Wall clock time and date at job start Mon Mar 30 2020 07:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 119.99612 * 2 1 4 4 H 1.48507 * 109.47131 * 269.99354 * 3 2 1 5 5 H 1.48497 * 109.47701 * 29.99607 * 3 2 1 6 6 H 1.48506 * 109.47244 * 149.99897 * 3 2 1 7 7 C 1.37877 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99845 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99901 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.27273 * 302.08418 * 9 7 2 11 11 C 1.54601 * 110.39510 * 64.22742 * 9 7 2 12 12 C 1.54941 * 102.91951 * 140.91738 * 11 9 7 13 13 N 1.48536 * 103.22635 * 322.58537 * 12 11 9 14 14 C 1.46898 * 110.99841 * 159.72167 * 13 12 11 15 15 C 1.53000 * 109.47357 * 52.60446 * 14 13 12 16 16 O 1.42903 * 109.46726 * 64.99864 * 15 14 13 17 17 C 1.42899 * 113.99629 * 180.02562 * 16 15 14 18 18 C 1.53008 * 109.47438 * 270.00038 * 17 16 15 19 19 C 1.52989 * 109.47313 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47728 * 60.00119 * 19 18 17 21 21 C 1.53008 * 109.46626 * 300.00301 * 20 19 18 22 22 C 1.52992 * 109.47622 * 59.99637 * 21 20 19 23 23 C 1.47900 * 105.82211 * 39.21152 * 13 12 11 24 24 H 0.96995 * 120.00304 * 0.02562 * 1 2 3 25 25 H 1.08988 * 110.72710 * 259.27250 * 11 9 7 26 26 H 1.08998 * 110.72174 * 22.38323 * 11 9 7 27 27 H 1.09000 * 110.66511 * 204.15651 * 12 11 9 28 28 H 1.08993 * 110.66955 * 81.02041 * 12 11 9 29 29 H 1.09002 * 109.47351 * 292.60749 * 14 13 12 30 30 H 1.09002 * 109.47308 * 172.60638 * 14 13 12 31 31 H 1.09002 * 109.47398 * 185.00108 * 15 14 13 32 32 H 1.09001 * 109.47194 * 305.00288 * 15 14 13 33 33 H 1.08999 * 109.47444 * 29.99805 * 17 16 15 34 34 H 1.08999 * 109.46614 * 300.00276 * 18 17 16 35 35 H 1.09000 * 109.46387 * 59.99775 * 18 17 16 36 36 H 1.08999 * 109.47260 * 299.99579 * 19 18 17 37 37 H 1.09002 * 109.47238 * 180.02562 * 19 18 17 38 38 H 1.08994 * 109.47538 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47191 * 59.99417 * 20 19 18 40 40 H 1.08999 * 109.46614 * 299.99470 * 21 20 19 41 41 H 1.09007 * 109.46747 * 179.97438 * 21 20 19 42 42 H 1.08993 * 109.47546 * 180.02562 * 22 21 20 43 43 H 1.08998 * 109.47118 * 59.99698 * 22 21 20 44 44 H 1.08997 * 109.91977 * 94.01787 * 23 13 12 45 45 H 1.09002 * 109.91985 * 215.12214 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.5916 -2.5545 0.8666 11 6 0.4366 -2.6510 -1.3047 12 6 0.6011 -4.1541 -1.6428 13 7 2.0048 -4.4392 -1.2497 14 6 2.2111 -5.8786 -1.0411 15 6 1.7279 -6.6469 -2.2728 16 8 2.5432 -6.3071 -3.3962 17 6 2.1738 -6.9735 -4.6051 18 6 2.9385 -8.2943 -4.7136 19 6 2.5435 -9.0074 -6.0082 20 6 2.8878 -8.1191 -7.2054 21 6 2.1231 -6.7983 -7.0969 22 6 2.5180 -6.0851 -5.8023 23 6 2.2347 -3.6841 0.0011 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6119 -2.4062 -1.1357 26 1 0.8544 -2.0271 -2.0948 27 1 0.4578 -4.3263 -2.7095 28 1 -0.0924 -4.7581 -1.0578 29 1 1.6477 -6.2034 -0.1663 30 1 3.2717 -6.0747 -0.8835 31 1 1.7981 -7.7181 -2.0836 32 1 0.6915 -6.3822 -2.4827 33 1 1.1024 -7.1736 -4.5970 34 1 4.0099 -8.0941 -4.7218 35 1 2.6935 -8.9269 -3.8605 36 1 1.4721 -9.2076 -6.0005 37 1 3.0879 -9.9486 -6.0853 38 1 2.6059 -8.6270 -8.1277 39 1 3.9592 -7.9190 -7.2132 40 1 1.0517 -6.9985 -7.0892 41 1 2.3687 -6.1652 -7.9496 42 1 1.9730 -5.1444 -5.7248 43 1 3.5895 -5.8850 -5.8101 44 1 2.0437 -4.3247 0.8620 45 1 3.2611 -3.3185 0.0309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701401927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:47 Heat of formation + Delta-G solvation = -86.016776 kcal Electronic energy + Delta-G solvation = -21008.189563 eV Core-core repulsion = 18023.589011 eV Total energy + Delta-G solvation = -2984.600552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.32194 -39.53608 -37.32384 -35.15853 -32.95449 -31.68025 -30.60080 -29.99508 -28.77938 -26.10847 -23.89441 -23.39762 -23.06326 -21.31653 -21.26207 -20.66532 -18.58225 -17.77699 -17.12104 -16.47578 -16.33945 -16.12997 -15.70398 -15.27203 -14.99627 -14.63055 -14.48463 -14.19688 -13.99461 -13.73821 -13.29800 -13.16727 -13.04878 -12.98479 -12.72279 -12.60729 -12.35107 -12.04848 -12.01714 -11.96686 -11.81305 -11.59200 -11.43949 -11.28757 -11.18650 -11.12946 -10.83013 -10.49749 -10.21950 -9.15409 -8.12685 -6.20961 1.41210 1.42302 1.52504 2.44206 2.75575 3.16711 3.24148 3.78043 3.83996 3.98457 4.09444 4.12060 4.26204 4.30815 4.33774 4.39580 4.40364 4.45817 4.51714 4.58882 4.59299 4.61160 4.67035 4.74107 4.89432 4.93584 4.98354 5.04707 5.12221 5.14857 5.24479 5.24681 5.27124 5.33044 5.36916 5.42343 5.53131 5.55934 5.72977 5.84930 6.19272 6.29197 6.39363 6.52140 6.86980 7.45408 8.97000 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029023 B = 0.003704 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.504952 B = 7557.746541 C = 8018.668195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.526 4.526 8 H 0.052 0.948 9 C 0.032 3.968 10 H 0.002 0.998 11 C -0.084 4.084 12 C 0.048 3.952 13 N -0.519 5.519 14 C 0.046 3.954 15 C 0.069 3.931 16 O -0.390 6.390 17 C 0.084 3.916 18 C -0.136 4.136 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.113 4.113 22 C -0.117 4.117 23 C 0.055 3.945 24 H 0.260 0.740 25 H 0.040 0.960 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.035 0.965 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.689 -19.160 -11.715 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.070 0.930 9 C 0.013 3.987 10 H 0.020 0.980 11 C -0.123 4.123 12 C -0.080 4.080 13 N -0.244 5.244 14 C -0.083 4.083 15 C -0.007 4.007 16 O -0.310 6.310 17 C 0.027 3.973 18 C -0.174 4.174 19 C -0.151 4.151 20 C -0.158 4.158 21 C -0.150 4.150 22 C -0.155 4.155 23 C -0.073 4.073 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.053 0.947 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.073 -18.773 -12.097 22.544 hybrid contribution -0.486 0.891 0.942 1.384 sum 2.588 -17.883 -11.155 21.235 Atomic orbital electron populations 1.70083 1.07175 1.27222 1.51502 1.25759 0.95726 1.02428 0.94871 0.85600 0.78781 0.79377 0.78173 1.20323 1.20746 1.19221 1.21522 0.92777 0.91765 1.50357 0.93023 1.19472 0.92975 0.92838 0.93442 0.97963 1.22151 0.98407 0.93443 0.98253 1.23144 0.88925 0.96073 0.99850 1.64723 1.22891 1.07283 1.29486 1.22401 1.02200 0.87723 0.95930 1.22610 0.93907 0.98195 0.86010 1.88043 1.56795 1.68290 1.17851 1.22226 0.98088 0.92411 0.84601 1.21999 1.00643 0.95876 0.98873 1.21492 1.01830 0.98503 0.93281 1.21577 1.00253 0.95381 0.98569 1.21500 1.00653 0.96854 0.96017 1.21580 1.01679 0.98285 0.93932 1.22864 1.00027 0.94775 0.89641 0.93081 0.94142 0.94882 0.90734 0.93884 0.92509 0.90260 0.91049 0.93298 0.92198 0.92155 0.91633 0.91432 0.90624 0.90418 0.92151 0.91415 0.90914 0.92890 0.92276 0.94653 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.79 12.63 21.45 0.27 -54.52 16 2 C 0.01 0.61 5.34 84.65 0.45 1.06 16 3 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.53 -30.26 8.38 25.60 0.21 -30.05 16 8 H 0.05 2.95 7.35 -2.91 -0.02 2.93 16 9 C 0.03 1.66 2.87 -10.66 -0.03 1.63 16 10 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 11 C -0.08 -4.14 5.75 31.80 0.18 -3.96 16 12 C 0.05 1.87 5.09 86.65 0.44 2.31 16 13 N -0.52 -20.51 5.34 -883.00 -4.72 -25.23 16 14 C 0.05 1.39 5.41 86.30 0.47 1.85 16 15 C 0.07 1.81 5.57 71.98 0.40 2.21 16 16 O -0.39 -11.59 9.93 -148.98 -1.48 -13.07 16 17 C 0.08 1.93 2.61 30.60 0.08 2.01 16 18 C -0.14 -2.51 5.54 30.59 0.17 -2.34 16 19 C -0.11 -1.57 5.92 30.59 0.18 -1.39 16 20 C -0.12 -1.66 5.92 30.60 0.18 -1.48 16 21 C -0.11 -1.85 5.92 30.59 0.18 -1.67 16 22 C -0.12 -2.65 5.57 30.59 0.17 -2.48 16 23 C 0.05 2.40 6.34 86.45 0.55 2.95 16 24 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 25 H 0.04 2.08 8.12 -2.39 -0.02 2.06 16 26 H 0.03 1.78 7.86 -2.39 -0.02 1.76 16 27 H 0.07 2.76 7.56 -2.39 -0.02 2.74 16 28 H 0.04 1.54 8.01 -2.39 -0.02 1.52 16 29 H 0.06 1.57 7.81 -2.39 -0.02 1.55 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.07 1.46 7.87 -2.39 -0.02 1.44 16 32 H 0.05 1.27 6.46 -2.39 -0.02 1.26 16 33 H 0.06 1.28 7.79 -2.39 -0.02 1.26 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.13 7.87 -2.39 -0.02 1.11 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.04 1.41 7.57 -2.39 -0.02 1.39 16 45 H 0.06 2.71 7.40 -2.39 -0.02 2.69 16 Total: -1.00 -64.04 344.54 0.65 -63.39 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.91 Total: 11.61 kcal Atomic # 6 Polarization: -32.98 SS G_CDS: 3.64 Total: -29.34 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -4.45 Total: -79.75 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -1.48 Total: -13.07 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -64.04 0.65 -63.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701401927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.624 kcal (2) G-P(sol) polarization free energy of solvation -64.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds