Wall clock time and date at job start Mon Mar 30 2020 06:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99607 * 2 1 4 4 H 1.48506 * 109.47161 * 239.99686 * 3 2 1 5 5 H 1.48494 * 109.47566 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47144 * 120.00422 * 3 2 1 7 7 C 1.37880 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99311 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00182 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.88722 * 59.30051 * 9 7 2 11 11 C 1.55154 * 111.00241 * 183.17982 * 9 7 2 12 12 C 1.54327 * 102.94290 * 153.61555 * 11 9 7 13 13 N 1.47029 * 107.26790 * 337.80696 * 12 11 9 14 14 C 1.34773 * 125.64745 * 178.89726 * 13 12 11 15 15 O 1.21506 * 120.00231 * 180.02562 * 14 13 12 16 16 O 1.34641 * 120.00000 * 0.02562 * 14 13 12 17 17 C 1.45208 * 116.99904 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46795 * 269.99810 * 17 16 14 19 19 C 1.53003 * 109.47139 * 180.02562 * 18 17 16 20 20 C 1.53002 * 109.46760 * 59.99623 * 19 18 17 21 21 C 1.52993 * 109.47525 * 300.00223 * 20 19 18 22 22 C 1.52997 * 109.46812 * 149.99980 * 17 16 14 23 23 C 1.47418 * 108.70495 * 358.93814 * 13 12 11 24 24 H 0.96995 * 120.00371 * 359.97438 * 1 2 3 25 25 H 1.09004 * 110.72212 * 271.97577 * 11 9 7 26 26 H 1.09001 * 110.72124 * 35.25696 * 11 9 7 27 27 H 1.08993 * 109.88730 * 97.22288 * 12 11 9 28 28 H 1.09003 * 109.88555 * 218.39558 * 12 11 9 29 29 H 1.08994 * 109.47059 * 29.99433 * 17 16 14 30 30 H 1.09001 * 109.47180 * 300.00316 * 18 17 16 31 31 H 1.09002 * 109.47267 * 59.99975 * 18 17 16 32 32 H 1.08998 * 109.46665 * 300.00114 * 19 18 17 33 33 H 1.08992 * 109.47454 * 180.02562 * 19 18 17 34 34 H 1.09006 * 109.46398 * 179.97438 * 20 19 18 35 35 H 1.08998 * 109.47131 * 60.00776 * 20 19 18 36 36 H 1.09001 * 109.47112 * 299.99936 * 21 20 19 37 37 H 1.09002 * 109.47191 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47475 * 299.99762 * 22 17 16 39 39 H 1.08998 * 109.47387 * 60.00175 * 22 17 16 40 40 H 1.08995 * 110.37279 * 265.29528 * 23 13 12 41 41 H 1.08997 * 110.36990 * 142.96726 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6062 -2.5756 -0.8760 11 6 2.2256 -3.7038 0.0792 12 6 1.3644 -4.8021 0.7377 13 7 0.2767 -4.1282 1.4620 14 6 -0.7045 -4.7411 2.1533 15 8 -1.5556 -4.0807 2.7153 16 8 -0.7417 -6.0853 2.2211 17 6 -1.8273 -6.6771 2.9825 18 6 -1.3943 -6.8474 4.4401 19 6 -2.5379 -7.4716 5.2423 20 6 -2.8886 -8.8386 4.6513 21 6 -3.3216 -8.6683 3.1938 22 6 -2.1785 -8.0440 2.3918 23 6 0.4366 -2.6710 1.3059 24 1 -0.4850 0.8400 0.0004 25 1 2.5437 -4.0092 -0.9177 26 1 3.0864 -3.4630 0.7030 27 1 0.9495 -5.4571 -0.0283 28 1 1.9708 -5.3808 1.4345 29 1 -2.7003 -6.0262 2.9366 30 1 -0.5211 -7.4983 4.4860 31 1 -1.1440 -5.8736 4.8609 32 1 -3.4112 -6.8210 5.1963 33 1 -2.2296 -7.5925 6.2807 34 1 -3.7030 -9.2834 5.2231 35 1 -2.0153 -9.4892 4.6972 36 1 -4.1950 -8.0178 3.1479 37 1 -3.5718 -9.6421 2.7729 38 1 -2.4870 -7.9228 1.3534 39 1 -1.3055 -8.6950 2.4378 40 1 0.9848 -2.2567 2.1520 41 1 -0.5372 -2.1904 1.2118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704269591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:13 Heat of formation + Delta-G solvation = -123.959576 kcal Electronic energy + Delta-G solvation = -20852.126476 eV Core-core repulsion = 17730.047506 eV Total energy + Delta-G solvation = -3122.078970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.70597 -39.74539 -38.48191 -36.88026 -34.98459 -32.53276 -31.80338 -30.84239 -29.83973 -27.07510 -24.73643 -23.64508 -23.24950 -21.67357 -21.29396 -20.81188 -19.02838 -18.55790 -18.04132 -17.41230 -16.57899 -16.32198 -15.99559 -15.28213 -15.14224 -14.90252 -14.44548 -14.26973 -14.02312 -13.90022 -13.74459 -13.46684 -13.25834 -13.19711 -12.76898 -12.49868 -12.38963 -12.36870 -12.12147 -11.96498 -11.78502 -11.61501 -11.49697 -11.38855 -11.18037 -11.07233 -10.91746 -10.59414 -9.69119 -8.17661 -6.30349 1.09624 1.45445 1.46956 1.54531 1.71406 2.42777 2.97603 3.15253 3.64458 3.66817 3.92858 3.96013 4.10605 4.18318 4.20497 4.28139 4.35083 4.44925 4.48448 4.58683 4.61205 4.69759 4.84893 4.87954 4.94994 5.03100 5.08823 5.14713 5.16277 5.18467 5.24691 5.27999 5.30081 5.36619 5.46569 5.53466 5.66263 5.84097 6.24159 6.53638 6.81147 7.22097 7.40064 8.91368 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.041397 B = 0.003857 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.214810 B = 7257.019197 C = 7549.657822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.072 0.928 9 C 0.039 3.961 10 H 0.014 0.986 11 C -0.116 4.116 12 C 0.108 3.892 13 N -0.605 5.605 14 C 0.653 3.347 15 O -0.618 6.618 16 O -0.361 6.361 17 C 0.096 3.904 18 C -0.133 4.133 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.113 4.113 22 C -0.109 4.109 23 C 0.150 3.850 24 H 0.262 0.738 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.041 0.959 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 -18.915 6.220 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.090 0.910 9 C 0.019 3.981 10 H 0.032 0.968 11 C -0.153 4.153 12 C -0.013 4.013 13 N -0.345 5.345 14 C 0.408 3.592 15 O -0.511 6.511 16 O -0.275 6.275 17 C 0.041 3.959 18 C -0.170 4.170 19 C -0.151 4.151 20 C -0.155 4.155 21 C -0.150 4.150 22 C -0.146 4.146 23 C 0.030 3.970 24 H 0.071 0.929 25 H 0.110 0.890 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.060 0.940 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.320 -18.719 6.453 19.935 hybrid contribution -0.062 1.629 0.051 1.631 sum -2.382 -17.090 6.504 18.440 Atomic orbital electron populations 1.70096 1.07657 1.27789 1.50493 1.25921 0.95589 1.03121 0.94244 0.85546 0.78217 0.78367 0.79180 1.18920 1.21597 1.19383 1.21351 0.93543 0.90545 1.51330 0.90992 1.19791 0.93158 0.93979 0.91148 0.96779 1.22680 0.97643 0.93737 1.01288 1.22207 0.87677 0.95612 0.95813 1.47754 1.26430 1.08967 1.51367 1.17822 0.81117 0.81594 0.78666 1.90906 1.41689 1.66353 1.52104 1.86297 1.52563 1.18468 1.70195 1.23016 0.86898 0.94843 0.91141 1.21943 1.00730 1.00953 0.93418 1.21507 0.96826 0.97267 0.99483 1.21597 1.02468 0.96083 0.95381 1.21533 0.96438 1.01678 0.95386 1.21647 1.00665 0.92372 0.99965 1.22359 0.99924 0.75067 0.99699 0.92875 0.88992 0.90569 0.90540 0.89891 0.92167 0.89962 0.94134 0.92521 0.90011 0.89821 0.90642 0.92127 0.88731 0.91312 0.89603 0.94043 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.28 12.30 21.45 0.26 -54.01 16 2 C 0.01 0.60 5.35 84.65 0.45 1.05 16 3 Si 0.96 42.80 29.54 68.60 2.03 44.83 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.53 -27.94 8.52 25.60 0.22 -27.73 16 8 H 0.07 3.58 7.78 -2.91 -0.02 3.56 16 9 C 0.04 1.90 2.90 -10.15 -0.03 1.87 16 10 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 11 C -0.12 -4.25 6.39 31.78 0.20 -4.05 16 12 C 0.11 3.72 6.89 86.73 0.60 4.32 16 13 N -0.61 -26.50 3.33 -942.10 -3.13 -29.63 16 14 C 0.65 28.83 8.59 129.79 1.12 29.94 16 15 O -0.62 -31.52 15.86 19.82 0.31 -31.21 16 16 O -0.36 -12.86 9.48 -55.50 -0.53 -13.39 16 17 C 0.10 2.78 2.46 30.59 0.08 2.86 16 18 C -0.13 -3.33 5.56 30.60 0.17 -3.16 16 19 C -0.11 -2.09 5.92 30.60 0.18 -1.91 16 20 C -0.12 -1.59 5.92 30.59 0.18 -1.41 16 21 C -0.11 -1.68 5.92 30.58 0.18 -1.50 16 22 C -0.11 -2.21 5.58 30.58 0.17 -2.04 16 23 C 0.15 7.68 5.78 86.86 0.50 8.18 16 24 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 25 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 26 H 0.08 2.68 8.03 -2.39 -0.02 2.66 16 27 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.06 2.04 7.16 -2.39 -0.02 2.02 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 34 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.04 2.19 8.03 -2.39 -0.02 2.17 16 41 H 0.04 2.41 7.48 -2.39 -0.02 2.39 16 Total: -1.00 -67.25 328.39 3.95 -63.31 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.98 Total: 13.67 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 4.02 Total: 6.43 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -2.87 Total: -83.64 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -0.21 Total: -44.60 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -67.25 3.95 -63.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704269591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.652 kcal (2) G-P(sol) polarization free energy of solvation -67.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds