Wall clock time and date at job start Mon Mar 30 2020 07:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00116 * 2 1 4 4 H 1.48501 * 109.47304 * 270.00195 * 3 2 1 5 5 H 1.48504 * 109.46975 * 30.00363 * 3 2 1 6 6 H 1.48505 * 109.47333 * 150.00181 * 3 2 1 7 7 C 1.37878 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00117 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99990 * 179.97438 * 7 2 1 10 10 H 1.08993 * 110.76505 * 56.80468 * 9 7 2 11 11 C 1.55143 * 110.70650 * 293.59905 * 9 7 2 12 12 C 1.54906 * 101.65175 * 205.96403 * 11 9 7 13 13 N 1.47841 * 104.79638 * 37.07361 * 12 11 9 14 14 C 1.46898 * 110.99849 * 213.63490 * 13 12 11 15 15 C 1.53000 * 109.47357 * 290.84087 * 14 13 12 16 16 O 1.42903 * 109.46726 * 64.99864 * 15 14 13 17 17 C 1.42899 * 113.99629 * 180.02562 * 16 15 14 18 18 C 1.53008 * 109.47438 * 270.00038 * 17 16 15 19 19 C 1.52989 * 109.47313 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47728 * 60.00119 * 19 18 17 21 21 C 1.53008 * 109.46626 * 300.00301 * 20 19 18 22 22 C 1.52992 * 109.47622 * 59.99637 * 21 20 19 23 23 C 1.47444 * 108.56858 * 335.90296 * 13 12 11 24 24 H 0.96995 * 120.00342 * 359.97438 * 1 2 3 25 25 H 1.08999 * 110.98839 * 324.05456 * 11 9 7 26 26 H 1.08999 * 110.98779 * 87.87416 * 11 9 7 27 27 H 1.08997 * 110.37325 * 278.24291 * 12 11 9 28 28 H 1.09007 * 110.36959 * 155.90058 * 12 11 9 29 29 H 1.09002 * 109.47351 * 170.84390 * 14 13 12 30 30 H 1.09002 * 109.47308 * 50.84279 * 14 13 12 31 31 H 1.09002 * 109.47398 * 185.00108 * 15 14 13 32 32 H 1.09001 * 109.47194 * 305.00288 * 15 14 13 33 33 H 1.08999 * 109.47444 * 29.99805 * 17 16 15 34 34 H 1.08999 * 109.46614 * 300.00276 * 18 17 16 35 35 H 1.09000 * 109.46387 * 59.99775 * 18 17 16 36 36 H 1.08999 * 109.47260 * 299.99579 * 19 18 17 37 37 H 1.09002 * 109.47238 * 180.02562 * 19 18 17 38 38 H 1.08994 * 109.47538 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47191 * 59.99417 * 20 19 18 40 40 H 1.08999 * 109.46614 * 299.99470 * 21 20 19 41 41 H 1.09007 * 109.46747 * 179.97438 * 21 20 19 42 42 H 1.08993 * 109.47546 * 180.02562 * 22 21 20 43 43 H 1.08998 * 109.47118 * 59.99698 * 22 21 20 44 44 H 1.08992 * 109.88850 * 120.39928 * 23 13 12 45 45 H 1.09009 * 109.88677 * 241.42549 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 1 3.8983 -0.6362 0.8517 11 6 4.0596 -0.6127 -1.3311 12 6 5.4461 -1.2973 -1.4239 13 7 5.2302 -2.6608 -0.8948 14 6 6.4221 -3.1452 -0.1858 15 6 7.5484 -3.3925 -1.1914 16 8 7.9388 -2.1520 -1.7837 17 6 8.9904 -2.2719 -2.7438 18 6 10.3417 -2.1230 -2.0415 19 6 11.4675 -2.2508 -3.0695 20 6 11.3192 -1.1554 -4.1274 21 6 9.9679 -1.3043 -4.8296 22 6 8.8420 -1.1765 -3.8016 23 6 4.0572 -2.6376 -0.0017 24 1 -0.4850 0.8400 0.0004 25 1 3.4267 -0.8972 -2.1716 26 1 4.1623 0.4707 -1.2706 27 1 6.1742 -0.7640 -0.8128 28 1 5.7790 -1.3410 -2.4609 29 1 6.1849 -4.0757 0.3301 30 1 6.7413 -2.3981 0.5409 31 1 8.4024 -3.8352 -0.6788 32 1 7.1988 -4.0720 -1.9686 33 1 8.9356 -3.2496 -3.2225 34 1 10.3965 -1.1453 -1.5628 35 1 10.4472 -2.9032 -1.2877 36 1 11.4129 -3.2284 -3.5486 37 1 12.4301 -2.1452 -2.5692 38 1 12.1210 -1.2468 -4.8600 39 1 11.3738 -0.1779 -3.6483 40 1 9.9133 -2.2819 -5.3086 41 1 9.8620 -0.5237 -5.5829 42 1 7.8795 -1.2830 -4.3018 43 1 8.8968 -0.1990 -3.3225 44 1 3.2947 -3.3221 -0.3733 45 1 4.3535 -2.9250 1.0072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701401925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:45 Heat of formation + Delta-G solvation = -66.064009 kcal Electronic energy + Delta-G solvation = -21249.017841 eV Core-core repulsion = 18265.282506 eV Total energy + Delta-G solvation = -2983.735336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.37720 -38.20376 -36.38020 -33.19929 -31.57285 -30.98810 -29.75213 -28.37541 -27.69082 -24.08110 -22.84743 -22.51212 -21.90944 -20.29255 -19.79582 -19.38384 -16.92335 -16.79562 -15.91972 -15.59980 -14.85128 -14.71907 -14.37705 -14.22286 -13.77527 -13.40276 -13.34619 -12.95382 -12.72271 -12.44770 -12.41499 -12.16792 -11.99563 -11.52190 -11.34399 -11.24554 -11.17580 -10.97102 -10.72537 -10.65205 -10.51237 -10.43438 -10.16710 -9.99560 -9.71791 -9.41357 -9.30469 -8.98471 -8.49955 -7.63697 -6.03243 -4.01516 3.32488 3.40494 3.43062 3.67493 4.46289 4.49618 4.53010 4.57943 4.73370 4.98579 5.00003 5.14137 5.25418 5.27519 5.27879 5.31590 5.36307 5.43848 5.50670 5.55205 5.71782 5.77461 5.80869 5.83387 5.94529 5.95686 5.99993 6.04447 6.07359 6.15324 6.17639 6.21080 6.23514 6.54845 6.69720 6.87395 6.99455 7.14667 7.35480 7.41425 7.73714 7.78179 7.83332 8.56894 9.00403 9.59828 11.10030 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.004143 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.641629 B = 6756.295116 C = 7334.745421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.071 3.929 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.504 4.504 8 H 0.075 0.925 9 C -0.003 4.003 10 H 0.030 0.970 11 C -0.137 4.137 12 C 0.060 3.940 13 N -0.531 5.531 14 C 0.052 3.948 15 C 0.069 3.931 16 O -0.372 6.372 17 C 0.091 3.909 18 C -0.141 4.141 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.117 4.117 23 C 0.057 3.943 24 H 0.263 0.737 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.046 -4.651 -6.541 24.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.543 4.543 8 H 0.093 0.907 9 C -0.023 4.023 10 H 0.048 0.952 11 C -0.176 4.176 12 C -0.068 4.068 13 N -0.256 5.256 14 C -0.077 4.077 15 C -0.008 4.008 16 O -0.291 6.291 17 C 0.033 3.967 18 C -0.179 4.179 19 C -0.154 4.154 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.154 4.154 23 C -0.070 4.070 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 22.709 -4.719 -6.893 24.197 hybrid contribution 0.691 1.240 0.672 1.571 sum 23.400 -3.479 -6.221 24.462 Atomic orbital electron populations 1.69901 1.06251 1.26850 1.51138 1.24979 0.94635 0.98968 0.94478 0.86889 0.80022 0.83765 0.78436 1.20258 1.22071 1.19185 1.20968 0.88341 0.94476 1.50473 0.90706 1.20332 0.97155 0.91879 0.92925 0.95241 1.23137 0.95082 0.97940 1.01398 1.22925 0.96674 0.87636 0.99525 1.63644 1.02958 1.24497 1.34469 1.22301 0.90642 1.00371 0.94381 1.22574 0.95607 0.86476 0.96112 1.88044 1.53396 1.30478 1.57223 1.22029 0.86665 0.98595 0.89427 1.22048 0.94856 1.02700 0.98302 1.21487 0.98180 0.99063 0.96679 1.21573 0.97227 0.99209 0.97934 1.21507 0.94231 1.02027 0.97641 1.21581 0.99023 0.99151 0.95694 1.22821 0.91362 0.99606 0.93185 0.92733 0.90916 0.93370 0.94342 0.91291 0.90039 0.94453 0.93840 0.92669 0.92584 0.91236 0.92080 0.92077 0.91942 0.92065 0.91841 0.91971 0.91530 0.91062 0.91183 0.90625 0.94539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 2 C 0.07 2.07 5.46 -17.82 -0.10 1.98 16 3 Si 0.88 22.30 24.80 -169.99 -4.22 18.08 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.27 -6.55 6.46 56.52 0.36 -6.19 16 7 C -0.50 -14.40 9.05 -34.44 -0.31 -14.71 16 8 H 0.07 2.30 7.77 -52.49 -0.41 1.89 16 9 C 0.00 -0.08 2.32 -89.94 -0.21 -0.29 16 10 H 0.03 0.74 7.03 -51.93 -0.37 0.37 16 11 C -0.14 -3.09 5.44 -24.59 -0.13 -3.22 16 12 C 0.06 1.16 5.07 -2.30 -0.01 1.14 16 13 N -0.53 -9.93 5.16 -231.25 -1.19 -11.12 16 14 C 0.05 0.79 5.13 -3.82 -0.02 0.77 16 15 C 0.07 0.90 6.04 37.16 0.22 1.12 16 16 O -0.37 -5.19 7.33 -35.23 -0.26 -5.45 16 17 C 0.09 1.00 2.61 -26.72 -0.07 0.93 16 18 C -0.14 -1.35 5.54 -26.73 -0.15 -1.50 16 19 C -0.12 -0.90 5.92 -26.74 -0.16 -1.06 16 20 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 21 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 22 C -0.12 -1.23 5.57 -26.73 -0.15 -1.38 16 23 C 0.06 1.20 6.45 -2.83 -0.02 1.18 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.07 1.71 8.04 -51.93 -0.42 1.29 16 26 H 0.05 1.09 5.59 -51.93 -0.29 0.80 16 27 H 0.04 0.74 7.21 -51.93 -0.37 0.37 16 28 H 0.07 1.28 7.60 -51.93 -0.39 0.88 16 29 H 0.08 1.10 8.03 -51.93 -0.42 0.69 16 30 H 0.04 0.59 7.85 -51.93 -0.41 0.19 16 31 H 0.04 0.47 7.87 -51.93 -0.41 0.06 16 32 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 33 H 0.06 0.59 7.79 -51.93 -0.40 0.19 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.08 1.66 7.63 -51.93 -0.40 1.27 16 45 H 0.04 0.71 7.55 -51.92 -0.39 0.31 16 LS Contribution 335.89 15.07 5.06 5.06 Total: -1.00 -30.45 335.89 -9.73 -40.18 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -8.48 Total: -2.27 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -1.42 Total: -17.24 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.42 Total: -38.36 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.26 Total: -5.45 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.22 Total: 18.08 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.45 -9.73 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701401925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.882 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds