Wall clock time and date at job start Mon Mar 30 2020 06:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.09000 * 110.88531 * 300.70276 * 9 7 2 11 11 C 1.55159 * 111.00335 * 176.81628 * 9 7 2 12 12 C 1.54370 * 102.91659 * 206.45168 * 11 9 7 13 13 N 1.47024 * 107.29114 * 22.14427 * 12 11 9 14 14 C 1.34777 * 125.64800 * 181.12636 * 13 12 11 15 15 O 1.21502 * 119.99997 * 179.97438 * 14 13 12 16 16 O 1.34634 * 119.99939 * 359.95845 * 14 13 12 17 17 C 1.45196 * 116.99981 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47172 * 269.99599 * 17 16 14 19 19 C 1.52998 * 109.47519 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47237 * 59.99982 * 19 18 17 21 21 C 1.52998 * 109.46951 * 300.00039 * 20 19 18 22 22 C 1.52998 * 109.47411 * 149.99687 * 17 16 14 23 23 C 1.47424 * 108.70192 * 1.08620 * 13 12 11 24 24 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 25 25 H 1.08992 * 110.72135 * 324.78697 * 11 9 7 26 26 H 1.08995 * 110.71773 * 88.06182 * 11 9 7 27 27 H 1.09002 * 109.84724 * 262.73353 * 12 11 9 28 28 H 1.09000 * 109.89908 * 141.58053 * 12 11 9 29 29 H 1.08997 * 109.47184 * 29.99560 * 17 16 14 30 30 H 1.09000 * 109.47478 * 299.99803 * 18 17 16 31 31 H 1.09007 * 109.47128 * 60.00118 * 18 17 16 32 32 H 1.09011 * 109.47130 * 299.99838 * 19 18 17 33 33 H 1.09004 * 109.47573 * 180.02562 * 19 18 17 34 34 H 1.09004 * 109.47450 * 180.02562 * 20 19 18 35 35 H 1.08997 * 109.47050 * 60.00110 * 20 19 18 36 36 H 1.09000 * 109.47745 * 300.00166 * 21 20 19 37 37 H 1.09007 * 109.47198 * 179.97438 * 21 20 19 38 38 H 1.09007 * 109.47286 * 299.99826 * 22 17 16 39 39 H 1.09003 * 109.47480 * 59.99712 * 22 17 16 40 40 H 1.08997 * 110.36741 * 217.03189 * 23 13 12 41 41 H 1.09005 * 110.45682 * 94.76015 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.9005 -0.6735 -0.8751 11 6 4.0677 -2.6403 0.0797 12 6 5.4488 -2.4431 0.7407 13 7 5.4081 -1.1640 1.4645 14 6 6.4288 -0.6205 2.1568 15 8 6.2817 0.4469 2.7184 16 8 7.6113 -1.2604 2.2264 17 6 8.6654 -0.6166 2.9897 18 6 9.4773 0.2962 2.0686 19 6 10.5876 0.9752 2.8729 20 6 11.5065 -0.0902 3.4741 21 6 10.6946 -1.0030 4.3952 22 6 9.5841 -1.6824 3.5903 23 6 4.0663 -0.5740 1.3068 24 1 -0.4850 0.8400 -0.0004 25 1 3.4282 -3.2656 0.7026 26 1 4.1741 -3.0680 -0.9171 27 1 6.2242 -2.4114 -0.0247 28 1 5.6461 -3.2574 1.4378 29 1 8.2238 -0.0241 3.7909 30 1 9.9190 -0.2962 1.2673 31 1 8.8228 1.0556 1.6407 32 1 10.1456 1.5678 3.6740 33 1 11.1658 1.6259 2.2168 34 1 12.2973 0.3935 4.0475 35 1 11.9485 -0.6827 2.6730 36 1 10.2525 -0.4105 5.1963 37 1 11.3491 -1.7624 4.8232 38 1 9.0057 -2.3327 4.2466 39 1 10.0258 -2.2749 2.7890 40 1 4.1370 0.5095 1.2125 41 1 3.4315 -0.8399 2.1522 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704269590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:11 Heat of formation + Delta-G solvation = -100.952770 kcal Electronic energy + Delta-G solvation = -20987.537393 eV Core-core repulsion = 17866.456073 eV Total energy + Delta-G solvation = -3121.081320 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.36030 -38.60791 -37.25164 -35.54368 -33.00461 -31.13945 -31.02610 -29.90145 -28.72062 -25.15921 -23.21868 -22.83451 -22.22734 -20.12251 -20.02449 -19.72331 -17.62944 -17.00050 -16.79659 -15.97062 -15.43989 -14.82249 -14.55396 -14.29327 -14.08228 -13.61595 -13.23742 -13.14092 -12.87624 -12.72805 -12.46648 -12.29467 -12.23355 -11.66853 -11.40319 -11.28676 -11.00342 -10.95230 -10.88942 -10.62914 -10.55966 -10.34063 -10.16433 -9.96761 -9.88594 -9.65852 -9.23741 -8.66311 -8.20981 -6.18500 -4.20679 2.43244 3.20487 3.27908 3.35730 3.39428 4.19724 4.33978 4.47311 4.49078 4.71684 4.96320 4.97860 5.09616 5.15908 5.21651 5.24181 5.33883 5.38562 5.50986 5.57954 5.65130 5.76274 5.78556 5.83221 5.88904 5.96481 5.99490 6.08762 6.12358 6.15598 6.38978 6.51394 6.61315 6.64787 6.72668 6.84340 7.29259 7.59377 7.96823 8.39088 8.67905 8.84947 9.42373 10.93668 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.034319 B = 0.004484 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.685368 B = 6242.690834 C = 6746.090364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.869 3.131 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.512 4.512 8 H 0.081 0.919 9 C 0.007 3.993 10 H 0.044 0.956 11 C -0.116 4.116 12 C 0.106 3.894 13 N -0.598 5.598 14 C 0.655 3.345 15 O -0.581 6.581 16 O -0.366 6.366 17 C 0.107 3.893 18 C -0.137 4.137 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.115 4.115 22 C -0.115 4.115 23 C 0.113 3.887 24 H 0.267 0.733 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.141 -3.090 5.311 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.697 3.303 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.550 4.550 8 H 0.099 0.901 9 C -0.012 4.012 10 H 0.062 0.938 11 C -0.154 4.154 12 C -0.017 4.017 13 N -0.338 5.338 14 C 0.410 3.590 15 O -0.471 6.471 16 O -0.281 6.281 17 C 0.051 3.949 18 C -0.174 4.174 19 C -0.153 4.153 20 C -0.160 4.160 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.007 4.007 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 21.048 -2.612 5.556 21.925 hybrid contribution 0.351 1.081 0.085 1.140 sum 21.399 -1.530 5.641 22.183 Atomic orbital electron populations 1.69873 1.06239 1.27273 1.49543 1.25007 0.94721 0.98973 0.93951 0.87073 0.80174 0.83935 0.79126 1.19755 1.21437 1.18861 1.20840 0.87517 0.94826 1.51815 0.90072 1.20418 0.97033 0.91796 0.91997 0.93756 1.22598 0.93167 0.99578 1.00097 1.22087 0.99622 0.84719 0.95237 1.47589 1.11313 1.23554 1.51344 1.17714 0.80055 0.82165 0.79086 1.90944 1.83151 1.22573 1.50468 1.86292 1.20702 1.51126 1.69982 1.22604 0.84762 0.93992 0.93500 1.21955 0.97663 0.99146 0.98682 1.21487 0.96353 0.97765 0.99713 1.21599 0.97895 0.97344 0.99185 1.21516 0.96724 0.99014 0.98045 1.21624 0.96219 0.97477 0.99978 1.23307 0.77983 0.97840 1.01610 0.92338 0.90654 0.90878 0.92083 0.92077 0.89680 0.91112 0.91138 0.91595 0.91423 0.91724 0.91708 0.91577 0.91125 0.91030 0.90801 0.92157 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 2 C 0.08 2.15 5.46 -17.82 -0.10 2.06 16 3 Si 0.87 21.67 24.66 -169.99 -4.19 17.48 16 4 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.26 -6.40 6.50 56.52 0.37 -6.03 16 7 C -0.51 -13.70 9.10 -34.44 -0.31 -14.01 16 8 H 0.08 2.31 8.02 -52.49 -0.42 1.89 16 9 C 0.01 0.16 2.40 -89.62 -0.21 -0.05 16 10 H 0.04 1.03 7.20 -51.93 -0.37 0.65 16 11 C -0.12 -2.11 6.40 -24.87 -0.16 -2.27 16 12 C 0.11 1.78 6.89 -3.04 -0.02 1.76 16 13 N -0.60 -12.09 3.33 -176.27 -0.59 -12.68 16 14 C 0.66 13.24 8.59 54.06 0.46 13.71 16 15 O -0.58 -13.29 15.86 -19.27 -0.31 -13.60 16 16 O -0.37 -6.14 9.48 -40.31 -0.38 -6.52 16 17 C 0.11 1.45 2.46 -26.73 -0.07 1.39 16 18 C -0.14 -1.66 5.56 -26.73 -0.15 -1.81 16 19 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 20 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 21 C -0.12 -0.93 5.93 -26.70 -0.16 -1.09 16 22 C -0.12 -1.17 5.59 -26.70 -0.15 -1.32 16 23 C 0.11 2.55 5.30 -2.53 -0.01 2.54 16 24 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.07 1.37 8.03 -51.93 -0.42 0.95 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.09 1.28 7.16 -51.93 -0.37 0.91 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.01 8.14 -51.92 -0.42 0.58 16 32 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.47 5.18 -51.93 -0.27 1.20 16 41 H 0.07 1.73 8.03 -51.93 -0.42 1.32 16 LS Contribution 321.31 15.07 4.84 4.84 Total: -1.00 -30.95 321.31 -7.98 -38.93 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.93 Total: -1.25 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.19 Total: -1.45 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.19 Total: -38.43 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.69 Total: -20.12 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.19 Total: 17.48 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.95 -7.98 -38.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704269590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.020 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds