Wall clock time and date at job start Mon Mar 30 2020 06:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00087 * 2 1 4 4 H 1.48507 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47597 * 300.00359 * 3 2 1 6 6 H 1.48500 * 109.47221 * 60.00348 * 3 2 1 7 7 C 1.37869 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00507 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00284 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47471 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47205 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47520 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47708 * 180.02562 * 12 11 10 14 14 C 1.46901 * 111.00254 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46941 * 179.97438 * 14 13 12 16 16 H 1.09002 * 110.29956 * 305.70123 * 15 14 13 17 17 C 1.54549 * 110.33200 * 183.54978 * 15 14 13 18 18 C 1.54716 * 104.07250 * 217.34756 * 17 15 14 19 19 C 1.53558 * 103.75299 * 0.69586 * 18 17 15 20 20 C 1.52804 * 115.46496 * 253.20735 * 19 18 17 21 21 C 1.53957 * 86.79077 * 217.65851 * 20 19 18 22 22 C 1.52801 * 115.48676 * 152.49692 * 19 18 17 23 23 O 1.43350 * 106.13087 * 22.83146 * 19 18 17 24 24 H 0.97009 * 119.99980 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46964 * 59.99539 * 9 7 2 26 26 H 1.09006 * 109.46697 * 299.99941 * 9 7 2 27 27 H 1.08999 * 109.47166 * 59.99489 * 10 9 7 28 28 H 1.09006 * 109.46936 * 299.99579 * 10 9 7 29 29 H 1.08999 * 109.47439 * 59.99701 * 11 10 9 30 30 H 1.09005 * 109.47317 * 299.99951 * 11 10 9 31 31 H 1.08999 * 109.46833 * 59.99545 * 12 11 10 32 32 H 1.09005 * 109.46961 * 300.00385 * 12 11 10 33 33 H 1.00899 * 110.99564 * 303.95841 * 13 12 11 34 34 H 1.09001 * 109.46610 * 59.99602 * 14 13 12 35 35 H 1.08992 * 109.46869 * 299.99887 * 14 13 12 36 36 H 1.09002 * 110.50463 * 335.99802 * 17 15 14 37 37 H 1.08999 * 110.50521 * 98.56393 * 17 15 14 38 38 H 1.08997 * 110.56722 * 119.26151 * 18 17 15 39 39 H 1.09001 * 110.56795 * 241.98246 * 18 17 15 40 40 H 1.09003 * 113.66468 * 332.13002 * 20 19 18 41 41 H 1.09000 * 113.66640 * 103.18740 * 20 19 18 42 42 H 1.09004 * 113.58831 * 270.12370 * 21 20 19 43 43 H 1.09005 * 113.58958 * 139.30537 * 21 20 19 44 44 H 1.09003 * 113.65972 * 256.79574 * 22 19 18 45 45 H 1.09001 * 113.66001 * 27.84461 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4743 -6.1500 -0.0005 13 7 1.7399 -7.4222 -0.0005 14 6 2.6643 -8.5639 -0.0018 15 6 1.8642 -9.8680 -0.0011 16 1 1.1589 -9.8784 0.8299 17 6 2.8163 -11.0821 0.0874 18 6 2.1574 -12.1441 -0.8246 19 6 0.9048 -11.4371 -1.3622 20 6 -0.4222 -11.9121 -0.7720 21 6 -1.0153 -11.7286 -2.1808 22 6 0.4119 -11.9193 -2.7258 23 8 1.1645 -10.0313 -1.2562 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8898 27 1 2.8719 -3.6043 0.8894 28 1 2.8718 -3.6044 -0.8906 29 1 0.8532 -5.0451 -0.8896 30 1 0.8538 -5.0446 0.8904 31 1 3.1017 -6.0922 0.8890 32 1 3.1004 -6.0923 -0.8910 33 1 1.1037 -7.4724 0.7810 34 1 3.2930 -8.5232 0.8878 35 1 3.2915 -8.5225 -0.8922 36 1 3.8061 -10.8192 -0.2860 37 1 2.8799 -11.4435 1.1138 38 1 2.8254 -12.4142 -1.6423 39 1 1.8833 -13.0274 -0.2476 40 1 -0.4054 -12.9490 -0.4361 41 1 -0.8394 -11.2317 -0.0297 42 1 -1.4200 -10.7320 -2.3573 43 1 -1.7029 -12.5229 -2.4715 44 1 0.6612 -11.2445 -3.5448 45 1 0.6634 -12.9582 -2.9395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711436864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:37 Heat of formation + Delta-G solvation = -50.814155 kcal Electronic energy + Delta-G solvation = -19959.419972 eV Core-core repulsion = 16976.345920 eV Total energy + Delta-G solvation = -2983.074052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.74835 -37.30184 -35.96780 -34.01529 -32.46712 -32.03757 -29.61542 -27.50484 -26.07661 -24.94219 -23.60125 -22.13616 -21.57702 -20.98898 -19.91179 -19.51076 -16.74285 -16.26557 -16.03904 -15.93371 -15.40990 -14.88820 -14.53885 -14.29929 -14.00476 -13.87423 -13.26158 -13.21488 -12.66714 -12.47374 -12.23947 -12.13286 -11.93211 -11.72380 -11.46642 -11.28171 -11.19514 -10.97477 -10.89475 -10.70051 -10.52024 -10.41153 -10.38446 -10.37607 -9.70176 -9.57741 -9.20886 -8.94644 -8.30863 -8.28084 -5.94248 -3.96278 3.34212 3.41329 3.45750 3.46900 4.09355 4.19535 4.25681 4.48405 4.51352 4.55274 4.69868 4.74449 4.91289 5.02671 5.12433 5.20566 5.34821 5.41129 5.42396 5.46117 5.48142 5.50693 5.58366 5.63291 5.66637 5.67258 5.80469 5.86467 5.96743 6.02429 6.07527 6.21470 6.31022 6.57294 6.84342 6.88854 7.02287 7.10297 7.28803 7.47806 7.75772 7.92001 8.07431 8.50256 9.11580 9.67413 11.17196 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038795 B = 0.002479 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.561239 B =11291.707144 C =11742.480350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.108 4.108 11 C -0.115 4.115 12 C 0.060 3.940 13 N -0.685 5.685 14 C 0.064 3.936 15 C 0.081 3.919 16 H 0.067 0.933 17 C -0.151 4.151 18 C -0.138 4.138 19 C 0.077 3.923 20 C -0.157 4.157 21 C -0.136 4.136 22 C -0.129 4.129 23 O -0.325 6.325 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.338 0.662 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.970 -28.539 -0.442 28.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.068 4.068 13 N -0.315 5.315 14 C -0.065 4.065 15 C 0.022 3.978 16 H 0.084 0.916 17 C -0.189 4.189 18 C -0.176 4.176 19 C 0.036 3.964 20 C -0.194 4.194 21 C -0.173 4.173 22 C -0.166 4.166 23 O -0.243 6.243 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.155 0.845 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.693 -28.248 -1.282 28.405 hybrid contribution 0.815 0.854 1.138 1.640 sum 3.508 -27.393 -0.143 27.618 Atomic orbital electron populations 1.69984 1.06043 1.26369 1.51190 1.25039 0.94849 0.99238 0.95489 0.86556 0.80109 0.83911 0.77538 1.19785 1.21026 1.21062 1.21334 0.93046 0.91225 1.50083 0.92734 1.19102 0.94051 0.91353 0.97172 1.21586 0.99066 0.93990 1.00028 1.21632 0.97880 0.93787 1.02027 1.22075 0.96206 0.88554 1.00001 1.60421 1.19662 1.01447 1.49995 1.22021 0.94222 0.89113 1.01154 1.23035 0.92803 0.94380 0.87535 0.91555 1.22986 0.99979 0.95384 1.00575 1.22742 0.96982 0.98361 0.99503 1.22651 0.93276 0.83161 0.97294 1.23342 0.96743 1.01514 0.97842 1.22830 0.96174 1.02466 0.95825 1.22903 0.96199 1.01309 0.96220 1.89136 1.76298 1.20801 1.38102 0.93124 0.96567 0.96747 0.93736 0.93449 0.91588 0.92799 0.95719 0.91288 0.84451 0.94113 0.90243 0.90499 0.90591 0.90540 0.90583 0.89569 0.90822 0.89559 0.91472 0.90355 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.29 55.43 0.74 -26.98 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 11 C -0.12 -2.08 5.47 -26.73 -0.15 -2.22 16 12 C 0.06 0.90 5.68 -3.83 -0.02 0.88 16 13 N -0.68 -9.32 6.50 -113.78 -0.74 -10.06 16 14 C 0.06 0.72 5.29 -3.82 -0.02 0.70 16 15 C 0.08 0.82 3.47 -25.92 -0.09 0.73 16 16 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 17 C -0.15 -1.18 6.64 -25.01 -0.17 -1.34 16 18 C -0.14 -1.03 6.48 -25.54 -0.17 -1.20 16 19 C 0.08 0.71 1.13 -90.54 -0.10 0.61 16 20 C -0.16 -1.29 7.57 -26.33 -0.20 -1.49 16 21 C -0.14 -1.14 8.09 -25.75 -0.21 -1.34 16 22 C -0.13 -1.07 7.61 -26.34 -0.20 -1.27 16 23 O -0.32 -4.06 11.12 -35.23 -0.39 -4.45 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.34 4.28 8.73 -39.29 -0.34 3.94 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.58 7.87 -51.93 -0.41 0.17 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 39 H 0.08 0.46 7.85 -51.93 -0.41 0.05 16 40 H 0.09 0.56 7.97 -51.93 -0.41 0.15 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 358.89 15.07 5.41 5.41 Total: -1.00 -31.85 358.89 -10.74 -42.59 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -8.72 Total: -1.66 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -2.01 Total: -21.99 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.00 Total: -37.04 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.39 Total: -4.45 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.85 -10.74 -42.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711436864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.222 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds