Wall clock time and date at job start Mon Mar 30 2020 06:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00087 * 2 1 4 4 H 1.48507 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47597 * 300.00359 * 3 2 1 6 6 H 1.48500 * 109.47221 * 60.00348 * 3 2 1 7 7 C 1.37869 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00507 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00284 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47471 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47205 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47520 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47708 * 180.02562 * 12 11 10 14 14 C 1.46901 * 111.00254 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46941 * 179.97438 * 14 13 12 16 16 H 1.09002 * 110.29956 * 305.70123 * 15 14 13 17 17 C 1.54549 * 110.33200 * 183.54978 * 15 14 13 18 18 C 1.54716 * 104.07250 * 217.34756 * 17 15 14 19 19 C 1.53558 * 103.75299 * 0.69586 * 18 17 15 20 20 C 1.52804 * 115.46496 * 253.20735 * 19 18 17 21 21 C 1.53957 * 86.79077 * 217.65851 * 20 19 18 22 22 C 1.52801 * 115.48676 * 152.49692 * 19 18 17 23 23 O 1.43350 * 106.13087 * 22.83146 * 19 18 17 24 24 H 0.97009 * 119.99980 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46964 * 59.99539 * 9 7 2 26 26 H 1.09006 * 109.46697 * 299.99941 * 9 7 2 27 27 H 1.08999 * 109.47166 * 59.99489 * 10 9 7 28 28 H 1.09006 * 109.46936 * 299.99579 * 10 9 7 29 29 H 1.08999 * 109.47439 * 59.99701 * 11 10 9 30 30 H 1.09005 * 109.47317 * 299.99951 * 11 10 9 31 31 H 1.08999 * 109.46833 * 59.99545 * 12 11 10 32 32 H 1.09005 * 109.46961 * 300.00385 * 12 11 10 33 33 H 1.00899 * 110.99564 * 303.95841 * 13 12 11 34 34 H 1.09001 * 109.46610 * 59.99602 * 14 13 12 35 35 H 1.08992 * 109.46869 * 299.99887 * 14 13 12 36 36 H 1.09002 * 110.50463 * 335.99802 * 17 15 14 37 37 H 1.08999 * 110.50521 * 98.56393 * 17 15 14 38 38 H 1.08997 * 110.56722 * 119.26151 * 18 17 15 39 39 H 1.09001 * 110.56795 * 241.98246 * 18 17 15 40 40 H 1.09003 * 113.66468 * 332.13002 * 20 19 18 41 41 H 1.09000 * 113.66640 * 103.18740 * 20 19 18 42 42 H 1.09004 * 113.58831 * 270.12370 * 21 20 19 43 43 H 1.09005 * 113.58958 * 139.30537 * 21 20 19 44 44 H 1.09003 * 113.65972 * 256.79574 * 22 19 18 45 45 H 1.09001 * 113.66001 * 27.84461 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4743 -6.1500 -0.0005 13 7 1.7399 -7.4222 -0.0005 14 6 2.6643 -8.5639 -0.0018 15 6 1.8642 -9.8680 -0.0011 16 1 1.1589 -9.8784 0.8299 17 6 2.8163 -11.0821 0.0874 18 6 2.1574 -12.1441 -0.8246 19 6 0.9048 -11.4371 -1.3622 20 6 -0.4222 -11.9121 -0.7720 21 6 -1.0153 -11.7286 -2.1808 22 6 0.4119 -11.9193 -2.7258 23 8 1.1645 -10.0313 -1.2562 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8898 27 1 2.8719 -3.6043 0.8894 28 1 2.8718 -3.6044 -0.8906 29 1 0.8532 -5.0451 -0.8896 30 1 0.8538 -5.0446 0.8904 31 1 3.1017 -6.0922 0.8890 32 1 3.1004 -6.0923 -0.8910 33 1 1.1037 -7.4724 0.7810 34 1 3.2930 -8.5232 0.8878 35 1 3.2915 -8.5225 -0.8922 36 1 3.8061 -10.8192 -0.2860 37 1 2.8799 -11.4435 1.1138 38 1 2.8254 -12.4142 -1.6423 39 1 1.8833 -13.0274 -0.2476 40 1 -0.4054 -12.9490 -0.4361 41 1 -0.8394 -11.2317 -0.0297 42 1 -1.4200 -10.7320 -2.3573 43 1 -1.7029 -12.5229 -2.4715 44 1 0.6612 -11.2445 -3.5448 45 1 0.6634 -12.9582 -2.9395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711436864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:37 Heat of formation + Delta-G solvation = -70.278019 kcal Electronic energy + Delta-G solvation = -19960.263988 eV Core-core repulsion = 16976.345920 eV Total energy + Delta-G solvation = -2983.918069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.44152 -38.28006 -37.07483 -35.73745 -34.05886 -33.03808 -30.96270 -28.89619 -26.76183 -26.34765 -24.85167 -23.00629 -22.83633 -22.01927 -21.56255 -20.18638 -18.45160 -17.54590 -16.99836 -16.74551 -16.53123 -16.26893 -15.91199 -15.45181 -15.13607 -14.75080 -14.51618 -14.18423 -13.89740 -13.64582 -13.61155 -13.27386 -13.07669 -12.87608 -12.81870 -12.53991 -12.38021 -12.23851 -12.12072 -12.04220 -11.84440 -11.64109 -11.39367 -11.35471 -11.29565 -11.02922 -10.95534 -10.56873 -10.43692 -9.34006 -8.20585 -6.32342 1.38944 1.39853 1.53368 2.40433 2.77565 3.12038 3.13757 3.55551 3.62649 3.78924 3.90625 4.01629 4.03644 4.11609 4.15449 4.25950 4.32739 4.47115 4.50395 4.55181 4.65556 4.69446 4.78592 4.82625 4.84528 4.87177 4.93032 4.95934 5.01985 5.04532 5.17145 5.18948 5.22868 5.26920 5.34158 5.35188 5.44163 5.54223 5.76741 5.85895 6.03726 6.17609 6.24905 6.45922 6.85430 7.37090 8.91717 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038795 B = 0.002479 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.561239 B =11291.707144 C =11742.480350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.022 3.978 10 C -0.096 4.096 11 C -0.106 4.106 12 C 0.073 3.927 13 N -0.698 5.698 14 C 0.066 3.934 15 C 0.078 3.922 16 H 0.067 0.933 17 C -0.146 4.146 18 C -0.134 4.134 19 C 0.063 3.937 20 C -0.151 4.151 21 C -0.140 4.140 22 C -0.128 4.128 23 O -0.362 6.362 24 H 0.264 0.736 25 H -0.013 1.013 26 H -0.010 1.010 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.343 0.657 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.597 -29.901 0.187 30.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.134 4.134 11 C -0.144 4.144 12 C -0.056 4.056 13 N -0.330 5.330 14 C -0.063 4.063 15 C 0.020 3.980 16 H 0.085 0.915 17 C -0.184 4.184 18 C -0.171 4.171 19 C 0.023 3.977 20 C -0.189 4.189 21 C -0.177 4.177 22 C -0.165 4.165 23 O -0.281 6.281 24 H 0.072 0.928 25 H 0.005 0.995 26 H 0.008 0.992 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.161 0.839 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.328 -29.632 -0.651 29.953 hybrid contribution 0.238 1.262 0.922 1.581 sum 4.566 -28.370 0.271 28.736 Atomic orbital electron populations 1.70121 1.07912 1.27734 1.51834 1.26052 0.95826 1.03595 0.94731 0.85352 0.79047 0.78505 0.77848 1.18481 1.20327 1.20195 1.21771 0.93587 0.92470 1.50338 0.92123 1.19033 0.94529 0.93387 0.94559 1.21392 0.97958 0.93550 1.00507 1.21462 0.98076 0.93526 1.01302 1.21833 0.95203 0.88041 1.00524 1.60355 1.20436 1.01589 1.50592 1.22064 0.94035 0.88666 1.01515 1.23106 0.93196 0.94813 0.86888 0.91502 1.22983 0.99355 0.94290 1.01815 1.22754 0.95981 0.98664 0.99750 1.22901 0.94630 0.82099 0.98066 1.23358 0.95909 1.02466 0.97138 1.22814 0.96706 1.01771 0.96420 1.22973 0.95922 1.02266 0.95327 1.89095 1.76876 1.22986 1.39147 0.92755 0.99457 0.99163 0.92840 0.93180 0.93159 0.92749 0.94408 0.91483 0.83933 0.92248 0.91141 0.90254 0.88773 0.90125 0.88597 0.87195 0.92169 0.91900 0.89773 0.92077 0.86672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.90 13.29 21.44 0.28 -58.62 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.54 -32.21 9.11 25.60 0.23 -31.98 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.02 1.23 4.97 29.85 0.15 1.37 16 10 C -0.10 -4.13 5.15 30.59 0.16 -3.97 16 11 C -0.11 -3.83 5.47 30.59 0.17 -3.66 16 12 C 0.07 2.12 5.68 86.30 0.49 2.61 16 13 N -0.70 -18.61 6.50 -513.90 -3.34 -21.94 16 14 C 0.07 1.41 5.29 86.30 0.46 1.87 16 15 C 0.08 1.50 3.47 31.12 0.11 1.61 16 16 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 17 C -0.15 -1.95 6.64 31.71 0.21 -1.74 16 18 C -0.13 -1.67 6.48 31.37 0.20 -1.47 16 19 C 0.06 1.10 1.13 -10.74 -0.01 1.09 16 20 C -0.15 -2.29 7.57 30.85 0.23 -2.06 16 21 C -0.14 -2.27 8.09 31.23 0.25 -2.02 16 22 C -0.13 -2.01 7.61 30.85 0.23 -1.78 16 23 O -0.36 -9.00 11.12 -148.98 -1.66 -10.65 16 24 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 25 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 26 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 27 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.34 8.49 8.73 -89.69 -0.78 7.71 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 1.02 7.87 -2.39 -0.02 1.00 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.94 8.12 -2.39 -0.02 0.92 16 39 H 0.10 0.82 7.85 -2.39 -0.02 0.80 16 40 H 0.11 1.12 7.97 -2.39 -0.02 1.11 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 43 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -69.48 358.89 0.80 -68.68 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.14 Total: 15.03 kcal Atomic # 6 Polarization: -43.29 SS G_CDS: 3.35 Total: -39.94 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -3.05 Total: -80.56 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -1.66 Total: -10.65 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -69.48 0.80 -68.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711436864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.597 kcal (2) G-P(sol) polarization free energy of solvation -69.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds