Wall clock time and date at job start Mon Mar 30 2020 06:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46707 * 2 1 4 4 C 1.52990 * 109.47413 * 239.99628 * 2 1 3 5 5 C 1.50705 * 109.47285 * 65.49088 * 4 2 1 6 6 H 1.08002 * 119.99415 * 5.15457 * 5 4 2 7 7 C 1.37872 * 120.00271 * 185.15586 * 5 4 2 8 8 N 1.31516 * 119.99994 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00066 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47138 * 89.99718 * 9 7 5 11 11 H 1.48500 * 109.47539 * 210.00033 * 9 7 5 12 12 H 1.48500 * 109.47185 * 330.00329 * 9 7 5 13 13 N 1.46902 * 109.46709 * 119.99553 * 2 1 3 14 14 C 1.50153 * 110.99668 * 174.61229 * 13 2 1 15 15 C 1.55908 * 106.32529 * 145.83028 * 14 13 2 16 16 C 1.50959 * 102.90754 * 5.79425 * 15 14 13 17 17 C 1.50692 * 110.01445 * 82.54525 * 16 15 14 18 18 O 1.20825 * 120.00235 * 114.53295 * 17 16 15 19 19 O 1.34236 * 120.00077 * 294.53610 * 17 16 15 20 20 C 1.50662 * 124.36650 * 215.45666 * 16 15 14 21 21 C 1.55807 * 104.30713 * 145.55733 * 20 16 15 22 22 C 1.56271 * 105.86892 * 352.97795 * 21 20 16 23 23 C 1.44520 * 111.00316 * 288.49596 * 13 2 1 24 24 H 1.08999 * 109.95952 * 309.30052 * 23 13 2 25 25 H 1.09003 * 109.47135 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47248 * 300.00439 * 1 2 3 27 27 H 1.08999 * 109.47141 * 60.00120 * 1 2 3 28 28 H 1.08999 * 109.47891 * 185.49310 * 4 2 1 29 29 H 1.09000 * 109.47290 * 305.49601 * 4 2 1 30 30 H 0.97001 * 119.99762 * 180.02562 * 8 7 5 31 31 H 1.08998 * 110.08266 * 265.04315 * 14 13 2 32 32 H 1.08994 * 110.08643 * 26.61018 * 14 13 2 33 33 H 1.08998 * 110.72899 * 124.14620 * 15 14 13 34 34 H 1.09000 * 110.72787 * 247.43856 * 15 14 13 35 35 H 0.96697 * 116.99523 * 179.97438 * 19 17 16 36 36 H 1.08996 * 110.45966 * 264.26047 * 20 16 15 37 37 H 1.08989 * 110.46699 * 26.84954 * 20 16 15 38 38 H 1.08996 * 110.16789 * 233.88219 * 21 20 16 39 39 H 1.08997 * 110.17368 * 112.07959 * 21 20 16 40 40 H 1.09000 * 110.95541 * 216.99861 * 22 21 20 41 41 H 1.09001 * 110.95495 * 93.26923 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6518 0.0632 -2.4759 6 1 1.1706 1.0245 -2.3722 7 6 1.9110 -0.4463 -3.7306 8 7 2.4966 -1.6171 -3.8568 9 14 1.4304 0.5264 -5.2512 10 1 2.5555 1.4101 -5.6495 11 1 1.1201 -0.4105 -6.3607 12 1 0.2337 1.3532 -4.9522 13 7 2.0196 -0.6924 1.1995 14 6 3.5147 -0.8275 1.1702 15 6 3.9943 -0.7115 2.6492 16 6 2.6980 -0.6644 3.4213 17 6 2.1732 -2.0609 3.6337 18 8 2.1055 -2.5175 4.7503 19 8 1.7809 -2.7977 2.5824 20 6 2.4804 0.1516 4.6690 21 6 0.9927 0.6053 4.5778 22 6 0.4954 0.1582 3.1654 23 6 1.7887 0.1002 2.3857 24 1 2.1666 1.1117 2.2367 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1256 -0.8073 -1.2013 29 1 1.5986 -1.7166 -1.2996 30 1 2.6792 -1.9753 -4.7395 31 1 3.7949 -1.7981 0.7610 32 1 3.9511 -0.0282 0.5714 33 1 4.5814 -1.5845 2.9340 34 1 4.5659 0.2046 2.7986 35 1 1.4519 -3.6877 2.7685 36 1 2.6385 -0.4605 5.5569 37 1 3.1429 1.0170 4.6787 38 1 0.9236 1.6887 4.6750 39 1 0.4031 0.1191 5.3551 40 1 -0.1838 0.8967 2.7395 41 1 0.0233 -0.8232 3.2110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711618966.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:35 Heat of formation + Delta-G solvation = -76.486933 kcal Electronic energy + Delta-G solvation = -22040.722753 eV Core-core repulsion = 18920.702351 eV Total energy + Delta-G solvation = -3120.020402 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.46150 -38.73340 -36.18485 -35.44813 -33.56485 -32.31618 -29.89500 -27.56943 -26.94868 -26.49860 -23.68893 -22.96464 -21.54106 -20.36992 -19.38962 -18.76291 -17.53891 -16.58627 -16.24728 -15.92948 -15.07501 -14.85240 -14.44678 -14.19783 -13.60332 -13.48921 -13.21433 -12.66086 -12.53707 -12.26222 -11.99278 -11.87112 -11.40852 -11.30404 -11.22976 -11.09149 -10.88539 -10.84463 -10.69954 -10.67157 -10.58662 -10.30366 -10.19525 -10.04586 -9.85518 -9.11629 -9.08096 -8.33580 -7.78268 -5.98858 -4.00420 2.46152 3.31431 3.32867 3.38265 3.40953 3.87185 4.40557 4.53800 4.61540 4.92163 5.06045 5.13774 5.23076 5.36390 5.38124 5.42719 5.54237 5.66142 5.69338 5.87677 5.90631 5.91737 5.97971 6.06821 6.09956 6.17723 6.29253 6.30038 6.42751 6.48743 6.70909 6.82478 6.90648 7.15230 7.44334 7.58659 7.76841 7.89003 8.10059 8.27966 8.44963 9.06207 9.62725 11.12391 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.032442 B = 0.005223 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.860100 B = 5359.940592 C = 5623.801634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.075 3.925 3 H 0.027 0.973 4 C 0.032 3.968 5 C -0.516 4.516 6 H 0.054 0.946 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.475 5.475 14 C 0.043 3.957 15 C -0.109 4.109 16 C -0.079 4.079 17 C 0.505 3.495 18 O -0.538 6.538 19 O -0.469 6.469 20 C -0.103 4.103 21 C -0.123 4.123 22 C -0.111 4.111 23 C 0.070 3.930 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.014 0.986 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.394 0.606 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.192 2.690 15.325 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.033 4.033 3 H 0.045 0.955 4 C -0.005 4.005 5 C -0.555 4.555 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.199 5.199 14 C -0.084 4.084 15 C -0.147 4.147 16 C -0.081 4.081 17 C 0.349 3.651 18 O -0.430 6.430 19 O -0.275 6.275 20 C -0.141 4.141 21 C -0.161 4.161 22 C -0.149 4.149 23 C -0.040 4.040 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.032 0.968 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.250 0.750 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.296 2.320 15.372 15.549 hybrid contribution -0.002 0.688 -0.910 1.141 sum -0.298 3.008 14.461 14.774 Atomic orbital electron populations 1.21707 0.95175 1.01606 0.99928 1.22050 0.95436 0.95066 0.90702 0.95535 1.19158 0.95955 0.96279 0.89131 1.21195 1.39063 1.04345 0.90933 0.92816 1.24973 0.95365 0.94940 0.98978 1.69970 1.42518 1.17543 1.23220 0.86648 0.78823 0.79854 0.82979 1.20798 1.21264 1.19935 1.64791 1.10128 1.43734 1.01209 1.23614 0.88283 1.02884 0.93604 1.21950 0.94498 1.02875 0.95352 1.21324 0.98649 0.89937 0.98190 1.22908 0.72715 0.87796 0.81710 1.90640 1.53199 1.73006 1.26115 1.84954 1.74560 1.30121 1.37868 1.21615 0.97148 0.99027 0.96312 1.22926 0.95157 1.01052 0.96984 1.21986 0.96555 1.02203 0.94114 1.22643 0.95133 0.95398 0.90876 0.93155 0.92707 0.94943 0.91817 0.96809 0.95276 0.93070 0.89551 0.92616 0.90899 0.90147 0.75042 0.89782 0.90385 0.91198 0.91356 0.90655 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.99 37.16 0.33 -2.07 16 2 C 0.07 1.51 1.81 -67.72 -0.12 1.39 16 3 H 0.03 0.55 7.89 -51.93 -0.41 0.14 16 4 C 0.03 0.80 4.35 -27.89 -0.12 0.68 16 5 C -0.52 -14.16 8.31 -34.44 -0.29 -14.45 16 6 H 0.05 1.44 7.29 -52.49 -0.38 1.06 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.47 -8.22 3.33 -213.96 -0.71 -8.93 16 14 C 0.04 0.71 4.82 -0.45 0.00 0.70 16 15 C -0.11 -1.41 6.26 -26.20 -0.16 -1.57 16 16 C -0.08 -1.06 1.10 -155.34 -0.17 -1.23 16 17 C 0.51 7.46 5.39 36.00 0.19 7.66 16 18 O -0.54 -8.89 16.43 -18.75 -0.31 -9.19 16 19 O -0.47 -6.74 11.10 -39.27 -0.44 -7.18 16 20 C -0.10 -1.18 6.01 -26.40 -0.16 -1.34 16 21 C -0.12 -1.34 6.82 -23.48 -0.16 -1.50 16 22 C -0.11 -1.44 5.39 -25.92 -0.14 -1.58 16 23 C 0.07 1.02 1.52 -67.42 -0.10 0.91 16 24 H 0.05 0.74 7.91 -51.93 -0.41 0.33 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.03 0.52 5.49 -51.93 -0.29 0.24 16 27 H 0.06 1.28 7.10 -51.93 -0.37 0.92 16 28 H 0.01 0.36 6.55 -51.93 -0.34 0.02 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.09 1.51 8.12 -51.93 -0.42 1.08 16 32 H 0.06 0.95 7.37 -51.93 -0.38 0.57 16 33 H 0.07 0.90 7.96 -51.93 -0.41 0.48 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.39 4.05 9.10 45.56 0.41 4.46 16 36 H 0.08 1.02 7.04 -51.93 -0.37 0.65 16 37 H 0.08 0.75 8.14 -51.94 -0.42 0.33 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.94 6.84 -51.93 -0.36 0.58 16 41 H 0.07 1.02 7.32 -51.93 -0.38 0.64 16 LS Contribution 314.40 15.07 4.74 4.74 Total: -1.00 -31.33 314.40 -7.77 -39.10 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.77 Total: 1.67 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -1.00 Total: -10.84 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.02 Total: -34.66 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.74 Total: -16.37 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.33 -7.77 -39.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711618966.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.387 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds