Wall clock time and date at job start Mon Mar 30 2020 07:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99491 * 2 1 4 4 H 1.48500 * 109.46735 * 269.99692 * 3 2 1 5 5 H 1.48492 * 109.47197 * 29.99961 * 3 2 1 6 6 H 1.48504 * 109.46645 * 150.00168 * 3 2 1 7 7 C 1.37870 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00415 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99590 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.46898 * 174.22370 * 9 7 2 11 11 C 1.46894 * 110.99847 * 159.86347 * 10 9 7 12 12 C 1.53001 * 109.46865 * 189.99743 * 11 10 9 13 13 O 1.42904 * 109.47317 * 64.99900 * 12 11 10 14 14 C 1.42901 * 114.00216 * 179.97438 * 13 12 11 15 15 C 1.52994 * 109.47161 * 180.02562 * 14 13 12 16 16 C 1.54966 * 110.92313 * 71.53953 * 15 14 13 17 17 C 1.54271 * 104.15551 * 156.29581 * 16 15 14 18 18 C 1.53870 * 106.64501 * 336.44963 * 17 16 15 19 19 C 1.54267 * 106.59413 * 359.97290 * 18 17 16 20 20 C 1.46907 * 111.00053 * 283.81540 * 10 9 7 21 21 C 1.52992 * 117.50028 * 137.99469 * 20 10 9 22 22 C 1.53003 * 117.49870 * 69.33359 * 20 10 9 23 23 H 0.96997 * 120.00215 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46997 * 54.22407 * 9 7 2 25 25 H 1.08994 * 109.47197 * 294.21740 * 9 7 2 26 26 H 1.08998 * 109.47529 * 69.99870 * 11 10 9 27 27 H 1.09001 * 109.47328 * 309.99783 * 11 10 9 28 28 H 1.08997 * 109.47680 * 304.99465 * 12 11 10 29 29 H 1.09007 * 109.47036 * 184.99977 * 12 11 10 30 30 H 1.09002 * 109.46747 * 60.00299 * 14 13 12 31 31 H 1.09001 * 109.47067 * 300.00162 * 14 13 12 32 32 H 1.09007 * 110.67302 * 308.23725 * 15 14 13 33 33 H 1.09000 * 110.47534 * 37.64491 * 16 15 14 34 34 H 1.08994 * 110.53387 * 274.97461 * 16 15 14 35 35 H 1.09001 * 110.02847 * 217.13687 * 17 16 15 36 36 H 1.09002 * 110.03310 * 95.76278 * 17 16 15 37 37 H 1.08993 * 110.03431 * 119.25768 * 18 17 16 38 38 H 1.09000 * 110.02914 * 240.64551 * 18 17 16 39 39 H 1.09006 * 110.48334 * 142.29278 * 19 18 17 40 40 H 1.09004 * 110.49049 * 264.79856 * 19 18 17 41 41 H 1.09001 * 115.54863 * 283.67288 * 20 10 9 42 42 H 1.09002 * 117.49772 * 0.02562 * 21 20 10 43 43 H 1.09006 * 117.49867 * 145.02156 * 21 20 10 44 44 H 1.08997 * 117.49735 * 214.98268 * 22 20 10 45 45 H 1.09005 * 117.49666 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0014 -2.5717 0.1401 11 6 5.3906 -2.6863 -0.3233 12 6 5.7831 -4.1632 -0.3980 13 8 4.9964 -4.8153 -1.3969 14 6 5.2861 -6.2064 -1.5486 15 6 4.3904 -6.7980 -2.6387 16 6 4.8234 -6.3006 -4.0411 17 6 4.2966 -7.3839 -5.0049 18 6 4.1481 -8.6738 -4.1794 19 6 4.5906 -8.3304 -2.7420 20 6 3.8687 -3.0392 1.5264 21 6 3.3684 -4.4684 1.7452 22 6 2.4545 -3.2810 2.0581 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.5925 0.8332 25 1 3.8745 -0.7730 -0.9376 26 1 6.0501 -2.1699 0.3741 27 1 5.4823 -2.2355 -1.3115 28 1 5.6072 -4.6353 0.5685 29 1 6.8390 -4.2459 -0.6558 30 1 5.1000 -6.7211 -0.6059 31 1 6.3316 -6.3311 -1.8305 32 1 3.3442 -6.5569 -2.4501 33 1 5.9094 -6.2309 -4.1024 34 1 4.3652 -5.3369 -4.2632 35 1 5.0077 -7.5395 -5.8162 36 1 3.3291 -7.0857 -5.4089 37 1 3.1085 -9.0012 -4.1819 38 1 4.7866 -9.4557 -4.5905 39 1 3.9627 -8.8469 -2.0159 40 1 5.6384 -8.5912 -2.5926 41 1 4.6100 -2.6528 2.2259 42 1 3.1382 -5.0620 0.8604 43 1 3.7805 -5.0223 2.5888 44 1 2.2657 -3.0541 3.1074 45 1 1.6226 -3.0928 1.3793 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710335339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:28 Heat of formation + Delta-G solvation = -46.037854 kcal Electronic energy + Delta-G solvation = -21058.904129 eV Core-core repulsion = 18076.037192 eV Total energy + Delta-G solvation = -2982.866936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.88814 -39.19945 -37.70469 -35.32093 -34.44452 -31.81444 -30.46725 -29.50762 -28.01268 -25.14174 -23.82484 -23.31670 -23.05274 -21.13659 -20.99481 -20.84089 -18.89533 -17.64469 -16.99858 -16.86559 -16.50292 -16.09563 -15.92167 -15.79596 -15.39212 -14.65311 -14.57950 -14.15907 -14.00195 -13.84712 -13.38024 -13.23745 -13.08966 -12.65311 -12.41975 -12.20897 -12.11529 -11.94829 -11.92300 -11.89982 -11.72469 -11.49158 -11.42647 -11.25896 -11.22963 -11.05043 -10.73539 -10.65946 -10.30248 -8.91068 -8.20595 -6.20896 1.35058 1.35897 1.45815 2.37755 2.85584 3.01020 3.11548 3.24660 3.73487 3.76779 3.92265 4.16966 4.20304 4.21575 4.32955 4.38402 4.43245 4.51292 4.56873 4.61272 4.62951 4.69902 4.74777 4.79889 4.83739 4.86967 4.89168 4.91069 4.94631 5.04435 5.08460 5.11480 5.14886 5.25818 5.33485 5.36397 5.51994 5.53389 5.54579 5.64629 6.06544 6.46886 6.59238 6.74592 6.85915 7.40474 8.95508 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020529 B = 0.004411 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.577157 B = 6346.131870 C = 6728.322436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.252 1.252 7 C -0.496 4.496 8 H 0.046 0.954 9 C 0.172 3.828 10 N -0.511 5.511 11 C 0.054 3.946 12 C 0.076 3.924 13 O -0.395 6.395 14 C 0.069 3.931 15 C -0.095 4.095 16 C -0.115 4.115 17 C -0.126 4.126 18 C -0.122 4.122 19 C -0.111 4.111 20 C 0.010 3.990 21 C -0.145 4.145 22 C -0.174 4.174 23 H 0.263 0.737 24 H -0.008 1.008 25 H 0.020 0.980 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.093 0.907 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.451 -15.577 -2.835 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.190 4.190 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.176 1.176 7 C -0.534 4.534 8 H 0.064 0.936 9 C 0.045 3.955 10 N -0.235 5.235 11 C -0.074 4.074 12 C -0.001 4.001 13 O -0.314 6.314 14 C -0.008 4.008 15 C -0.113 4.113 16 C -0.153 4.153 17 C -0.164 4.164 18 C -0.159 4.159 19 C -0.148 4.148 20 C -0.099 4.099 21 C -0.182 4.182 22 C -0.212 4.212 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.134 0.866 44 H 0.112 0.888 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.889 -15.669 -3.257 21.859 hybrid contribution 0.182 1.624 0.535 1.720 sum 15.070 -14.045 -2.722 20.780 Atomic orbital electron populations 1.70050 1.07964 1.27664 1.53612 1.25764 0.95500 1.02682 0.95036 0.85818 0.79426 0.79332 0.78939 1.19487 1.20997 1.17583 1.21327 0.90873 0.93188 1.48037 0.93583 1.19954 0.94726 0.86112 0.94702 1.61573 1.19545 1.23208 1.19200 1.22200 0.88808 0.96159 1.00220 1.22485 0.93958 0.91952 0.91658 1.88043 1.63091 1.22278 1.58018 1.22552 0.98361 0.81812 0.98026 1.22115 0.98977 0.95905 0.94337 1.22344 1.00741 0.97975 0.94192 1.22160 1.01026 0.94976 0.98236 1.22118 1.01680 0.97457 0.94693 1.22319 1.02268 0.92902 0.97315 1.22248 0.97818 0.99945 0.89909 1.22994 1.02787 0.89977 1.02489 1.22991 0.94478 1.03034 1.00663 0.92764 0.99075 0.96192 0.92700 0.91398 0.92636 0.91378 0.93240 0.92307 0.92410 0.91087 0.93650 0.90782 0.92670 0.91932 0.90256 0.91157 0.90166 0.89678 0.90000 0.86596 0.88820 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 2 C 0.01 0.38 5.47 84.65 0.46 0.85 16 3 Si 0.94 45.13 27.59 68.60 1.89 47.02 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 6 H -0.25 -11.29 6.38 99.48 0.63 -10.66 16 7 C -0.50 -29.14 8.37 25.60 0.21 -28.92 16 8 H 0.05 3.03 6.03 -2.91 -0.02 3.01 16 9 C 0.17 8.48 3.87 85.56 0.33 8.81 16 10 N -0.51 -21.68 4.52 -875.51 -3.95 -25.63 16 11 C 0.05 1.81 5.32 86.30 0.46 2.27 16 12 C 0.08 2.11 5.91 71.98 0.43 2.54 16 13 O -0.39 -12.66 10.24 -148.98 -1.52 -14.18 16 14 C 0.07 1.65 5.38 71.98 0.39 2.04 16 15 C -0.09 -2.24 3.15 -9.48 -0.03 -2.27 16 16 C -0.11 -2.65 6.24 31.70 0.20 -2.45 16 17 C -0.13 -2.38 6.80 31.32 0.21 -2.17 16 18 C -0.12 -1.98 6.80 31.32 0.21 -1.76 16 19 C -0.11 -1.90 6.27 31.67 0.20 -1.71 16 20 C 0.01 0.36 4.18 44.91 0.19 0.55 16 21 C -0.14 -4.77 9.17 30.62 0.28 -4.49 16 22 C -0.17 -7.11 9.48 30.62 0.29 -6.81 16 23 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 24 H -0.01 -0.41 6.64 -2.39 -0.02 -0.43 16 25 H 0.02 0.98 7.44 -2.39 -0.02 0.97 16 26 H 0.06 1.62 8.12 -2.39 -0.02 1.60 16 27 H 0.07 2.36 7.82 -2.39 -0.02 2.34 16 28 H 0.06 1.47 6.29 -2.39 -0.02 1.45 16 29 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.17 8.00 -2.39 -0.02 1.15 16 32 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.07 1.47 7.95 -2.39 -0.02 1.46 16 34 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.08 1.15 8.05 -2.39 -0.02 1.13 16 41 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 42 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.12 2.93 8.14 -2.38 -0.02 2.91 16 44 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 45 H 0.08 3.90 5.44 -2.38 -0.01 3.89 16 Total: -1.00 -68.70 349.24 1.40 -67.30 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.85 Total: 19.33 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 3.83 Total: -33.54 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -3.65 Total: -85.94 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -1.52 Total: -14.18 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.89 Total: 47.02 kcal Total: -68.70 1.40 -67.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710335339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.265 kcal (2) G-P(sol) polarization free energy of solvation -68.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds