Wall clock time and date at job start Mon Mar 30 2020 07:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99491 * 2 1 4 4 H 1.48500 * 109.46735 * 269.99692 * 3 2 1 5 5 H 1.48492 * 109.47197 * 29.99961 * 3 2 1 6 6 H 1.48504 * 109.46645 * 150.00168 * 3 2 1 7 7 C 1.37870 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00415 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99590 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.46898 * 174.22370 * 9 7 2 11 11 C 1.46894 * 110.99847 * 159.86347 * 10 9 7 12 12 C 1.53001 * 109.46865 * 189.99743 * 11 10 9 13 13 O 1.42904 * 109.47317 * 64.99900 * 12 11 10 14 14 C 1.42901 * 114.00216 * 179.97438 * 13 12 11 15 15 C 1.52994 * 109.47161 * 180.02562 * 14 13 12 16 16 C 1.54966 * 110.92313 * 71.53953 * 15 14 13 17 17 C 1.54271 * 104.15551 * 156.29581 * 16 15 14 18 18 C 1.53870 * 106.64501 * 336.44963 * 17 16 15 19 19 C 1.54267 * 106.59413 * 359.97290 * 18 17 16 20 20 C 1.46907 * 111.00053 * 283.81540 * 10 9 7 21 21 C 1.52992 * 117.50028 * 137.99469 * 20 10 9 22 22 C 1.53003 * 117.49870 * 69.33359 * 20 10 9 23 23 H 0.96997 * 120.00215 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46997 * 54.22407 * 9 7 2 25 25 H 1.08994 * 109.47197 * 294.21740 * 9 7 2 26 26 H 1.08998 * 109.47529 * 69.99870 * 11 10 9 27 27 H 1.09001 * 109.47328 * 309.99783 * 11 10 9 28 28 H 1.08997 * 109.47680 * 304.99465 * 12 11 10 29 29 H 1.09007 * 109.47036 * 184.99977 * 12 11 10 30 30 H 1.09002 * 109.46747 * 60.00299 * 14 13 12 31 31 H 1.09001 * 109.47067 * 300.00162 * 14 13 12 32 32 H 1.09007 * 110.67302 * 308.23725 * 15 14 13 33 33 H 1.09000 * 110.47534 * 37.64491 * 16 15 14 34 34 H 1.08994 * 110.53387 * 274.97461 * 16 15 14 35 35 H 1.09001 * 110.02847 * 217.13687 * 17 16 15 36 36 H 1.09002 * 110.03310 * 95.76278 * 17 16 15 37 37 H 1.08993 * 110.03431 * 119.25768 * 18 17 16 38 38 H 1.09000 * 110.02914 * 240.64551 * 18 17 16 39 39 H 1.09006 * 110.48334 * 142.29278 * 19 18 17 40 40 H 1.09004 * 110.49049 * 264.79856 * 19 18 17 41 41 H 1.09001 * 115.54863 * 283.67288 * 20 10 9 42 42 H 1.09002 * 117.49772 * 0.02562 * 21 20 10 43 43 H 1.09006 * 117.49867 * 145.02156 * 21 20 10 44 44 H 1.08997 * 117.49735 * 214.98268 * 22 20 10 45 45 H 1.09005 * 117.49666 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0014 -2.5717 0.1401 11 6 5.3906 -2.6863 -0.3233 12 6 5.7831 -4.1632 -0.3980 13 8 4.9964 -4.8153 -1.3969 14 6 5.2861 -6.2064 -1.5486 15 6 4.3904 -6.7980 -2.6387 16 6 4.8234 -6.3006 -4.0411 17 6 4.2966 -7.3839 -5.0049 18 6 4.1481 -8.6738 -4.1794 19 6 4.5906 -8.3304 -2.7420 20 6 3.8687 -3.0392 1.5264 21 6 3.3684 -4.4684 1.7452 22 6 2.4545 -3.2810 2.0581 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.5925 0.8332 25 1 3.8745 -0.7730 -0.9376 26 1 6.0501 -2.1699 0.3741 27 1 5.4823 -2.2355 -1.3115 28 1 5.6072 -4.6353 0.5685 29 1 6.8390 -4.2459 -0.6558 30 1 5.1000 -6.7211 -0.6059 31 1 6.3316 -6.3311 -1.8305 32 1 3.3442 -6.5569 -2.4501 33 1 5.9094 -6.2309 -4.1024 34 1 4.3652 -5.3369 -4.2632 35 1 5.0077 -7.5395 -5.8162 36 1 3.3291 -7.0857 -5.4089 37 1 3.1085 -9.0012 -4.1819 38 1 4.7866 -9.4557 -4.5905 39 1 3.9627 -8.8469 -2.0159 40 1 5.6384 -8.5912 -2.5926 41 1 4.6100 -2.6528 2.2259 42 1 3.1382 -5.0620 0.8604 43 1 3.7805 -5.0223 2.5888 44 1 2.2657 -3.0541 3.1074 45 1 1.6226 -3.0928 1.3793 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710335339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:29 Heat of formation + Delta-G solvation = -27.602677 kcal Electronic energy + Delta-G solvation = -21058.104719 eV Core-core repulsion = 18076.037192 eV Total energy + Delta-G solvation = -2982.067527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.74615 -37.90518 -36.53609 -33.63483 -32.43255 -30.59269 -29.03641 -28.65619 -26.28917 -24.17637 -22.19155 -21.63834 -21.51791 -20.29313 -19.98303 -19.36364 -16.80248 -16.54202 -15.80715 -15.51092 -15.28508 -14.92902 -14.39227 -14.19018 -13.81687 -13.40753 -13.33634 -12.97161 -12.48055 -12.17111 -11.96295 -11.89200 -11.50871 -11.31603 -11.12061 -11.00413 -10.92729 -10.69449 -10.64416 -10.58848 -10.50945 -10.43686 -10.18030 -9.91207 -9.57266 -9.19128 -9.16148 -9.02583 -8.46699 -7.26995 -5.96549 -3.91600 3.32657 3.39894 3.41442 3.91667 4.48311 4.57966 4.58316 4.60646 4.72277 4.80530 5.22020 5.31980 5.35779 5.39714 5.47414 5.53463 5.56539 5.60907 5.62793 5.66045 5.70417 5.70665 5.78878 5.82006 5.85472 5.96322 6.02122 6.06609 6.15193 6.20774 6.22737 6.33621 6.36107 6.42338 6.47186 6.81183 6.85561 7.03334 7.23807 7.59402 7.73617 7.97573 8.19034 8.76300 9.14363 9.65606 11.16224 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020529 B = 0.004411 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.577157 B = 6346.131870 C = 6728.322436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.870 3.130 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.495 4.495 8 H 0.087 0.913 9 C 0.162 3.838 10 N -0.489 5.489 11 C 0.058 3.942 12 C 0.072 3.928 13 O -0.361 6.361 14 C 0.070 3.930 15 C -0.090 4.090 16 C -0.114 4.114 17 C -0.127 4.127 18 C -0.123 4.123 19 C -0.117 4.117 20 C 0.017 3.983 21 C -0.183 4.183 22 C -0.151 4.151 23 H 0.262 0.738 24 H -0.009 1.009 25 H 0.021 0.979 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.329 -14.598 -3.314 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.698 3.302 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.533 4.533 8 H 0.105 0.895 9 C 0.036 3.964 10 N -0.214 5.214 11 C -0.071 4.071 12 C -0.006 4.006 13 O -0.279 6.279 14 C -0.007 4.007 15 C -0.109 4.109 16 C -0.152 4.152 17 C -0.165 4.165 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.092 4.092 21 C -0.221 4.221 22 C -0.187 4.187 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.113 0.887 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.744 -14.664 -3.735 19.154 hybrid contribution 1.202 1.417 0.707 1.988 sum 12.946 -13.246 -3.028 18.768 Atomic orbital electron populations 1.69888 1.05999 1.26575 1.51831 1.24884 0.94690 0.98574 0.95274 0.86940 0.80324 0.84469 0.78458 1.20323 1.21369 1.19396 1.21111 0.88650 0.94585 1.48996 0.89548 1.20213 0.97396 0.83803 0.94966 1.61701 1.16654 1.25412 1.17600 1.22077 0.90762 0.93811 1.00456 1.22500 0.92629 0.93911 0.91517 1.88074 1.62062 1.20274 1.57501 1.22400 0.97237 0.83525 0.97545 1.22103 1.00748 0.93809 0.94199 1.22361 1.00380 0.98685 0.93759 1.22158 1.01157 0.95070 0.98070 1.22104 1.01198 0.97607 0.95176 1.22339 1.01144 0.95193 0.96836 1.22086 0.98358 0.98222 0.90511 1.23027 1.05775 0.91238 1.02031 1.23170 0.95196 0.99516 1.00865 0.92846 0.99087 0.96122 0.94708 0.90494 0.93179 0.94472 0.93927 0.94320 0.89421 0.92054 0.90923 0.92225 0.91818 0.91868 0.92139 0.91587 0.91777 0.91664 0.88669 0.90602 0.90341 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.87 21.71 27.59 -169.99 -4.69 17.02 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.50 6.38 56.52 0.36 -6.14 16 7 C -0.50 -14.03 8.37 -34.44 -0.29 -14.31 16 8 H 0.09 2.65 6.03 -52.49 -0.32 2.34 16 9 C 0.16 3.99 3.87 -4.97 -0.02 3.97 16 10 N -0.49 -10.47 4.52 -228.08 -1.03 -11.50 16 11 C 0.06 1.01 5.32 -3.83 -0.02 0.99 16 12 C 0.07 1.08 5.91 37.16 0.22 1.30 16 13 O -0.36 -5.95 10.24 -35.23 -0.36 -6.31 16 14 C 0.07 0.90 5.38 37.15 0.20 1.10 16 15 C -0.09 -1.09 3.15 -88.59 -0.28 -1.37 16 16 C -0.11 -1.33 6.24 -25.03 -0.16 -1.49 16 17 C -0.13 -1.26 6.80 -25.61 -0.17 -1.43 16 18 C -0.12 -1.12 6.80 -25.62 -0.17 -1.29 16 19 C -0.12 -1.13 6.27 -25.08 -0.16 -1.29 16 20 C 0.02 0.34 4.18 -67.71 -0.28 0.06 16 21 C -0.18 -3.16 9.17 -26.70 -0.24 -3.40 16 22 C -0.15 -3.02 9.48 -26.69 -0.25 -3.28 16 23 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 24 H -0.01 -0.22 6.64 -51.93 -0.34 -0.56 16 25 H 0.02 0.51 7.44 -51.93 -0.39 0.13 16 26 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 27 H 0.08 1.38 7.82 -51.93 -0.41 0.97 16 28 H 0.05 0.74 6.29 -51.93 -0.33 0.42 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.44 8.00 -51.93 -0.42 0.03 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 0.68 7.95 -51.93 -0.41 0.27 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.56 8.05 -51.93 -0.42 0.14 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.12 2.96 5.44 -51.93 -0.28 2.68 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -30.42 349.24 -10.17 -40.59 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.40 Total: 0.47 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -1.73 Total: -18.61 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.26 Total: -38.44 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.36 Total: -6.31 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.69 Total: 17.02 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.42 -10.17 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710335339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.992 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds