Wall clock time and date at job start Mon Mar 30 2020 06:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00133 * 2 1 4 4 H 1.48498 * 109.47360 * 269.99993 * 3 2 1 5 5 H 1.48499 * 109.47389 * 30.00032 * 3 2 1 6 6 H 1.48502 * 109.46841 * 150.00062 * 3 2 1 7 7 C 1.37877 * 119.99497 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99967 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99859 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47227 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47150 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47150 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47161 * 179.97438 * 12 11 10 14 14 C 1.46906 * 111.00284 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47436 * 180.02562 * 14 13 12 16 16 H 1.08998 * 110.38068 * 57.78761 * 15 14 13 17 17 C 1.54542 * 110.33391 * 180.02562 * 15 14 13 18 18 C 1.54716 * 104.07435 * 142.53902 * 17 15 14 19 19 C 1.53556 * 103.75331 * 359.30526 * 18 17 15 20 20 C 1.52804 * 115.48940 * 207.49240 * 19 18 17 21 21 C 1.53961 * 86.79558 * 217.69103 * 20 19 18 22 22 C 1.52824 * 115.45699 * 106.78747 * 19 18 17 23 23 O 1.43341 * 106.12968 * 337.17275 * 19 18 17 24 24 H 0.97009 * 119.99717 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47133 * 60.00006 * 9 7 2 26 26 H 1.09001 * 109.47489 * 299.99936 * 9 7 2 27 27 H 1.08998 * 109.47146 * 59.99907 * 10 9 7 28 28 H 1.08997 * 109.47039 * 299.99895 * 10 9 7 29 29 H 1.08998 * 109.47404 * 59.99781 * 11 10 9 30 30 H 1.09007 * 109.47085 * 299.99265 * 11 10 9 31 31 H 1.08998 * 109.47146 * 59.99623 * 12 11 10 32 32 H 1.08997 * 109.47039 * 299.99611 * 12 11 10 33 33 H 1.00901 * 111.00794 * 303.95718 * 13 12 11 34 34 H 1.08992 * 109.46987 * 59.99691 * 14 13 12 35 35 H 1.09006 * 109.46717 * 300.00261 * 14 13 12 36 36 H 1.09001 * 110.50588 * 23.89040 * 17 15 14 37 37 H 1.09001 * 110.50524 * 261.18905 * 17 15 14 38 38 H 1.08998 * 110.56997 * 240.74350 * 18 17 15 39 39 H 1.08997 * 110.57121 * 117.87276 * 18 17 15 40 40 H 1.09003 * 113.66134 * 332.17328 * 20 19 18 41 41 H 1.09002 * 113.65735 * 103.21362 * 20 19 18 42 42 H 1.08994 * 113.58740 * 270.12147 * 21 20 19 43 43 H 1.08998 * 113.58335 * 139.30327 * 21 20 19 44 44 H 1.08994 * 113.66175 * 256.81337 * 22 19 18 45 45 H 1.08998 * 113.66058 * 27.86565 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4643 -2.1294 -0.0014 9 6 3.5114 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0023 11 6 5.5513 -2.6368 -0.0022 12 6 6.0613 -4.0793 -0.0028 13 7 7.5302 -4.0794 -0.0033 14 6 8.0567 -5.4509 -0.0032 15 6 9.5861 -5.4102 -0.0032 16 1 9.9510 -4.8555 0.8613 17 6 10.1615 -6.8445 -0.0037 18 6 11.4072 -6.7498 -0.9164 19 6 11.4195 -5.2816 -1.3662 20 6 12.0785 -5.0136 -2.7185 21 6 12.6296 -3.7178 -2.0959 22 6 12.4970 -4.4074 -0.7258 23 8 10.0728 -4.8109 -1.2261 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6806 0.8888 26 1 3.8745 -0.6802 -0.8911 27 1 3.6576 -3.1499 -0.8924 28 1 3.6583 -3.1511 0.8875 29 1 5.9147 -2.1237 0.8881 30 1 5.9147 -2.1223 -0.8919 31 1 5.6979 -4.5928 -0.8929 32 1 5.6979 -4.5934 0.8870 33 1 7.8917 -3.5531 -0.7846 34 1 7.7068 -5.9744 -0.8929 35 1 7.7074 -5.9740 0.8871 36 1 9.4373 -7.5463 -0.4175 37 1 10.4488 -7.1410 1.0051 38 1 11.3037 -7.4125 -1.7755 39 1 12.3116 -6.9861 -0.3558 40 1 12.8513 -5.7367 -2.9795 41 1 11.3665 -4.8427 -3.5259 42 1 11.9686 -2.8598 -2.2181 43 1 13.6602 -3.5025 -2.3778 44 1 12.1193 -3.7521 0.0590 45 1 13.3875 -4.9599 -0.4261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711436856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:34 Heat of formation + Delta-G solvation = -69.216226 kcal Electronic energy + Delta-G solvation = -20042.688730 eV Core-core repulsion = 17058.816704 eV Total energy + Delta-G solvation = -2983.872026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48588 -38.29276 -37.10454 -35.70309 -34.13184 -33.11709 -31.23621 -29.09866 -26.77646 -26.30673 -24.76667 -22.90019 -22.69562 -21.97816 -21.59691 -20.22261 -18.86795 -17.66942 -17.00273 -16.65506 -16.41523 -16.23646 -15.92803 -15.51296 -15.42165 -14.77179 -14.53566 -14.31274 -13.91210 -13.73959 -13.63966 -13.30975 -13.14540 -12.95146 -12.84305 -12.58520 -12.29760 -12.23932 -12.10345 -11.86341 -11.75210 -11.69738 -11.38383 -11.37397 -11.31321 -11.13154 -11.04345 -10.76909 -10.47917 -9.41971 -8.30346 -6.34383 1.35329 1.37296 1.50205 2.36154 2.72551 3.04897 3.12157 3.53628 3.60959 3.78154 3.89910 4.02329 4.04690 4.08052 4.17254 4.20438 4.30534 4.45820 4.48523 4.56324 4.61667 4.70670 4.75884 4.78171 4.83827 4.86570 4.90550 4.95845 5.01774 5.04724 5.12230 5.16051 5.17685 5.18561 5.24542 5.33587 5.42103 5.56125 5.64165 5.67634 6.00732 6.10049 6.28603 6.39850 6.73663 7.30398 8.86641 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032062 B = 0.002704 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.106847 B =10352.151958 C =10960.444013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.030 0.970 9 C -0.013 4.013 10 C -0.094 4.094 11 C -0.107 4.107 12 C 0.067 3.933 13 N -0.695 5.695 14 C 0.066 3.934 15 C 0.079 3.921 16 H 0.071 0.929 17 C -0.147 4.147 18 C -0.135 4.135 19 C 0.068 3.932 20 C -0.127 4.127 21 C -0.139 4.139 22 C -0.152 4.152 23 O -0.372 6.372 24 H 0.266 0.734 25 H 0.019 0.981 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.344 0.656 34 H 0.032 0.968 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.005 -14.477 -1.923 34.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.171 1.171 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.050 4.050 10 C -0.132 4.132 11 C -0.145 4.145 12 C -0.062 4.062 13 N -0.325 5.325 14 C -0.063 4.063 15 C 0.021 3.979 16 H 0.089 0.911 17 C -0.185 4.185 18 C -0.172 4.172 19 C 0.028 3.972 20 C -0.165 4.165 21 C -0.176 4.176 22 C -0.190 4.190 23 O -0.292 6.292 24 H 0.075 0.925 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.162 0.838 34 H 0.050 0.950 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.132 0.868 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 30.783 -14.172 -1.377 33.917 hybrid contribution -0.771 0.484 -0.829 1.231 sum 30.012 -13.689 -2.207 33.060 Atomic orbital electron populations 1.70081 1.08316 1.28184 1.52790 1.26078 0.95690 1.03710 0.94097 0.85598 0.79452 0.78002 0.79240 1.19120 1.20782 1.17073 1.21564 0.92358 0.93090 1.50294 0.95133 1.19544 0.93683 0.95428 0.96358 1.21286 0.94501 0.96930 1.00532 1.21492 0.94463 0.96439 1.02070 1.21880 0.87142 0.96676 1.00463 1.60482 1.07380 1.14256 1.50431 1.22092 0.92828 0.89989 1.01394 1.23118 0.93519 0.93664 0.87585 0.91097 1.22983 0.97832 0.95859 1.01835 1.22765 0.99004 0.95384 1.00092 1.22866 0.83100 0.93056 0.98148 1.22982 0.99686 0.98572 0.95216 1.22821 1.01728 0.96842 0.96207 1.23366 0.99133 0.99131 0.97339 1.88930 1.26576 1.71224 1.42424 0.92480 0.96290 0.96552 0.93560 0.93234 0.91729 0.92369 0.95439 0.90819 0.83817 0.94970 0.88847 0.90381 0.88840 0.90123 0.88641 0.86807 0.91836 0.91531 0.89851 0.92075 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.53 13.96 21.45 0.30 -61.23 16 2 C 0.00 0.04 5.47 84.65 0.46 0.50 16 3 Si 0.95 45.83 27.47 68.60 1.88 47.71 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 6 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 7 C -0.54 -32.23 9.66 25.60 0.25 -31.98 16 8 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 9 C -0.01 -0.62 4.04 29.85 0.12 -0.50 16 10 C -0.09 -3.82 5.15 30.59 0.16 -3.67 16 11 C -0.11 -3.46 5.47 30.59 0.17 -3.30 16 12 C 0.07 1.85 5.69 86.30 0.49 2.34 16 13 N -0.69 -17.43 6.50 -513.89 -3.34 -20.77 16 14 C 0.07 1.35 5.32 86.30 0.46 1.81 16 15 C 0.08 1.44 3.55 31.12 0.11 1.55 16 16 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 17 C -0.15 -1.88 6.65 31.70 0.21 -1.67 16 18 C -0.13 -1.55 6.48 31.37 0.20 -1.35 16 19 C 0.07 1.06 1.13 -10.74 -0.01 1.05 16 20 C -0.13 -1.73 7.61 30.85 0.23 -1.50 16 21 C -0.14 -1.94 8.09 31.24 0.25 -1.69 16 22 C -0.15 -2.07 7.57 30.86 0.23 -1.84 16 23 O -0.37 -8.09 10.67 -148.98 -1.59 -9.68 16 24 H 0.27 15.97 8.31 -92.70 -0.77 15.20 16 25 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 26 H 0.02 0.77 7.57 -2.39 -0.02 0.76 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.34 8.97 8.32 -89.69 -0.75 8.22 16 34 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.08 0.97 7.87 -2.39 -0.02 0.95 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 39 H 0.10 0.75 7.84 -2.39 -0.02 0.73 16 40 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.11 1.00 7.97 -2.39 -0.02 0.98 16 Total: -1.00 -68.72 354.53 0.71 -68.00 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.12 Total: 16.19 kcal Atomic # 6 Polarization: -43.57 SS G_CDS: 3.34 Total: -40.23 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -3.04 Total: -82.00 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -1.59 Total: -9.68 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.88 Total: 47.71 kcal Total: -68.72 0.71 -68.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711436856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.214 kcal (2) G-P(sol) polarization free energy of solvation -68.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds