Wall clock time and date at job start Mon Mar 30 2020 06:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46707 * 2 1 4 4 C 1.52990 * 109.47413 * 239.99628 * 2 1 3 5 5 C 1.50705 * 109.47285 * 65.49088 * 4 2 1 6 6 H 1.08002 * 119.99415 * 5.15457 * 5 4 2 7 7 C 1.37872 * 120.00271 * 185.15586 * 5 4 2 8 8 N 1.31516 * 119.99994 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00066 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47138 * 89.99718 * 9 7 5 11 11 H 1.48500 * 109.47539 * 210.00033 * 9 7 5 12 12 H 1.48500 * 109.47185 * 330.00329 * 9 7 5 13 13 N 1.46902 * 109.46709 * 119.99553 * 2 1 3 14 14 C 1.50153 * 110.99668 * 174.61229 * 13 2 1 15 15 C 1.55908 * 106.32529 * 145.83028 * 14 13 2 16 16 C 1.50959 * 102.90754 * 5.79425 * 15 14 13 17 17 C 1.50692 * 110.01445 * 82.54525 * 16 15 14 18 18 O 1.20825 * 120.00235 * 114.53295 * 17 16 15 19 19 O 1.34236 * 120.00077 * 294.53610 * 17 16 15 20 20 C 1.50662 * 124.36650 * 215.45666 * 16 15 14 21 21 C 1.55807 * 104.30713 * 145.55733 * 20 16 15 22 22 C 1.56271 * 105.86892 * 352.97795 * 21 20 16 23 23 C 1.44520 * 111.00316 * 288.49596 * 13 2 1 24 24 H 1.08999 * 109.95952 * 309.30052 * 23 13 2 25 25 H 1.09003 * 109.47135 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47248 * 300.00439 * 1 2 3 27 27 H 1.08999 * 109.47141 * 60.00120 * 1 2 3 28 28 H 1.08999 * 109.47891 * 185.49310 * 4 2 1 29 29 H 1.09000 * 109.47290 * 305.49601 * 4 2 1 30 30 H 0.97001 * 119.99762 * 180.02562 * 8 7 5 31 31 H 1.08998 * 110.08266 * 265.04315 * 14 13 2 32 32 H 1.08994 * 110.08643 * 26.61018 * 14 13 2 33 33 H 1.08998 * 110.72899 * 124.14620 * 15 14 13 34 34 H 1.09000 * 110.72787 * 247.43856 * 15 14 13 35 35 H 0.96697 * 116.99523 * 179.97438 * 19 17 16 36 36 H 1.08996 * 110.45966 * 264.26047 * 20 16 15 37 37 H 1.08989 * 110.46699 * 26.84954 * 20 16 15 38 38 H 1.08996 * 110.16789 * 233.88219 * 21 20 16 39 39 H 1.08997 * 110.17368 * 112.07959 * 21 20 16 40 40 H 1.09000 * 110.95541 * 216.99861 * 22 21 20 41 41 H 1.09001 * 110.95495 * 93.26923 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6518 0.0632 -2.4759 6 1 1.1706 1.0245 -2.3722 7 6 1.9110 -0.4463 -3.7306 8 7 2.4966 -1.6171 -3.8568 9 14 1.4304 0.5264 -5.2512 10 1 2.5555 1.4101 -5.6495 11 1 1.1201 -0.4105 -6.3607 12 1 0.2337 1.3532 -4.9522 13 7 2.0196 -0.6924 1.1995 14 6 3.5147 -0.8275 1.1702 15 6 3.9943 -0.7115 2.6492 16 6 2.6980 -0.6644 3.4213 17 6 2.1732 -2.0609 3.6337 18 8 2.1055 -2.5175 4.7503 19 8 1.7809 -2.7977 2.5824 20 6 2.4804 0.1516 4.6690 21 6 0.9927 0.6053 4.5778 22 6 0.4954 0.1582 3.1654 23 6 1.7887 0.1002 2.3857 24 1 2.1666 1.1117 2.2367 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1256 -0.8073 -1.2013 29 1 1.5986 -1.7166 -1.2996 30 1 2.6792 -1.9753 -4.7395 31 1 3.7949 -1.7981 0.7610 32 1 3.9511 -0.0282 0.5714 33 1 4.5814 -1.5845 2.9340 34 1 4.5659 0.2046 2.7986 35 1 1.4519 -3.6877 2.7685 36 1 2.6385 -0.4605 5.5569 37 1 3.1429 1.0170 4.6787 38 1 0.9236 1.6887 4.6750 39 1 0.4031 0.1191 5.3551 40 1 -0.1838 0.8967 2.7395 41 1 0.0233 -0.8232 3.2110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711618966.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:34 Heat of formation + Delta-G solvation = -96.403269 kcal Electronic energy + Delta-G solvation = -22041.586390 eV Core-core repulsion = 18920.702351 eV Total energy + Delta-G solvation = -3120.884039 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.60631 -39.97708 -37.46754 -36.76959 -35.10731 -34.03403 -31.36764 -28.97737 -28.28920 -27.87150 -25.30699 -24.42246 -22.78032 -21.59616 -20.64086 -20.08573 -18.75097 -18.53288 -17.49980 -17.05842 -16.55118 -16.41974 -16.03467 -15.29360 -14.90503 -14.84916 -14.50765 -14.25166 -13.85198 -13.59087 -13.50406 -13.12299 -12.98940 -12.83946 -12.55098 -12.44354 -12.37235 -12.30147 -12.25459 -11.98199 -11.83066 -11.66375 -11.46667 -11.40289 -11.23954 -11.07930 -10.81142 -10.50171 -9.17789 -8.15437 -6.24680 1.30070 1.41371 1.42180 1.52933 2.29176 2.42549 2.75560 3.18295 3.22795 3.59968 3.85244 4.07246 4.10830 4.20660 4.26538 4.36406 4.43265 4.50441 4.54213 4.57107 4.67381 4.80231 4.84107 4.96957 4.97272 5.02100 5.09323 5.14697 5.16749 5.20406 5.33293 5.41297 5.47308 5.53109 5.73823 5.75950 5.84343 6.04033 6.29171 6.45481 6.91992 7.20141 7.43381 8.96452 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.032442 B = 0.005223 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.860100 B = 5359.940592 C = 5623.801634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.086 3.914 3 H 0.025 0.975 4 C 0.043 3.957 5 C -0.530 4.530 6 H 0.059 0.941 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.263 1.263 13 N -0.483 5.483 14 C 0.041 3.959 15 C -0.098 4.098 16 C -0.074 4.074 17 C 0.505 3.495 18 O -0.557 6.557 19 O -0.482 6.482 20 C -0.100 4.100 21 C -0.115 4.115 22 C -0.112 4.112 23 C 0.063 3.937 24 H 0.059 0.941 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.049 0.951 28 H -0.008 1.008 29 H -0.009 1.009 30 H 0.261 0.739 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.408 0.592 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 4.689 16.525 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.021 4.021 3 H 0.043 0.957 4 C 0.006 3.994 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.784 3.216 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.187 1.187 13 N -0.207 5.207 14 C -0.087 4.087 15 C -0.136 4.136 16 C -0.076 4.076 17 C 0.349 3.651 18 O -0.450 6.450 19 O -0.291 6.291 20 C -0.138 4.138 21 C -0.153 4.153 22 C -0.149 4.149 23 C -0.047 4.047 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.011 0.989 29 H 0.010 0.990 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.126 0.874 35 H 0.267 0.733 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.634 4.318 16.586 17.150 hybrid contribution 0.110 -0.016 -1.278 1.282 sum -0.524 4.302 15.308 15.910 Atomic orbital electron populations 1.21603 0.94154 1.01027 1.00767 1.21743 0.96145 0.94222 0.90039 0.95724 1.18957 0.94354 0.94705 0.91415 1.21593 1.38661 1.04669 0.91954 0.92243 1.25881 0.95291 0.95913 1.02459 1.70112 1.43832 1.19337 1.24029 0.85540 0.78937 0.78415 0.78713 1.19950 1.21097 1.18722 1.64691 1.10779 1.44101 1.01087 1.23564 0.87870 1.01158 0.96065 1.21903 0.94686 1.04612 0.92368 1.21452 0.98082 0.89136 0.98904 1.23240 0.72204 0.88316 0.81307 1.90629 1.54071 1.73578 1.26707 1.84934 1.74526 1.31369 1.38249 1.21671 0.98044 0.99406 0.94633 1.22908 0.94599 1.02533 0.95309 1.22021 0.95853 1.01743 0.95328 1.22746 0.96774 0.95436 0.89729 0.92321 0.93973 0.91777 0.93202 0.98938 0.99028 0.93005 0.91852 0.93827 0.90235 0.87419 0.73338 0.90339 0.87853 0.88814 0.91157 0.89894 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.44 8.99 71.98 0.65 -3.80 16 2 C 0.09 3.53 1.81 44.91 0.08 3.61 16 3 H 0.02 1.02 7.89 -2.39 -0.02 1.00 16 4 C 0.04 2.24 4.35 29.85 0.13 2.37 16 5 C -0.53 -29.54 8.31 25.60 0.21 -29.33 16 6 H 0.06 3.18 7.29 -2.91 -0.02 3.16 16 7 C 0.00 0.12 5.46 84.65 0.46 0.59 16 8 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 9 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 13 N -0.48 -16.67 3.33 -830.84 -2.77 -19.44 16 14 C 0.04 1.34 4.82 86.67 0.42 1.76 16 15 C -0.10 -2.36 6.26 30.94 0.19 -2.17 16 16 C -0.07 -1.82 1.10 -52.72 -0.06 -1.88 16 17 C 0.50 14.40 5.39 71.23 0.38 14.78 16 18 O -0.56 -17.77 16.43 21.97 0.36 -17.40 16 19 O -0.48 -13.89 11.10 -51.48 -0.57 -14.46 16 20 C -0.10 -1.95 6.01 30.81 0.19 -1.76 16 21 C -0.12 -2.12 6.82 32.70 0.22 -1.90 16 22 C -0.11 -2.63 5.39 31.12 0.17 -2.46 16 23 C 0.06 1.71 1.52 46.38 0.07 1.78 16 24 H 0.06 1.55 7.91 -2.39 -0.02 1.53 16 25 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.98 5.49 -2.39 -0.01 1.96 16 27 H 0.05 1.99 7.10 -2.39 -0.02 1.97 16 28 H -0.01 -0.43 6.55 -2.39 -0.02 -0.44 16 29 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 32 H 0.04 1.52 7.37 -2.39 -0.02 1.50 16 33 H 0.08 1.83 7.96 -2.39 -0.02 1.81 16 34 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.41 8.49 9.10 -74.06 -0.67 7.81 16 36 H 0.08 1.67 7.04 -2.39 -0.02 1.65 16 37 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 1.81 6.84 -2.39 -0.02 1.80 16 41 H 0.06 1.52 7.32 -2.39 -0.02 1.50 16 Total: -1.00 -68.39 314.40 2.80 -65.59 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.35 Total: 14.51 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 3.12 Total: -18.40 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -2.48 Total: -75.85 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.21 Total: -31.87 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -68.39 2.80 -65.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711618966.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.809 kcal (2) G-P(sol) polarization free energy of solvation -68.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds