Wall clock time and date at job start Mon Mar 30 2020 06:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00133 * 2 1 4 4 H 1.48498 * 109.47360 * 269.99993 * 3 2 1 5 5 H 1.48499 * 109.47389 * 30.00032 * 3 2 1 6 6 H 1.48502 * 109.46841 * 150.00062 * 3 2 1 7 7 C 1.37877 * 119.99497 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99967 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99859 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47227 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47150 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47150 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47161 * 179.97438 * 12 11 10 14 14 C 1.46906 * 111.00284 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47436 * 180.02562 * 14 13 12 16 16 H 1.08998 * 110.38068 * 57.78761 * 15 14 13 17 17 C 1.54542 * 110.33391 * 180.02562 * 15 14 13 18 18 C 1.54716 * 104.07435 * 142.53902 * 17 15 14 19 19 C 1.53556 * 103.75331 * 359.30526 * 18 17 15 20 20 C 1.52804 * 115.48940 * 207.49240 * 19 18 17 21 21 C 1.53961 * 86.79558 * 217.69103 * 20 19 18 22 22 C 1.52824 * 115.45699 * 106.78747 * 19 18 17 23 23 O 1.43341 * 106.12968 * 337.17275 * 19 18 17 24 24 H 0.97009 * 119.99717 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47133 * 60.00006 * 9 7 2 26 26 H 1.09001 * 109.47489 * 299.99936 * 9 7 2 27 27 H 1.08998 * 109.47146 * 59.99907 * 10 9 7 28 28 H 1.08997 * 109.47039 * 299.99895 * 10 9 7 29 29 H 1.08998 * 109.47404 * 59.99781 * 11 10 9 30 30 H 1.09007 * 109.47085 * 299.99265 * 11 10 9 31 31 H 1.08998 * 109.47146 * 59.99623 * 12 11 10 32 32 H 1.08997 * 109.47039 * 299.99611 * 12 11 10 33 33 H 1.00901 * 111.00794 * 303.95718 * 13 12 11 34 34 H 1.08992 * 109.46987 * 59.99691 * 14 13 12 35 35 H 1.09006 * 109.46717 * 300.00261 * 14 13 12 36 36 H 1.09001 * 110.50588 * 23.89040 * 17 15 14 37 37 H 1.09001 * 110.50524 * 261.18905 * 17 15 14 38 38 H 1.08998 * 110.56997 * 240.74350 * 18 17 15 39 39 H 1.08997 * 110.57121 * 117.87276 * 18 17 15 40 40 H 1.09003 * 113.66134 * 332.17328 * 20 19 18 41 41 H 1.09002 * 113.65735 * 103.21362 * 20 19 18 42 42 H 1.08994 * 113.58740 * 270.12147 * 21 20 19 43 43 H 1.08998 * 113.58335 * 139.30327 * 21 20 19 44 44 H 1.08994 * 113.66175 * 256.81337 * 22 19 18 45 45 H 1.08998 * 113.66058 * 27.86565 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4643 -2.1294 -0.0014 9 6 3.5114 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0023 11 6 5.5513 -2.6368 -0.0022 12 6 6.0613 -4.0793 -0.0028 13 7 7.5302 -4.0794 -0.0033 14 6 8.0567 -5.4509 -0.0032 15 6 9.5861 -5.4102 -0.0032 16 1 9.9510 -4.8555 0.8613 17 6 10.1615 -6.8445 -0.0037 18 6 11.4072 -6.7498 -0.9164 19 6 11.4195 -5.2816 -1.3662 20 6 12.0785 -5.0136 -2.7185 21 6 12.6296 -3.7178 -2.0959 22 6 12.4970 -4.4074 -0.7258 23 8 10.0728 -4.8109 -1.2261 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6806 0.8888 26 1 3.8745 -0.6802 -0.8911 27 1 3.6576 -3.1499 -0.8924 28 1 3.6583 -3.1511 0.8875 29 1 5.9147 -2.1237 0.8881 30 1 5.9147 -2.1223 -0.8919 31 1 5.6979 -4.5928 -0.8929 32 1 5.6979 -4.5934 0.8870 33 1 7.8917 -3.5531 -0.7846 34 1 7.7068 -5.9744 -0.8929 35 1 7.7074 -5.9740 0.8871 36 1 9.4373 -7.5463 -0.4175 37 1 10.4488 -7.1410 1.0051 38 1 11.3037 -7.4125 -1.7755 39 1 12.3116 -6.9861 -0.3558 40 1 12.8513 -5.7367 -2.9795 41 1 11.3665 -4.8427 -3.5259 42 1 11.9686 -2.8598 -2.2181 43 1 13.6602 -3.5025 -2.3778 44 1 12.1193 -3.7521 0.0590 45 1 13.3875 -4.9599 -0.4261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711436856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:34 Heat of formation + Delta-G solvation = -49.517466 kcal Electronic energy + Delta-G solvation = -20041.834527 eV Core-core repulsion = 17058.816704 eV Total energy + Delta-G solvation = -2983.017824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.84681 -37.37542 -36.04604 -34.08464 -32.54333 -32.09215 -29.87566 -27.83031 -26.15887 -25.05268 -23.59846 -22.08419 -21.57528 -20.91391 -19.94009 -19.60730 -16.90965 -16.61077 -16.23441 -15.82836 -15.41609 -15.14632 -14.46795 -14.40311 -14.10512 -13.80057 -13.32796 -13.18182 -12.74345 -12.59825 -12.40349 -12.27746 -11.98560 -11.96125 -11.64255 -11.39297 -11.28004 -11.09131 -10.97657 -10.75515 -10.70948 -10.52895 -10.45261 -9.82865 -9.80419 -9.62331 -9.42428 -9.09850 -8.48175 -8.38516 -5.98981 -3.96296 3.35527 3.37509 3.42442 3.47845 4.05531 4.12889 4.18442 4.42713 4.47823 4.50907 4.64794 4.76627 4.81571 4.96700 5.13358 5.14986 5.28555 5.34845 5.36947 5.40876 5.44588 5.46671 5.51488 5.56657 5.59628 5.65434 5.73025 5.80813 5.88386 5.94172 6.00133 6.10291 6.17732 6.44003 6.71954 6.72777 6.82834 6.95095 7.13602 7.39877 7.45379 7.53424 7.86667 8.60632 9.06416 9.64228 11.14665 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032062 B = 0.002704 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.106847 B =10352.151958 C =10960.444013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.070 0.930 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.118 4.118 12 C 0.059 3.941 13 N -0.691 5.691 14 C 0.066 3.934 15 C 0.078 3.922 16 H 0.078 0.922 17 C -0.150 4.150 18 C -0.139 4.139 19 C 0.082 3.918 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.156 4.156 23 O -0.345 6.345 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.010 0.990 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.027 0.973 32 H 0.069 0.931 33 H 0.347 0.653 34 H 0.035 0.965 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.134 -14.258 -2.063 31.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.139 4.139 11 C -0.156 4.156 12 C -0.070 4.070 13 N -0.322 5.322 14 C -0.064 4.064 15 C 0.021 3.979 16 H 0.096 0.904 17 C -0.189 4.189 18 C -0.176 4.176 19 C 0.041 3.959 20 C -0.167 4.167 21 C -0.173 4.173 22 C -0.194 4.194 23 O -0.264 6.264 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.028 0.972 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.165 0.835 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 27.895 -13.931 -1.519 31.217 hybrid contribution 0.185 0.478 -0.773 0.928 sum 28.080 -13.453 -2.292 31.220 Atomic orbital electron populations 1.69929 1.06316 1.26793 1.51537 1.25054 0.94747 0.99236 0.94657 0.86751 0.80402 0.83525 0.78465 1.20362 1.21465 1.18931 1.21199 0.89727 0.94388 1.50391 0.91144 1.19572 0.96908 0.92529 0.96159 1.21413 0.91841 0.99757 1.00898 1.21666 0.97435 0.94563 1.01944 1.22055 0.86173 0.98520 1.00227 1.60495 1.08397 1.12768 1.50527 1.22017 0.91922 0.91340 1.01107 1.23136 0.94400 0.92244 0.88152 0.90417 1.22984 0.97639 0.97541 1.00714 1.22747 0.98509 0.96529 0.99848 1.22614 0.83963 0.91958 0.97325 1.22923 0.99547 0.98137 0.96074 1.22834 1.01258 0.97345 0.95895 1.23347 0.98710 0.99384 0.97959 1.88959 1.25000 1.70488 1.41929 0.92835 0.96630 0.97204 0.93085 0.92836 0.91669 0.92731 0.95456 0.91206 0.83510 0.94656 0.89856 0.90565 0.90365 0.90552 0.90455 0.89006 0.90459 0.89668 0.91387 0.90667 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.69 13.96 55.43 0.77 -27.92 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.43 27.47 -169.99 -4.67 17.76 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.52 -15.34 9.66 -34.44 -0.33 -15.67 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.36 4.04 -27.88 -0.11 -0.47 16 10 C -0.10 -2.07 5.15 -26.73 -0.14 -2.20 16 11 C -0.12 -2.00 5.47 -26.73 -0.15 -2.14 16 12 C 0.06 0.85 5.69 -3.83 -0.02 0.83 16 13 N -0.69 -9.06 6.50 -113.78 -0.74 -9.80 16 14 C 0.07 0.71 5.32 -3.82 -0.02 0.69 16 15 C 0.08 0.77 3.55 -25.92 -0.09 0.67 16 16 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.15 -1.12 6.65 -25.02 -0.17 -1.29 16 18 C -0.14 -0.97 6.48 -25.54 -0.17 -1.14 16 19 C 0.08 0.70 1.13 -90.53 -0.10 0.60 16 20 C -0.13 -0.98 7.61 -26.33 -0.20 -1.18 16 21 C -0.14 -1.03 8.09 -25.74 -0.21 -1.24 16 22 C -0.16 -1.19 7.57 -26.32 -0.20 -1.39 16 23 O -0.34 -3.87 10.67 -35.23 -0.38 -4.24 16 24 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 25 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 26 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.35 4.66 8.32 -39.29 -0.33 4.33 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.55 7.87 -51.93 -0.41 0.14 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 39 H 0.08 0.44 7.84 -51.93 -0.41 0.03 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.52 7.97 -51.93 -0.41 0.11 16 LS Contribution 354.53 15.07 5.34 5.34 Total: -1.00 -31.67 354.53 -10.34 -42.01 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.67 Total: -1.05 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -2.00 Total: -22.11 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.03 Total: -37.72 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.38 Total: -4.24 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.76 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.67 -10.34 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711436856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.503 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds