Wall clock time and date at job start Mon Mar 30 2020 06:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99870 * 2 1 4 4 H 1.48500 * 109.46981 * 240.00207 * 3 2 1 5 5 H 1.48500 * 109.47011 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47064 * 119.99694 * 3 2 1 7 7 C 1.37881 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99658 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00021 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47149 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99646 * 90.00255 * 10 9 7 12 12 O 1.21513 * 120.00524 * 354.95515 * 11 10 9 13 13 O 1.34640 * 119.99580 * 174.95666 * 11 10 9 14 14 C 1.45206 * 116.99852 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47181 * 270.00356 * 14 13 11 16 16 C 1.53006 * 109.47051 * 180.02562 * 15 14 13 17 17 C 1.52995 * 109.47103 * 59.99848 * 16 15 14 18 18 C 1.53005 * 109.47356 * 299.99894 * 17 16 15 19 19 C 1.52995 * 109.46848 * 150.00281 * 14 13 11 20 20 C 1.46497 * 119.99934 * 270.00234 * 10 9 7 21 21 C 1.52999 * 117.49991 * 13.62108 * 20 10 9 22 22 C 1.53002 * 60.00166 * 252.51298 * 21 20 10 23 23 H 0.96998 * 120.00675 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47215 * 60.00322 * 9 7 2 25 25 H 1.09003 * 109.47312 * 300.00401 * 9 7 2 26 26 H 1.08993 * 109.46883 * 30.00553 * 14 13 11 27 27 H 1.09001 * 109.47222 * 299.99626 * 15 14 13 28 28 H 1.08998 * 109.47430 * 59.99833 * 15 14 13 29 29 H 1.09001 * 109.46612 * 299.99767 * 16 15 14 30 30 H 1.08998 * 109.47005 * 180.02562 * 16 15 14 31 31 H 1.09002 * 109.47009 * 180.02562 * 17 16 15 32 32 H 1.08997 * 109.47805 * 60.00110 * 17 16 15 33 33 H 1.09001 * 109.47280 * 300.00645 * 18 17 16 34 34 H 1.08990 * 109.47304 * 179.97438 * 18 17 16 35 35 H 1.09007 * 109.47534 * 299.99888 * 19 14 13 36 36 H 1.08997 * 109.47805 * 60.00112 * 19 14 13 37 37 H 1.09000 * 115.54984 * 159.33229 * 20 10 9 38 38 H 1.09002 * 117.50098 * 359.97438 * 21 20 10 39 39 H 1.09000 * 117.49935 * 145.02224 * 21 20 10 40 40 H 1.09007 * 117.49755 * 252.51542 * 22 21 20 41 41 H 1.08995 * 117.52359 * 107.48208 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.6411 -4.1248 1.1667 12 8 2.3188 -3.6056 2.2170 13 8 3.4356 -5.2118 1.1689 14 6 3.8696 -5.7083 2.4625 15 6 5.1855 -5.0324 2.8530 16 6 5.6431 -5.5562 4.2158 17 6 5.8511 -7.0699 4.1368 18 6 4.5352 -7.7458 3.7464 19 6 4.0775 -7.2221 2.3841 20 6 2.6793 -4.1693 -1.2692 21 6 2.4095 -3.3619 -2.5405 22 6 1.6257 -4.6478 -2.2703 23 1 -0.4851 0.8400 -0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8897 26 1 3.1099 -5.4842 3.2112 27 1 5.9453 -5.2566 2.1042 28 1 5.0374 -3.9540 2.9088 29 1 4.8835 -5.3323 4.9647 30 1 6.5804 -5.0743 4.4941 31 1 6.1767 -7.4430 5.1078 32 1 6.6107 -7.2937 3.3878 33 1 3.7755 -7.5220 4.4953 34 1 4.6835 -8.8241 3.6896 35 1 3.1399 -7.7037 2.1059 36 1 4.8372 -7.4463 1.6354 37 1 3.6137 -4.7281 -1.2163 38 1 1.8774 -2.4166 -2.4330 39 1 3.1665 -3.3892 -3.3242 40 1 1.8673 -5.5212 -2.8762 41 1 0.5785 -4.5489 -1.9848 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704339428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:16 Heat of formation + Delta-G solvation = -92.383612 kcal Electronic energy + Delta-G solvation = -21142.229106 eV Core-core repulsion = 18021.519373 eV Total energy + Delta-G solvation = -3120.709734 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.64740 -39.61875 -38.38682 -36.89587 -35.23791 -33.92400 -31.78238 -31.06518 -29.39570 -25.47186 -24.04466 -23.59144 -23.18608 -22.92078 -21.07920 -20.74424 -19.19703 -18.62083 -18.04400 -17.04982 -16.80486 -16.39134 -15.87589 -15.47026 -15.22087 -15.04950 -14.70596 -14.44324 -13.96492 -13.72222 -13.55779 -13.37038 -13.20893 -12.86946 -12.64032 -12.44795 -12.26089 -12.22543 -12.16324 -12.09487 -11.90193 -11.80572 -11.52121 -11.49370 -11.36919 -11.12729 -10.87460 -10.65608 -9.38200 -8.24030 -6.38010 1.25362 1.36608 1.40164 1.48218 1.81175 2.36982 2.90900 3.06116 3.10625 3.67195 3.70116 3.89459 3.97038 4.08209 4.15694 4.20950 4.21332 4.24221 4.47339 4.49914 4.61745 4.72034 4.83877 4.88393 4.91926 4.99740 5.05503 5.07198 5.16474 5.18569 5.21907 5.28485 5.32067 5.39420 5.42223 5.48667 5.58751 5.73725 6.00351 6.56749 6.68503 7.26149 7.44710 8.82950 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.005334 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.796701 B = 5248.251735 C = 6065.797447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.049 0.951 9 C 0.279 3.721 10 N -0.559 5.559 11 C 0.641 3.359 12 O -0.612 6.612 13 O -0.362 6.362 14 C 0.097 3.903 15 C -0.134 4.134 16 C -0.113 4.113 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.106 4.106 20 C 0.058 3.942 21 C -0.176 4.176 22 C -0.177 4.177 23 H 0.269 0.731 24 H 0.038 0.962 25 H -0.001 1.001 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.144 0.856 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.135 0.865 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.353 -16.145 0.999 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.206 1.206 7 C -0.576 4.576 8 H 0.067 0.933 9 C 0.159 3.841 10 N -0.295 5.295 11 C 0.396 3.604 12 O -0.504 6.504 13 O -0.276 6.276 14 C 0.041 3.959 15 C -0.172 4.172 16 C -0.151 4.151 17 C -0.154 4.154 18 C -0.150 4.150 19 C -0.144 4.144 20 C -0.046 4.046 21 C -0.214 4.214 22 C -0.215 4.215 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.017 0.983 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.162 0.838 38 H 0.100 0.900 39 H 0.146 0.854 40 H 0.153 0.847 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.121 -15.918 1.358 19.465 hybrid contribution -0.270 1.522 0.292 1.573 sum 10.852 -14.395 1.651 18.103 Atomic orbital electron populations 1.70023 1.07405 1.28344 1.50749 1.25772 0.95766 1.02731 0.94334 0.85505 0.78383 0.78234 0.78934 1.18437 1.20068 1.20600 1.21521 0.93013 0.91549 1.51476 0.93295 1.18811 0.86789 0.82219 0.96249 1.46670 1.45768 1.34235 1.02847 1.18176 0.78176 0.79804 0.84290 1.90908 1.63379 1.63937 1.32215 1.86271 1.62412 1.42034 1.36925 1.22953 0.95908 0.95771 0.81228 1.21939 0.96497 0.98893 0.99822 1.21503 1.01601 0.97481 0.94482 1.21591 0.97586 0.93264 1.02975 1.21538 0.97566 1.01299 0.94608 1.21628 1.02993 0.89581 1.00175 1.21909 0.99702 1.02928 0.80063 1.23356 1.04007 0.96100 0.97947 1.23427 0.96873 0.99015 1.02192 0.92248 0.94384 0.98275 0.92450 0.90014 0.94754 0.92660 0.90237 0.89792 0.90597 0.92189 0.88555 0.91123 0.89577 0.83820 0.90044 0.85431 0.84734 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 2 C 0.01 0.77 5.46 84.66 0.46 1.24 16 3 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 7 C -0.54 -31.54 8.91 25.60 0.23 -31.31 16 8 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 9 C 0.28 15.50 4.39 85.63 0.38 15.87 16 10 N -0.56 -26.35 2.81 -932.38 -2.62 -28.96 16 11 C 0.64 30.69 8.36 129.79 1.08 31.77 16 12 O -0.61 -34.26 15.23 19.80 0.30 -33.95 16 13 O -0.36 -13.77 8.81 -55.49 -0.49 -14.26 16 14 C 0.10 3.03 2.46 30.59 0.08 3.11 16 15 C -0.13 -3.80 5.56 30.59 0.17 -3.63 16 16 C -0.11 -2.38 5.92 30.59 0.18 -2.20 16 17 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 18 C -0.11 -1.81 5.92 30.58 0.18 -1.63 16 19 C -0.11 -2.28 5.58 30.58 0.17 -2.11 16 20 C 0.06 2.09 6.27 44.99 0.28 2.37 16 21 C -0.18 -5.90 9.72 30.59 0.30 -5.60 16 22 C -0.18 -5.31 10.02 30.60 0.31 -5.00 16 23 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 24 H 0.04 2.11 6.25 -2.38 -0.01 2.10 16 25 H 0.00 -0.05 7.49 -2.39 -0.02 -0.07 16 26 H 0.06 2.10 7.16 -2.39 -0.02 2.08 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.51 8.14 -2.38 -0.02 1.50 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.14 4.47 7.57 -2.39 -0.02 4.46 16 38 H 0.08 3.40 6.29 -2.39 -0.02 3.39 16 39 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 40 H 0.13 2.93 8.14 -2.38 -0.02 2.91 16 41 H 0.08 2.61 7.82 -2.39 -0.02 2.59 16 Total: -1.00 -72.51 331.91 4.50 -68.01 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.99 Total: 16.07 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 4.00 Total: 1.30 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -2.33 Total: -84.62 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -0.19 Total: -48.21 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -72.51 4.50 -68.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704339428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.372 kcal (2) G-P(sol) polarization free energy of solvation -72.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds