Wall clock time and date at job start Mon Mar 30 2020 07:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 119.99612 * 2 1 4 4 H 1.48507 * 109.47131 * 269.99354 * 3 2 1 5 5 H 1.48497 * 109.47701 * 29.99607 * 3 2 1 6 6 H 1.48506 * 109.47244 * 149.99897 * 3 2 1 7 7 C 1.37877 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99845 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99901 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.27273 * 302.08418 * 9 7 2 11 11 C 1.54601 * 110.39510 * 64.22742 * 9 7 2 12 12 C 1.54941 * 102.91951 * 140.91738 * 11 9 7 13 13 N 1.48536 * 103.22635 * 322.58537 * 12 11 9 14 14 C 1.46898 * 110.99841 * 159.72167 * 13 12 11 15 15 C 1.53000 * 109.47357 * 52.60446 * 14 13 12 16 16 O 1.42903 * 109.46726 * 64.99864 * 15 14 13 17 17 C 1.42899 * 113.99629 * 180.02562 * 16 15 14 18 18 C 1.53008 * 109.47438 * 270.00038 * 17 16 15 19 19 C 1.52989 * 109.47313 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47728 * 60.00119 * 19 18 17 21 21 C 1.53008 * 109.46626 * 300.00301 * 20 19 18 22 22 C 1.52992 * 109.47622 * 59.99637 * 21 20 19 23 23 C 1.47900 * 105.82211 * 39.21152 * 13 12 11 24 24 H 0.96995 * 120.00304 * 0.02562 * 1 2 3 25 25 H 1.08988 * 110.72710 * 259.27250 * 11 9 7 26 26 H 1.08998 * 110.72174 * 22.38323 * 11 9 7 27 27 H 1.09000 * 110.66511 * 204.15651 * 12 11 9 28 28 H 1.08993 * 110.66955 * 81.02041 * 12 11 9 29 29 H 1.09002 * 109.47351 * 292.60749 * 14 13 12 30 30 H 1.09002 * 109.47308 * 172.60638 * 14 13 12 31 31 H 1.09002 * 109.47398 * 185.00108 * 15 14 13 32 32 H 1.09001 * 109.47194 * 305.00288 * 15 14 13 33 33 H 1.08999 * 109.47444 * 29.99805 * 17 16 15 34 34 H 1.08999 * 109.46614 * 300.00276 * 18 17 16 35 35 H 1.09000 * 109.46387 * 59.99775 * 18 17 16 36 36 H 1.08999 * 109.47260 * 299.99579 * 19 18 17 37 37 H 1.09002 * 109.47238 * 180.02562 * 19 18 17 38 38 H 1.08994 * 109.47538 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47191 * 59.99417 * 20 19 18 40 40 H 1.08999 * 109.46614 * 299.99470 * 21 20 19 41 41 H 1.09007 * 109.46747 * 179.97438 * 21 20 19 42 42 H 1.08993 * 109.47546 * 180.02562 * 22 21 20 43 43 H 1.08998 * 109.47118 * 59.99698 * 22 21 20 44 44 H 1.08997 * 109.91977 * 94.01787 * 23 13 12 45 45 H 1.09002 * 109.91985 * 215.12214 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.5916 -2.5545 0.8666 11 6 0.4366 -2.6510 -1.3047 12 6 0.6011 -4.1541 -1.6428 13 7 2.0048 -4.4392 -1.2497 14 6 2.2111 -5.8786 -1.0411 15 6 1.7279 -6.6469 -2.2728 16 8 2.5432 -6.3071 -3.3962 17 6 2.1738 -6.9735 -4.6051 18 6 2.9385 -8.2943 -4.7136 19 6 2.5435 -9.0074 -6.0082 20 6 2.8878 -8.1191 -7.2054 21 6 2.1231 -6.7983 -7.0969 22 6 2.5180 -6.0851 -5.8023 23 6 2.2347 -3.6841 0.0011 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6119 -2.4062 -1.1357 26 1 0.8544 -2.0271 -2.0948 27 1 0.4578 -4.3263 -2.7095 28 1 -0.0924 -4.7581 -1.0578 29 1 1.6477 -6.2034 -0.1663 30 1 3.2717 -6.0747 -0.8835 31 1 1.7981 -7.7181 -2.0836 32 1 0.6915 -6.3822 -2.4827 33 1 1.1024 -7.1736 -4.5970 34 1 4.0099 -8.0941 -4.7218 35 1 2.6935 -8.9269 -3.8605 36 1 1.4721 -9.2076 -6.0005 37 1 3.0879 -9.9486 -6.0853 38 1 2.6059 -8.6270 -8.1277 39 1 3.9592 -7.9190 -7.2132 40 1 1.0517 -6.9985 -7.0892 41 1 2.3687 -6.1652 -7.9496 42 1 1.9730 -5.1444 -5.7248 43 1 3.5895 -5.8850 -5.8101 44 1 2.0437 -4.3247 0.8620 45 1 3.2611 -3.3185 0.0309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701401927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:48 Heat of formation + Delta-G solvation = -68.710037 kcal Electronic energy + Delta-G solvation = -21007.439087 eV Core-core repulsion = 18023.589011 eV Total energy + Delta-G solvation = -2983.850076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.26571 -38.06008 -36.26867 -33.25184 -31.27938 -30.90513 -29.56080 -28.16820 -27.32523 -24.10903 -22.80745 -22.39073 -22.12395 -19.98521 -19.66895 -19.30052 -16.80487 -16.40508 -15.82142 -15.32869 -14.78474 -14.56119 -14.35385 -14.25939 -14.02339 -13.38242 -13.14323 -12.93837 -12.58646 -12.36969 -12.26871 -11.93597 -11.59212 -11.26278 -11.24169 -11.08473 -10.90164 -10.81077 -10.68365 -10.59742 -10.47009 -10.37896 -10.28255 -10.10947 -9.60770 -9.28165 -9.17100 -8.71822 -8.33521 -7.57417 -5.95186 -3.96375 3.36362 3.42430 3.46248 3.75467 4.50256 4.56872 4.60111 4.72018 4.79998 5.04218 5.06900 5.20461 5.32090 5.34876 5.35727 5.39196 5.42316 5.47124 5.54991 5.62322 5.78932 5.84554 5.87655 5.93892 6.00967 6.02603 6.04627 6.08695 6.19182 6.25227 6.28356 6.33640 6.36520 6.65858 6.95064 7.20302 7.28430 7.45542 7.54728 7.72088 7.90838 7.97822 8.10319 8.51688 9.05065 9.66599 11.15038 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029023 B = 0.003704 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.504952 B = 7557.746541 C = 8018.668195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.505 4.505 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.091 4.091 12 C 0.030 3.970 13 N -0.504 5.504 14 C 0.047 3.953 15 C 0.066 3.934 16 O -0.361 6.361 17 C 0.089 3.911 18 C -0.141 4.141 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.116 4.116 23 C 0.043 3.957 24 H 0.259 0.741 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.025 0.975 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.018 0.982 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.347 -17.447 -10.893 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.129 4.129 12 C -0.097 4.097 13 N -0.229 5.229 14 C -0.081 4.081 15 C -0.011 4.011 16 O -0.279 6.279 17 C 0.031 3.969 18 C -0.179 4.179 19 C -0.154 4.154 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.154 4.154 23 C -0.084 4.084 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.036 0.964 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.724 -17.042 -11.271 20.613 hybrid contribution -0.379 0.369 0.683 0.864 sum 2.344 -16.673 -10.589 19.890 Atomic orbital electron populations 1.69971 1.05884 1.26367 1.50939 1.24983 0.94851 0.99042 0.95268 0.86612 0.79846 0.83561 0.78077 1.20711 1.21419 1.19945 1.21193 0.92764 0.90196 1.50167 0.92469 1.19486 0.92473 0.91968 0.93942 0.95328 1.22385 1.00058 0.90657 0.99847 1.23330 0.88364 0.99197 0.98858 1.64790 1.23001 1.04625 1.30476 1.22289 1.01556 0.90233 0.94052 1.22623 0.94357 0.96971 0.87109 1.88082 1.56088 1.67121 1.16633 1.22042 0.97429 0.91676 0.85772 1.22050 1.01596 0.96780 0.97458 1.21489 1.01217 0.98244 0.94471 1.21572 1.00603 0.95946 0.97787 1.21514 1.00150 0.96378 0.97398 1.21562 1.02713 0.98666 0.92427 1.23123 1.01879 0.95515 0.87861 0.93182 0.92482 0.92011 0.91922 0.95714 0.94115 0.90536 0.93965 0.93283 0.92816 0.91149 0.92148 0.92123 0.91965 0.92113 0.91821 0.92021 0.91528 0.90972 0.91112 0.96413 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 12.63 55.43 0.70 -25.35 16 2 C 0.06 1.69 5.34 -17.82 -0.10 1.59 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.50 -14.21 8.38 -34.44 -0.29 -14.50 16 8 H 0.06 1.60 7.35 -52.49 -0.39 1.22 16 9 C 0.04 1.03 2.87 -90.41 -0.26 0.77 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 11 C -0.09 -2.19 5.75 -24.87 -0.14 -2.34 16 12 C 0.03 0.60 5.09 -1.89 -0.01 0.59 16 13 N -0.50 -10.20 5.34 -230.45 -1.23 -11.43 16 14 C 0.05 0.77 5.41 -3.82 -0.02 0.75 16 15 C 0.07 0.95 5.57 37.16 0.21 1.15 16 16 O -0.36 -5.59 9.93 -35.23 -0.35 -5.94 16 17 C 0.09 1.08 2.61 -26.72 -0.07 1.01 16 18 C -0.14 -1.44 5.54 -26.73 -0.15 -1.59 16 19 C -0.12 -0.97 5.92 -26.74 -0.16 -1.13 16 20 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 21 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 22 C -0.12 -1.34 5.57 -26.73 -0.15 -1.49 16 23 C 0.04 0.96 6.34 -2.75 -0.02 0.94 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.06 1.42 8.12 -51.94 -0.42 1.00 16 26 H 0.06 1.62 7.86 -51.93 -0.41 1.21 16 27 H 0.06 1.19 7.56 -51.93 -0.39 0.80 16 28 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 29 H 0.04 0.63 7.81 -51.93 -0.41 0.22 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.04 0.50 7.87 -51.93 -0.41 0.10 16 32 H 0.05 0.70 6.46 -51.93 -0.34 0.37 16 33 H 0.05 0.63 7.79 -51.93 -0.40 0.22 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.60 7.87 -51.93 -0.41 0.19 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 45 H 0.07 1.61 7.40 -51.93 -0.38 1.23 16 LS Contribution 344.54 15.07 5.19 5.19 Total: -1.00 -29.54 344.54 -10.73 -40.27 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -8.55 Total: -2.92 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -1.47 Total: -16.57 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: -0.53 Total: -36.78 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.35 Total: -5.94 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.54 -10.73 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701401927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.441 kcal (2) G-P(sol) polarization free energy of solvation -29.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds