Wall clock time and date at job start Mon Mar 30 2020 06:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99607 * 2 1 4 4 H 1.48506 * 109.47161 * 239.99686 * 3 2 1 5 5 H 1.48494 * 109.47566 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47144 * 120.00422 * 3 2 1 7 7 C 1.37880 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99311 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00182 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.88722 * 59.30051 * 9 7 2 11 11 C 1.55154 * 111.00241 * 183.17982 * 9 7 2 12 12 C 1.54327 * 102.94290 * 153.61555 * 11 9 7 13 13 N 1.47029 * 107.26790 * 337.80696 * 12 11 9 14 14 C 1.34773 * 125.64745 * 178.89726 * 13 12 11 15 15 O 1.21506 * 120.00231 * 180.02562 * 14 13 12 16 16 O 1.34641 * 120.00000 * 0.02562 * 14 13 12 17 17 C 1.45208 * 116.99904 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46795 * 269.99810 * 17 16 14 19 19 C 1.53003 * 109.47139 * 180.02562 * 18 17 16 20 20 C 1.53002 * 109.46760 * 59.99623 * 19 18 17 21 21 C 1.52993 * 109.47525 * 300.00223 * 20 19 18 22 22 C 1.52997 * 109.46812 * 149.99980 * 17 16 14 23 23 C 1.47418 * 108.70495 * 358.93814 * 13 12 11 24 24 H 0.96995 * 120.00371 * 359.97438 * 1 2 3 25 25 H 1.09004 * 110.72212 * 271.97577 * 11 9 7 26 26 H 1.09001 * 110.72124 * 35.25696 * 11 9 7 27 27 H 1.08993 * 109.88730 * 97.22288 * 12 11 9 28 28 H 1.09003 * 109.88555 * 218.39558 * 12 11 9 29 29 H 1.08994 * 109.47059 * 29.99433 * 17 16 14 30 30 H 1.09001 * 109.47180 * 300.00316 * 18 17 16 31 31 H 1.09002 * 109.47267 * 59.99975 * 18 17 16 32 32 H 1.08998 * 109.46665 * 300.00114 * 19 18 17 33 33 H 1.08992 * 109.47454 * 180.02562 * 19 18 17 34 34 H 1.09006 * 109.46398 * 179.97438 * 20 19 18 35 35 H 1.08998 * 109.47131 * 60.00776 * 20 19 18 36 36 H 1.09001 * 109.47112 * 299.99936 * 21 20 19 37 37 H 1.09002 * 109.47191 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47475 * 299.99762 * 22 17 16 39 39 H 1.08998 * 109.47387 * 60.00175 * 22 17 16 40 40 H 1.08995 * 110.37279 * 265.29528 * 23 13 12 41 41 H 1.08997 * 110.36990 * 142.96726 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6062 -2.5756 -0.8760 11 6 2.2256 -3.7038 0.0792 12 6 1.3644 -4.8021 0.7377 13 7 0.2767 -4.1282 1.4620 14 6 -0.7045 -4.7411 2.1533 15 8 -1.5556 -4.0807 2.7153 16 8 -0.7417 -6.0853 2.2211 17 6 -1.8273 -6.6771 2.9825 18 6 -1.3943 -6.8474 4.4401 19 6 -2.5379 -7.4716 5.2423 20 6 -2.8886 -8.8386 4.6513 21 6 -3.3216 -8.6683 3.1938 22 6 -2.1785 -8.0440 2.3918 23 6 0.4366 -2.6710 1.3059 24 1 -0.4850 0.8400 0.0004 25 1 2.5437 -4.0092 -0.9177 26 1 3.0864 -3.4630 0.7030 27 1 0.9495 -5.4571 -0.0283 28 1 1.9708 -5.3808 1.4345 29 1 -2.7003 -6.0262 2.9366 30 1 -0.5211 -7.4983 4.4860 31 1 -1.1440 -5.8736 4.8609 32 1 -3.4112 -6.8210 5.1963 33 1 -2.2296 -7.5925 6.2807 34 1 -3.7030 -9.2834 5.2231 35 1 -2.0153 -9.4892 4.6972 36 1 -4.1950 -8.0178 3.1479 37 1 -3.5718 -9.6421 2.7729 38 1 -2.4870 -7.9228 1.3534 39 1 -1.3055 -8.6950 2.4378 40 1 0.9848 -2.2567 2.1520 41 1 -0.5372 -2.1904 1.2118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704269591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:14 Heat of formation + Delta-G solvation = -107.428026 kcal Electronic energy + Delta-G solvation = -20851.409614 eV Core-core repulsion = 17730.047506 eV Total energy + Delta-G solvation = -3121.362108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.15940 -38.41312 -37.02231 -35.34551 -33.00501 -30.94410 -30.82152 -29.73847 -28.06835 -25.12343 -23.20207 -22.74437 -22.03345 -20.01146 -19.96283 -19.49771 -17.37350 -16.68720 -16.50871 -15.77632 -15.26653 -14.57336 -14.46960 -14.34692 -14.05124 -13.63642 -13.08558 -12.74659 -12.72450 -12.37229 -12.32592 -12.02153 -11.80848 -11.49213 -11.29808 -11.18431 -10.94777 -10.86999 -10.79820 -10.60659 -10.57969 -10.44988 -9.99740 -9.87829 -9.80268 -9.33535 -9.08561 -8.54706 -7.91865 -6.11603 -4.17388 2.65766 3.29273 3.34894 3.36243 3.43256 4.34227 4.41969 4.56720 4.58363 4.81393 5.05475 5.08640 5.21256 5.26501 5.30998 5.33097 5.47320 5.55426 5.62190 5.74416 5.79900 5.85398 5.91586 5.95560 5.97471 6.05068 6.17228 6.19960 6.28726 6.47790 6.72606 6.78465 6.88067 6.97046 7.00509 7.41898 7.65680 7.87848 8.24802 8.26208 8.84798 8.92759 9.48663 10.97849 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.041397 B = 0.003857 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.214810 B = 7257.019197 C = 7549.657822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.047 3.953 10 H 0.042 0.958 11 C -0.129 4.129 12 C 0.108 3.892 13 N -0.599 5.599 14 C 0.653 3.347 15 O -0.580 6.580 16 O -0.370 6.370 17 C 0.108 3.892 18 C -0.136 4.136 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.115 4.115 22 C -0.115 4.115 23 C 0.135 3.865 24 H 0.265 0.735 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.107 -16.581 6.001 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.027 3.973 10 H 0.060 0.940 11 C -0.167 4.167 12 C -0.015 4.015 13 N -0.339 5.339 14 C 0.408 3.592 15 O -0.471 6.471 16 O -0.285 6.285 17 C 0.052 3.948 18 C -0.174 4.174 19 C -0.153 4.153 20 C -0.160 4.160 21 C -0.153 4.153 22 C -0.153 4.153 23 C 0.015 3.985 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.629 -16.335 6.243 17.860 hybrid contribution 0.379 0.960 0.103 1.038 sum -3.250 -15.374 6.345 16.947 Atomic orbital electron populations 1.69935 1.05978 1.27258 1.49013 1.25065 0.94912 0.99457 0.94472 0.86581 0.79542 0.82760 0.78692 1.20139 1.21229 1.20128 1.20933 0.92925 0.89596 1.52280 0.91941 1.19868 0.92411 0.92169 0.92807 0.93971 1.22753 0.98566 0.95954 0.99441 1.22002 0.88588 0.95894 0.95061 1.47782 1.25354 1.09793 1.50942 1.17735 0.81734 0.80518 0.79255 1.90938 1.40285 1.65161 1.50672 1.86290 1.51343 1.21026 1.69813 1.22552 0.88696 0.93755 0.89818 1.21947 0.98962 1.01983 0.94472 1.21485 0.98430 0.96410 0.98991 1.21595 1.01263 0.97303 0.95825 1.21492 0.97773 1.00859 0.95175 1.21598 0.99188 0.94611 0.99917 1.22847 1.02450 0.73279 0.99892 0.92519 0.91514 0.91393 0.92447 0.92680 0.89715 0.91249 0.91111 0.91580 0.91505 0.91795 0.91778 0.91579 0.91210 0.91045 0.90914 0.92607 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.12 12.30 55.43 0.68 -24.44 16 2 C 0.06 1.74 5.35 -17.82 -0.10 1.64 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -13.64 8.52 -34.44 -0.29 -13.94 16 8 H 0.06 1.59 7.78 -52.48 -0.41 1.18 16 9 C 0.05 1.13 2.90 -89.62 -0.26 0.87 16 10 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 11 C -0.13 -2.49 6.39 -24.90 -0.16 -2.65 16 12 C 0.11 1.96 6.89 -3.06 -0.02 1.94 16 13 N -0.60 -12.97 3.33 -176.30 -0.59 -13.56 16 14 C 0.65 14.09 8.59 54.05 0.46 14.55 16 15 O -0.58 -14.08 15.86 -19.28 -0.31 -14.39 16 16 O -0.37 -6.64 9.48 -40.33 -0.38 -7.02 16 17 C 0.11 1.57 2.46 -26.73 -0.07 1.50 16 18 C -0.14 -1.74 5.56 -26.73 -0.15 -1.89 16 19 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 20 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 21 C -0.12 -1.01 5.92 -26.76 -0.16 -1.17 16 22 C -0.12 -1.28 5.58 -26.76 -0.15 -1.43 16 23 C 0.13 3.30 5.78 -2.53 -0.01 3.29 16 24 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.37 7.16 -51.93 -0.37 1.00 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.41 8.03 -51.93 -0.42 0.99 16 41 H 0.08 2.31 7.48 -51.93 -0.39 1.92 16 LS Contribution 328.39 15.07 4.95 4.95 Total: -1.00 -29.77 328.39 -8.94 -38.71 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.06 Total: -0.21 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.22 Total: 0.23 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.10 Total: -38.00 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.69 Total: -21.41 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.77 -8.94 -38.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704269591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.717 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds