Wall clock time and date at job start Mon Mar 30 2020 07:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99685 * 2 1 4 4 H 1.48500 * 109.47105 * 270.00376 * 3 2 1 5 5 H 1.48502 * 109.47134 * 30.00267 * 3 2 1 6 6 H 1.48497 * 109.46990 * 150.00369 * 3 2 1 7 7 C 1.38807 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00214 * 158.82655 * 7 2 1 9 9 N 1.36935 * 119.99558 * 338.83087 * 7 2 1 10 10 C 1.46501 * 120.00223 * 321.89063 * 9 7 2 11 11 C 1.52999 * 109.46979 * 270.00210 * 10 9 7 12 12 O 1.42893 * 109.47378 * 65.00054 * 11 10 9 13 13 C 1.42901 * 114.00351 * 179.97438 * 12 11 10 14 14 C 1.54262 * 110.03188 * 267.90974 * 13 12 11 15 15 C 1.54972 * 104.15863 * 217.13271 * 14 13 12 16 16 C 1.54900 * 102.77452 * 37.88922 * 15 14 13 17 17 C 1.53873 * 110.03222 * 150.69056 * 13 12 11 18 18 C 1.46509 * 119.99761 * 141.89501 * 9 7 2 19 19 C 1.54272 * 110.03110 * 297.70139 * 18 9 7 20 20 C 1.54968 * 104.15495 * 95.75846 * 19 18 9 21 21 C 1.54883 * 102.78088 * 37.88731 * 20 19 18 22 22 C 1.53868 * 110.03418 * 54.92200 * 18 9 7 23 23 H 0.97003 * 120.00377 * 355.06325 * 1 2 3 24 24 H 1.08995 * 109.47225 * 30.00447 * 10 9 7 25 25 H 1.08999 * 109.46935 * 150.00517 * 10 9 7 26 26 H 1.09000 * 109.47183 * 185.00064 * 11 10 9 27 27 H 1.09008 * 109.47187 * 304.99565 * 11 10 9 28 28 H 1.09003 * 110.01675 * 29.29942 * 13 12 11 29 29 H 1.09000 * 110.48837 * 335.77840 * 14 13 12 30 30 H 1.08996 * 110.48748 * 98.42613 * 14 13 12 31 31 H 1.08997 * 110.72179 * 279.57848 * 15 14 13 32 32 H 1.08996 * 110.92217 * 156.29120 * 15 14 13 33 33 H 1.09000 * 110.48415 * 203.40480 * 16 15 14 34 34 H 1.09000 * 110.59612 * 80.81874 * 16 15 14 35 35 H 1.09008 * 110.02993 * 238.57335 * 17 13 12 36 36 H 1.08998 * 110.03395 * 359.94874 * 17 13 12 37 37 H 1.09004 * 110.01542 * 176.31261 * 18 9 7 38 38 H 1.08991 * 110.48706 * 214.40175 * 19 18 9 39 39 H 1.08998 * 110.48306 * 337.04819 * 19 18 9 40 40 H 1.09004 * 110.71498 * 279.57275 * 20 19 18 41 41 H 1.08999 * 110.91977 * 156.30009 * 20 19 18 42 42 H 1.08998 * 110.48714 * 203.40888 * 21 20 19 43 43 H 1.08999 * 110.59846 * 80.81722 * 21 20 19 44 44 H 1.09000 * 110.03325 * 359.95058 * 22 18 9 45 45 H 1.08999 * 110.03666 * 121.38298 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0356 -1.2334 -0.3384 9 7 1.3949 -2.3481 0.4272 10 6 0.4752 -2.3043 1.5667 11 6 1.2550 -2.5445 2.8610 12 8 2.1705 -1.4679 3.0724 13 6 2.9525 -1.5949 4.2617 14 6 2.2508 -0.8792 5.4344 15 6 3.4128 -0.2521 6.2456 16 6 4.3925 0.2109 5.1387 17 6 4.3137 -0.9024 4.0739 18 6 1.6564 -3.6182 -0.2547 19 6 1.1912 -3.5351 -1.7233 20 6 2.4753 -3.1631 -2.5070 21 6 3.5715 -3.9754 -1.7740 22 6 3.1691 -3.8977 -0.2867 23 1 -0.4851 0.8369 0.0723 24 1 -0.0055 -1.3269 1.6083 25 1 -0.2838 -3.0779 1.4510 26 1 0.5601 -2.6004 3.6988 27 1 1.8072 -3.4812 2.7839 28 1 3.0992 -2.6481 4.5011 29 1 1.5828 -0.1023 5.0624 30 1 1.7016 -1.5958 6.0449 31 1 3.8808 -0.9977 6.8884 32 1 3.0638 0.5974 6.8325 33 1 5.4052 0.2897 5.5341 34 1 4.0729 1.1644 4.7181 35 1 5.1211 -1.6195 4.2230 36 1 4.3782 -0.4704 3.0753 37 1 1.1375 -4.4295 0.2560 38 1 0.8067 -4.4988 -2.0568 39 1 0.4339 -2.7599 -1.8402 40 1 2.6743 -2.0937 -2.4358 41 1 2.3980 -3.4715 -3.5496 42 1 4.5503 -3.5213 -1.9285 43 1 3.5741 -5.0107 -2.1149 44 1 3.7089 -3.0879 0.2043 45 1 3.3845 -4.8446 0.2083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701429970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:31 Heat of formation + Delta-G solvation = -61.140380 kcal Electronic energy + Delta-G solvation = -22168.573380 eV Core-core repulsion = 19185.051549 eV Total energy + Delta-G solvation = -2983.521831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.86068 -39.22861 -36.94155 -35.48645 -32.94376 -30.29638 -29.58637 -29.26953 -28.28322 -28.05716 -25.24881 -22.67725 -21.59812 -21.20661 -21.09957 -20.63839 -18.25102 -17.71724 -16.85855 -16.55366 -16.52760 -15.95036 -15.86534 -15.34174 -14.73279 -14.57617 -14.33209 -14.24191 -13.92608 -13.25703 -13.16173 -12.88060 -12.67429 -12.57190 -12.29306 -12.12746 -12.00878 -11.95947 -11.87722 -11.77530 -11.71796 -11.65213 -11.50607 -11.40208 -11.33762 -11.25392 -11.04027 -10.31888 -10.12687 -8.40652 -7.62259 -5.23631 1.42548 1.46824 1.55611 2.61752 3.08544 3.43808 3.67736 3.72743 3.75118 4.03779 4.05882 4.08940 4.31746 4.35303 4.52902 4.55280 4.59221 4.70179 4.75001 4.75490 4.81157 4.83379 4.88644 4.92856 5.00191 5.02092 5.04881 5.07901 5.10745 5.16220 5.23571 5.28781 5.31113 5.33725 5.35898 5.44835 5.61593 5.67236 5.76312 5.81626 5.94143 6.61266 6.80686 7.35802 8.06196 8.56061 9.30570 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.007287 C = 0.006269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.181033 B = 3841.312877 C = 4465.219023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.030 4.030 3 Si 0.927 3.073 4 H -0.291 1.291 5 H -0.300 1.300 6 H -0.280 1.280 7 C -0.196 4.196 8 H 0.044 0.956 9 N -0.581 5.581 10 C 0.141 3.859 11 C 0.061 3.939 12 O -0.378 6.378 13 C 0.071 3.929 14 C -0.146 4.146 15 C -0.112 4.112 16 C -0.121 4.121 17 C -0.124 4.124 18 C 0.159 3.841 19 C -0.125 4.125 20 C -0.114 4.114 21 C -0.109 4.109 22 C -0.125 4.125 23 H 0.241 0.759 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.033 0.967 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.044 0.956 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.688 -7.332 8.220 12.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.226 4.226 3 Si 0.758 3.242 4 H -0.219 1.219 5 H -0.227 1.227 6 H -0.206 1.206 7 C -0.327 4.327 8 H 0.061 0.939 9 N -0.301 5.301 10 C 0.015 3.985 11 C -0.018 4.018 12 O -0.297 6.297 13 C 0.013 3.987 14 C -0.184 4.184 15 C -0.149 4.149 16 C -0.159 4.159 17 C -0.162 4.162 18 C 0.053 3.947 19 C -0.164 4.164 20 C -0.151 4.151 21 C -0.147 4.147 22 C -0.165 4.165 23 H 0.050 0.950 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.063 0.937 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.597 -7.057 8.025 12.558 hybrid contribution -0.021 1.174 0.018 1.174 sum 6.576 -5.883 8.043 11.939 Atomic orbital electron populations 1.70145 1.06233 1.25191 1.55108 1.25364 0.95167 1.00047 1.02006 0.85907 0.78839 0.82647 0.76792 1.21900 1.22693 1.20587 1.18638 0.92481 0.86257 1.35326 0.93858 1.43936 1.51539 1.03672 1.30933 1.20919 0.91195 1.01521 0.84910 1.23172 0.91607 0.88834 0.98196 1.88238 1.53686 1.45613 1.42119 1.22937 0.91455 0.98620 0.85662 1.22896 0.98649 1.00040 0.96796 1.22415 0.94950 1.00791 0.96755 1.22332 1.00663 0.97253 0.95649 1.22218 0.95896 0.98634 0.99413 1.21294 0.94088 0.87553 0.91783 1.22686 0.97305 0.99255 0.97195 1.22349 0.95403 0.99228 0.98161 1.22231 0.97657 1.00027 0.94787 1.22488 0.97112 1.00102 0.96761 0.94968 0.91835 0.93471 0.94199 0.94643 0.91884 0.93120 0.90555 0.89508 0.90590 0.89490 0.93323 0.89813 0.93706 0.92331 0.91404 0.94831 0.94056 0.91521 0.92521 0.90209 0.93677 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.00 11.49 21.65 0.25 -54.75 16 2 C -0.03 -1.74 4.95 84.86 0.42 -1.32 16 3 Si 0.93 47.58 29.61 68.60 2.03 49.62 16 4 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 5 H -0.30 -15.60 7.11 99.48 0.71 -14.90 16 6 H -0.28 -14.24 7.11 99.48 0.71 -13.53 16 7 C -0.20 -10.62 6.82 84.03 0.57 -10.04 16 8 H 0.04 2.44 6.70 -2.91 -0.02 2.42 16 9 N -0.58 -28.07 2.30 -674.01 -1.55 -29.62 16 10 C 0.14 6.59 5.69 86.38 0.49 7.08 16 11 C 0.06 2.42 6.12 71.98 0.44 2.86 16 12 O -0.38 -16.38 9.37 -148.98 -1.40 -17.78 16 13 C 0.07 2.37 3.38 31.32 0.11 2.47 16 14 C -0.15 -4.17 6.56 31.70 0.21 -3.96 16 15 C -0.11 -2.51 6.91 31.92 0.22 -2.29 16 16 C -0.12 -3.13 6.83 31.67 0.22 -2.92 16 17 C -0.12 -3.87 6.61 31.32 0.21 -3.66 16 18 C 0.16 6.45 3.47 45.71 0.16 6.61 16 19 C -0.13 -4.95 6.17 31.70 0.20 -4.75 16 20 C -0.11 -4.17 6.57 31.91 0.21 -3.96 16 21 C -0.11 -3.46 6.83 31.67 0.22 -3.24 16 22 C -0.13 -4.51 6.15 31.32 0.19 -4.32 16 23 H 0.24 14.25 8.32 -92.71 -0.77 13.48 16 24 H 0.06 3.51 5.55 -2.39 -0.01 3.50 16 25 H 0.05 2.04 7.97 -2.39 -0.02 2.02 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.32 8.10 -2.38 -0.02 1.30 16 28 H 0.06 1.88 7.81 -2.39 -0.02 1.86 16 29 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.04 1.73 7.95 -2.39 -0.02 1.71 16 37 H 0.06 2.18 7.86 -2.38 -0.02 2.16 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.03 1.61 8.04 -2.39 -0.02 1.59 16 40 H 0.04 1.79 7.17 -2.38 -0.02 1.77 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.04 1.89 6.70 -2.39 -0.02 1.87 16 45 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -63.40 345.10 4.11 -59.29 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.92 Total: 14.69 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: 3.86 Total: -21.44 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -1.30 Total: -84.38 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -1.40 Total: -17.78 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.62 kcal Total: -63.40 4.11 -59.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701429970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.849 kcal (2) G-P(sol) polarization free energy of solvation -63.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds