836 -11.68595 -11.45465 -11.39995 -11.36298 -10.80561 -10.65437 -10.37918 -10.26227 -9.03916 -8.07379 -6.21993 1.40333 1.41591 1.53423 2.43085 2.85809 3.12827 3.19219 3.71183 3.74463 4.01803 4.11037 4.17239 4.22337 4.32581 4.41463 4.46519 4.52530 4.57517 4.61248 4.64080 4.64771 4.74032 4.83253 4.85700 4.89497 4.92867 5.01026 5.02855 5.07424 5.11702 5.18693 5.20832 5.27604 5.34436 5.40394 5.48281 5.52952 5.63864 5.97590 6.14310 6.22718 6.37358 6.47671 6.59621 6.91073 7.45864 8.97521 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027961 B = 0.003869 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.147430 B = 7234.504529 C = 7440.967770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.051 0.949 9 C 0.053 3.947 10 H -0.009 1.009 11 C -0.102 4.102 12 C -0.110 4.110 13 C 0.067 3.933 14 N -0.544 5.544 15 C 0.054 3.946 16 C 0.072 3.928 17 O -0.390 6.390 18 C 0.076 3.924 19 C -0.144 4.144 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.129 4.129 23 C 0.083 3.917 24 H 0.260 0.740 25 H 0.057 0.943 26 H 0.024 0.976 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.028 0.972 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.017 0.983 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 -20.844 -1.768 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.575 4.575 8 H 0.070 0.930 9 C 0.034 3.966 10 H 0.009 0.991 11 C -0.140 4.140 12 C -0.148 4.148 13 C -0.061 4.061 14 N -0.269 5.269 15 C -0.074 4.074 16 C -0.005 4.005 17 O -0.309 6.309 18 C 0.018 3.982 19 C -0.182 4.182 20 C -0.154 4.154 21 C -0.160 4.160 22 C -0.166 4.166 23 C -0.044 4.044 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.240 -20.576 -2.288 20.704 hybrid contribution 0.829 1.268 0.755 1.692 sum 0.589 -19.308 -1.533 19.378 Atomic orbital electron populations 1.70053 1.07232 1.26986 1.51280 1.25749 0.95686 1.02419 0.94755 0.85532 0.79048 0.79599 0.77619 1.19129 1.20656 1.20460 1.21560 0.92984 0.92197 1.50741 0.93047 1.18577 0.93003 0.91402 0.93632 0.99058 1.21442 0.99071 0.96224 0.97307 1.21568 0.97569 0.95009 1.00610 1.22051 0.95221 0.98918 0.89901 1.61861 1.24640 1.01794 1.38590 1.22182 0.94174 0.90152 1.00908 1.22598 0.95366 0.96481 0.86027 1.88102 1.64352 1.40616 1.37846 1.22955 0.91242 0.86263 0.97727 1.22882 0.98602 0.98259 0.98461 1.22427 0.96883 0.97168 0.98940 1.22334 1.00729 0.96781 0.96145 1.22264 0.97184 1.00593 0.96584 1.21954 0.95250 0.89047 0.98188 0.93085 0.92457 0.95719 0.93668 0.91178 0.89664 0.95369 0.92455 0.91018 0.91160 0.92830 0.91249 0.91939 0.90319 0.90087 0.90551 0.90241 0.92482 0.90222 0.92937 0.96489 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.77 11.35 21.45 0.24 -54.53 16 2 C 0.01 0.71 5.30 84.66 0.45 1.16 16 3 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.54 -30.87 8.57 25.60 0.22 -30.65 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.05 2.82 2.26 -11.49 -0.03 2.80 16 10 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 11 C -0.10 -5.10 5.02 30.67 0.15 -4.95 16 12 C -0.11 -4.43 6.09 30.65 0.19 -4.24 16 13 C 0.07 2.32 5.30 86.33 0.46 2.77 16 14 N -0.54 -20.76 4.60 -896.33 -4.13 -24.89 16 15 C 0.05 1.59 5.35 86.30 0.46 2.06 16 16 C 0.07 1.79 5.84 71.98 0.42 2.21 16 17 O -0.39 -11.55 9.84 -148.98 -1.47 -13.02 16 18 C 0.08 1.70 3.39 31.32 0.11 1.81 16 19 C -0.14 -2.63 6.56 31.67 0.21 -2.42 16 20 C -0.12 -1.75 6.91 31.88 0.22 -1.53 16 21 C -0.12 -2.23 6.83 31.67 0.22 -2.01 16 22 C -0.13 -2.90 6.61 31.32 0.21 -2.70 16 23 C 0.08 3.73 4.68 86.33 0.40 4.13 16 24 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 25 H 0.06 3.22 6.15 -2.39 -0.01 3.21 16 26 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.09 2.51 6.13 -2.39 -0.01 2.49 16 30 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.51 8.12 -2.39 -0.02 1.49 16 32 H 0.07 2.21 7.98 -2.39 -0.02 2.19 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 34 H 0.05 1.25 6.18 -2.39 -0.01 1.24 16 35 H 0.07 1.36 7.80 -2.39 -0.02 1.34 16 36 H 0.06 1.33 8.08 -2.39 -0.02 1.31 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 43 H 0.05 1.50 7.95 -2.39 -0.02 1.48 16 44 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.05 2.33 8.01 -2.39 -0.02 2.31 16 Total: -1.00 -65.25 343.68 1.28 -63.97 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.92 Total: 13.20 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 3.68 Total: -31.56 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -3.88 Total: -79.42 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -1.47 Total: -13.02 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.25 1.28 -63.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701398716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.237 kcal (2) G-P(sol) polarization free energy of solvation -65.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds