Wall clock time and date at job start Mon Mar 30 2020 07:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00116 * 2 1 4 4 H 1.48501 * 109.47304 * 270.00195 * 3 2 1 5 5 H 1.48504 * 109.46975 * 30.00363 * 3 2 1 6 6 H 1.48505 * 109.47333 * 150.00181 * 3 2 1 7 7 C 1.37878 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00117 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99990 * 179.97438 * 7 2 1 10 10 H 1.08993 * 110.76505 * 56.80468 * 9 7 2 11 11 C 1.55143 * 110.70650 * 293.59905 * 9 7 2 12 12 C 1.54906 * 101.65175 * 205.96403 * 11 9 7 13 13 N 1.47841 * 104.79638 * 37.07361 * 12 11 9 14 14 C 1.46898 * 110.99849 * 213.63490 * 13 12 11 15 15 C 1.53000 * 109.47357 * 290.84087 * 14 13 12 16 16 O 1.42903 * 109.46726 * 64.99864 * 15 14 13 17 17 C 1.42899 * 113.99629 * 180.02562 * 16 15 14 18 18 C 1.53008 * 109.47438 * 270.00038 * 17 16 15 19 19 C 1.52989 * 109.47313 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47728 * 60.00119 * 19 18 17 21 21 C 1.53008 * 109.46626 * 300.00301 * 20 19 18 22 22 C 1.52992 * 109.47622 * 59.99637 * 21 20 19 23 23 C 1.47444 * 108.56858 * 335.90296 * 13 12 11 24 24 H 0.96995 * 120.00342 * 359.97438 * 1 2 3 25 25 H 1.08999 * 110.98839 * 324.05456 * 11 9 7 26 26 H 1.08999 * 110.98779 * 87.87416 * 11 9 7 27 27 H 1.08997 * 110.37325 * 278.24291 * 12 11 9 28 28 H 1.09007 * 110.36959 * 155.90058 * 12 11 9 29 29 H 1.09002 * 109.47351 * 170.84390 * 14 13 12 30 30 H 1.09002 * 109.47308 * 50.84279 * 14 13 12 31 31 H 1.09002 * 109.47398 * 185.00108 * 15 14 13 32 32 H 1.09001 * 109.47194 * 305.00288 * 15 14 13 33 33 H 1.08999 * 109.47444 * 29.99805 * 17 16 15 34 34 H 1.08999 * 109.46614 * 300.00276 * 18 17 16 35 35 H 1.09000 * 109.46387 * 59.99775 * 18 17 16 36 36 H 1.08999 * 109.47260 * 299.99579 * 19 18 17 37 37 H 1.09002 * 109.47238 * 180.02562 * 19 18 17 38 38 H 1.08994 * 109.47538 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47191 * 59.99417 * 20 19 18 40 40 H 1.08999 * 109.46614 * 299.99470 * 21 20 19 41 41 H 1.09007 * 109.46747 * 179.97438 * 21 20 19 42 42 H 1.08993 * 109.47546 * 180.02562 * 22 21 20 43 43 H 1.08998 * 109.47118 * 59.99698 * 22 21 20 44 44 H 1.08992 * 109.88850 * 120.39928 * 23 13 12 45 45 H 1.09009 * 109.88677 * 241.42549 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 1 3.8983 -0.6362 0.8517 11 6 4.0596 -0.6127 -1.3311 12 6 5.4461 -1.2973 -1.4239 13 7 5.2302 -2.6608 -0.8948 14 6 6.4221 -3.1452 -0.1858 15 6 7.5484 -3.3925 -1.1914 16 8 7.9388 -2.1520 -1.7837 17 6 8.9904 -2.2719 -2.7438 18 6 10.3417 -2.1230 -2.0415 19 6 11.4675 -2.2508 -3.0695 20 6 11.3192 -1.1554 -4.1274 21 6 9.9679 -1.3043 -4.8296 22 6 8.8420 -1.1765 -3.8016 23 6 4.0572 -2.6376 -0.0017 24 1 -0.4850 0.8400 0.0004 25 1 3.4267 -0.8972 -2.1716 26 1 4.1623 0.4707 -1.2706 27 1 6.1742 -0.7640 -0.8128 28 1 5.7790 -1.3410 -2.4609 29 1 6.1849 -4.0757 0.3301 30 1 6.7413 -2.3981 0.5409 31 1 8.4024 -3.8352 -0.6788 32 1 7.1988 -4.0720 -1.9686 33 1 8.9356 -3.2496 -3.2225 34 1 10.3965 -1.1453 -1.5628 35 1 10.4472 -2.9032 -1.2877 36 1 11.4129 -3.2284 -3.5486 37 1 12.4301 -2.1452 -2.5692 38 1 12.1210 -1.2468 -4.8600 39 1 11.3738 -0.1779 -3.6483 40 1 9.9133 -2.2819 -5.3086 41 1 9.8620 -0.5237 -5.5829 42 1 7.8795 -1.2830 -4.3018 43 1 8.8968 -0.1990 -3.3225 44 1 3.2947 -3.3221 -0.3733 45 1 4.3535 -2.9250 1.0072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701401925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:45 Heat of formation + Delta-G solvation = -85.042061 kcal Electronic energy + Delta-G solvation = -21249.840791 eV Core-core repulsion = 18265.282506 eV Total energy + Delta-G solvation = -2984.558286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.37417 -39.58171 -37.34111 -35.10327 -33.29975 -31.68852 -30.72689 -30.13136 -28.99829 -26.02103 -23.73121 -23.39376 -22.90653 -21.75396 -21.21810 -20.63648 -19.01561 -17.77046 -17.22086 -16.65233 -16.34630 -16.11684 -15.39477 -15.22004 -15.03196 -14.79051 -14.53212 -14.37177 -14.09198 -13.84455 -13.60869 -13.34324 -13.11245 -13.03842 -12.73292 -12.56889 -12.36758 -12.07467 -12.02430 -11.91726 -11.65188 -11.57916 -11.40882 -11.35686 -11.27870 -11.16561 -11.10046 -10.72471 -10.21150 -9.15338 -8.30702 -6.33732 1.31094 1.32927 1.43505 2.32386 2.77714 3.03757 3.14878 3.79393 3.84008 3.99184 4.07130 4.07336 4.22793 4.26174 4.32239 4.39491 4.41570 4.43839 4.52758 4.57994 4.59313 4.63005 4.71784 4.75465 4.81021 4.89183 4.96224 5.00846 5.06450 5.11510 5.14634 5.24256 5.26519 5.30181 5.32672 5.34128 5.42008 5.49662 5.52703 5.71547 6.12247 6.26377 6.33981 6.45949 6.71683 7.31128 8.86157 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.004143 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.641629 B = 6756.295116 C = 7334.745421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.014 3.986 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.252 1.252 7 C -0.510 4.510 8 H 0.036 0.964 9 C -0.008 4.008 10 H 0.027 0.973 11 C -0.136 4.136 12 C 0.077 3.923 13 N -0.535 5.535 14 C 0.049 3.951 15 C 0.074 3.926 16 O -0.396 6.396 17 C 0.088 3.912 18 C -0.137 4.137 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.117 4.117 23 C 0.066 3.934 24 H 0.266 0.734 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.223 -4.578 -6.953 27.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.183 4.183 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.176 1.176 7 C -0.548 4.548 8 H 0.054 0.946 9 C -0.028 4.028 10 H 0.045 0.955 11 C -0.175 4.175 12 C -0.051 4.051 13 N -0.259 5.259 14 C -0.079 4.079 15 C -0.003 4.003 16 O -0.316 6.316 17 C 0.030 3.970 18 C -0.175 4.175 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.150 4.150 22 C -0.155 4.155 23 C -0.062 4.062 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 25.914 -4.663 -7.310 27.326 hybrid contribution -0.337 1.128 0.802 1.424 sum 25.577 -3.535 -6.508 26.628 Atomic orbital electron populations 1.70040 1.08099 1.28003 1.52866 1.25825 0.95382 1.02847 0.94210 0.85885 0.79180 0.79038 0.79163 1.19034 1.21719 1.17559 1.21230 0.90811 0.93059 1.49734 0.94565 1.20292 0.94306 0.94420 0.93781 0.95473 1.23036 0.96720 0.98242 0.99481 1.22768 0.94453 0.87549 1.00287 1.63611 1.03730 1.24050 1.34539 1.22461 0.89737 1.00862 0.94887 1.22531 0.95676 0.86304 0.95791 1.87995 1.54536 1.31102 1.57993 1.22182 0.86663 0.98979 0.89156 1.22003 0.94626 1.02147 0.98715 1.21485 0.97866 0.99464 0.96297 1.21578 0.97160 0.98945 0.98176 1.21495 0.93772 1.02626 0.97151 1.21590 0.99362 0.98482 0.96047 1.22608 0.92054 0.97009 0.94527 0.92514 0.92587 0.93228 0.93902 0.90323 0.88240 0.94790 0.91190 0.92664 0.91924 0.92390 0.91717 0.91344 0.90917 0.90585 0.92327 0.91319 0.90979 0.92370 0.92336 0.92439 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 2 C 0.01 0.86 5.46 84.66 0.46 1.32 16 3 Si 0.94 45.90 24.80 68.60 1.70 47.60 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.25 -11.54 6.46 99.48 0.64 -10.90 16 7 C -0.51 -29.89 9.05 25.60 0.23 -29.66 16 8 H 0.04 2.33 7.77 -2.91 -0.02 2.31 16 9 C -0.01 -0.40 2.32 -10.36 -0.02 -0.42 16 10 H 0.03 1.33 7.03 -2.39 -0.02 1.31 16 11 C -0.14 -6.02 5.44 31.98 0.17 -5.84 16 12 C 0.08 2.84 5.07 86.77 0.44 3.28 16 13 N -0.53 -19.11 5.16 -885.53 -4.57 -23.68 16 14 C 0.05 1.35 5.13 86.30 0.44 1.79 16 15 C 0.07 1.70 6.04 71.98 0.43 2.14 16 16 O -0.40 -10.19 7.33 -148.98 -1.09 -11.28 16 17 C 0.09 1.75 2.61 30.60 0.08 1.83 16 18 C -0.14 -2.30 5.54 30.59 0.17 -2.13 16 19 C -0.11 -1.44 5.92 30.59 0.18 -1.26 16 20 C -0.12 -1.53 5.92 30.60 0.18 -1.35 16 21 C -0.11 -1.63 5.92 30.59 0.18 -1.45 16 22 C -0.12 -2.30 5.57 30.59 0.17 -2.13 16 23 C 0.07 2.71 6.45 86.65 0.56 3.27 16 24 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 25 H 0.06 2.63 8.04 -2.39 -0.02 2.61 16 26 H 0.05 2.15 5.59 -2.39 -0.01 2.13 16 27 H 0.04 1.56 7.21 -2.39 -0.02 1.54 16 28 H 0.08 2.77 7.60 -2.38 -0.02 2.76 16 29 H 0.10 2.40 8.03 -2.39 -0.02 2.38 16 30 H 0.03 0.98 7.85 -2.39 -0.02 0.97 16 31 H 0.07 1.27 7.87 -2.39 -0.02 1.25 16 32 H 0.06 1.28 8.08 -2.39 -0.02 1.26 16 33 H 0.06 1.16 7.79 -2.39 -0.02 1.15 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.03 7.87 -2.39 -0.02 1.01 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.06 2.57 7.63 -2.39 -0.02 2.55 16 45 H 0.05 1.99 7.55 -2.38 -0.02 1.97 16 Total: -1.00 -66.09 335.89 0.88 -65.22 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.85 Total: 12.95 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 3.68 Total: -30.61 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -4.27 Total: -83.88 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -1.09 Total: -11.28 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.70 Total: 47.60 kcal Total: -66.09 0.88 -65.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701401925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.825 kcal (2) G-P(sol) polarization free energy of solvation -66.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds