Wall clock time and date at job start Mon Mar 30 2020 06:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.09000 * 110.88531 * 300.70276 * 9 7 2 11 11 C 1.55159 * 111.00335 * 176.81628 * 9 7 2 12 12 C 1.54370 * 102.91659 * 206.45168 * 11 9 7 13 13 N 1.47024 * 107.29114 * 22.14427 * 12 11 9 14 14 C 1.34777 * 125.64800 * 181.12636 * 13 12 11 15 15 O 1.21502 * 119.99997 * 179.97438 * 14 13 12 16 16 O 1.34634 * 119.99939 * 359.95845 * 14 13 12 17 17 C 1.45196 * 116.99981 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47172 * 269.99599 * 17 16 14 19 19 C 1.52998 * 109.47519 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47237 * 59.99982 * 19 18 17 21 21 C 1.52998 * 109.46951 * 300.00039 * 20 19 18 22 22 C 1.52998 * 109.47411 * 149.99687 * 17 16 14 23 23 C 1.47424 * 108.70192 * 1.08620 * 13 12 11 24 24 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 25 25 H 1.08992 * 110.72135 * 324.78697 * 11 9 7 26 26 H 1.08995 * 110.71773 * 88.06182 * 11 9 7 27 27 H 1.09002 * 109.84724 * 262.73353 * 12 11 9 28 28 H 1.09000 * 109.89908 * 141.58053 * 12 11 9 29 29 H 1.08997 * 109.47184 * 29.99560 * 17 16 14 30 30 H 1.09000 * 109.47478 * 299.99803 * 18 17 16 31 31 H 1.09007 * 109.47128 * 60.00118 * 18 17 16 32 32 H 1.09011 * 109.47130 * 299.99838 * 19 18 17 33 33 H 1.09004 * 109.47573 * 180.02562 * 19 18 17 34 34 H 1.09004 * 109.47450 * 180.02562 * 20 19 18 35 35 H 1.08997 * 109.47050 * 60.00110 * 20 19 18 36 36 H 1.09000 * 109.47745 * 300.00166 * 21 20 19 37 37 H 1.09007 * 109.47198 * 179.97438 * 21 20 19 38 38 H 1.09007 * 109.47286 * 299.99826 * 22 17 16 39 39 H 1.09003 * 109.47480 * 59.99712 * 22 17 16 40 40 H 1.08997 * 110.36741 * 217.03189 * 23 13 12 41 41 H 1.09005 * 110.45682 * 94.76015 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.9005 -0.6735 -0.8751 11 6 4.0677 -2.6403 0.0797 12 6 5.4488 -2.4431 0.7407 13 7 5.4081 -1.1640 1.4645 14 6 6.4288 -0.6205 2.1568 15 8 6.2817 0.4469 2.7184 16 8 7.6113 -1.2604 2.2264 17 6 8.6654 -0.6166 2.9897 18 6 9.4773 0.2962 2.0686 19 6 10.5876 0.9752 2.8729 20 6 11.5065 -0.0902 3.4741 21 6 10.6946 -1.0030 4.3952 22 6 9.5841 -1.6824 3.5903 23 6 4.0663 -0.5740 1.3068 24 1 -0.4850 0.8400 -0.0004 25 1 3.4282 -3.2656 0.7026 26 1 4.1741 -3.0680 -0.9171 27 1 6.2242 -2.4114 -0.0247 28 1 5.6461 -3.2574 1.4378 29 1 8.2238 -0.0241 3.7909 30 1 9.9190 -0.2962 1.2673 31 1 8.8228 1.0556 1.6407 32 1 10.1456 1.5678 3.6740 33 1 11.1658 1.6259 2.2168 34 1 12.2973 0.3935 4.0475 35 1 11.9485 -0.6827 2.6730 36 1 10.2525 -0.4105 5.1963 37 1 11.3491 -1.7624 4.8232 38 1 9.0057 -2.3327 4.2466 39 1 10.0258 -2.2749 2.7890 40 1 4.1370 0.5095 1.2125 41 1 3.4315 -0.8399 2.1522 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704269590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:11 Heat of formation + Delta-G solvation = -119.703965 kcal Electronic energy + Delta-G solvation = -20988.350506 eV Core-core repulsion = 17866.456073 eV Total energy + Delta-G solvation = -3121.894433 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.79189 -39.86257 -38.57758 -36.94145 -35.01719 -32.86276 -31.80939 -30.88928 -30.35947 -27.03453 -24.69855 -23.66868 -23.33044 -21.58971 -21.45237 -20.85895 -19.16930 -18.98218 -18.17095 -17.48978 -16.59670 -16.41169 -16.02369 -15.28477 -15.19932 -14.90058 -14.77890 -14.58302 -14.37092 -14.04942 -13.72681 -13.69020 -13.29937 -13.22848 -12.89580 -12.50762 -12.40018 -12.14075 -12.11938 -11.97880 -11.84353 -11.65765 -11.53855 -11.47202 -11.39684 -11.22803 -10.93786 -10.81871 -9.81169 -8.36889 -6.40835 0.98696 1.26654 1.32804 1.37633 1.63250 2.24643 2.88396 2.97853 3.62700 3.65100 3.82629 3.87876 3.95350 4.16005 4.16961 4.22531 4.27989 4.35860 4.43435 4.47176 4.57870 4.58800 4.62563 4.81041 4.85368 4.90555 5.01977 5.06401 5.10831 5.13599 5.15142 5.24888 5.27480 5.28941 5.34702 5.49131 5.51286 5.60967 6.24549 6.41058 6.68315 7.12569 7.25250 8.78965 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.034319 B = 0.004484 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.685368 B = 6242.690834 C = 6746.090364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.029 3.971 3 Si 0.920 3.080 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.253 1.253 7 C -0.507 4.507 8 H 0.056 0.944 9 C 0.002 3.998 10 H 0.044 0.956 11 C -0.107 4.107 12 C 0.109 3.891 13 N -0.603 5.603 14 C 0.656 3.344 15 O -0.616 6.616 16 O -0.358 6.358 17 C 0.097 3.903 18 C -0.134 4.134 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.113 4.113 22 C -0.109 4.109 23 C 0.119 3.881 24 H 0.268 0.732 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.041 0.959 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.424 -4.093 5.282 25.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.170 4.170 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.545 4.545 8 H 0.074 0.926 9 C -0.018 4.018 10 H 0.063 0.937 11 C -0.145 4.145 12 C -0.013 4.013 13 N -0.343 5.343 14 C 0.411 3.589 15 O -0.509 6.509 16 O -0.272 6.272 17 C 0.042 3.958 18 C -0.172 4.172 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.150 4.150 22 C -0.146 4.146 23 C -0.002 4.002 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.117 0.883 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 24.372 -3.648 5.516 25.253 hybrid contribution -0.641 1.329 0.125 1.481 sum 23.731 -2.319 5.641 24.503 Atomic orbital electron populations 1.69979 1.07692 1.28079 1.51833 1.25655 0.95214 1.01910 0.94197 0.86246 0.79563 0.80821 0.78727 1.20521 1.20924 1.17679 1.21100 0.89840 0.93561 1.49985 0.92629 1.20331 0.94390 0.95242 0.91800 0.93750 1.22563 0.93639 0.96451 1.01867 1.22272 0.99217 0.83731 0.96033 1.47547 1.10461 1.24571 1.51769 1.17777 0.80850 0.81758 0.78521 1.90917 1.83928 1.24205 1.51817 1.86303 1.19869 1.50806 1.70219 1.23034 0.84313 0.95433 0.93049 1.21954 0.97834 0.98348 0.99060 1.21506 0.95830 0.98353 0.99415 1.21601 0.97710 0.96794 0.99515 1.21553 0.96251 0.99555 0.97683 1.21669 0.96038 0.96560 1.00365 1.22915 0.79544 0.96737 1.01021 0.92234 0.90872 0.88291 0.89698 0.89574 0.91795 0.90017 0.94120 0.92416 0.90187 0.89928 0.90727 0.91999 0.88799 0.91042 0.89669 0.94112 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.97 13.96 21.45 0.30 -56.67 16 2 C 0.03 1.68 5.46 84.65 0.46 2.14 16 3 Si 0.92 45.38 24.66 68.60 1.69 47.08 16 4 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 5 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.25 -11.87 6.50 99.48 0.65 -11.23 16 7 C -0.51 -27.39 9.10 25.60 0.23 -27.15 16 8 H 0.06 3.23 8.02 -2.92 -0.02 3.21 16 9 C 0.00 0.09 2.40 -10.14 -0.02 0.07 16 10 H 0.04 1.99 7.20 -2.39 -0.02 1.98 16 11 C -0.11 -3.65 6.40 31.80 0.20 -3.45 16 12 C 0.11 3.31 6.89 86.74 0.60 3.91 16 13 N -0.60 -23.62 3.33 -942.00 -3.13 -26.75 16 14 C 0.66 26.08 8.59 129.79 1.12 27.19 16 15 O -0.62 -28.54 15.86 19.83 0.31 -28.22 16 16 O -0.36 -11.47 9.48 -55.44 -0.53 -12.00 16 17 C 0.10 2.52 2.46 30.59 0.08 2.59 16 18 C -0.13 -3.10 5.56 30.59 0.17 -2.93 16 19 C -0.11 -1.91 5.92 30.59 0.18 -1.73 16 20 C -0.12 -1.44 5.92 30.59 0.18 -1.25 16 21 C -0.11 -1.47 5.93 30.61 0.18 -1.29 16 22 C -0.11 -1.93 5.59 30.61 0.17 -1.76 16 23 C 0.12 5.39 5.30 86.86 0.46 5.85 16 24 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 25 H 0.07 2.52 8.03 -2.39 -0.02 2.50 16 26 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 27 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.06 1.94 7.16 -2.39 -0.02 1.92 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.04 1.99 5.18 -2.39 -0.01 1.98 16 41 H 0.06 2.87 8.03 -2.38 -0.02 2.85 16 Total: -1.00 -68.27 321.31 3.58 -64.69 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.93 Total: 9.70 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 4.01 Total: 2.18 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -2.83 Total: -83.42 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -0.21 Total: -40.22 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.69 Total: 47.08 kcal Total: -68.27 3.58 -64.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704269590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.017 kcal (2) G-P(sol) polarization free energy of solvation -68.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds