Wall clock time and date at job start Mon Mar 30 2020 06:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09009 * 109.47113 * 2 1 4 4 C 1.53007 * 109.47210 * 240.00416 * 2 1 3 5 5 C 1.50703 * 109.47063 * 174.99937 * 4 2 1 6 6 H 1.08000 * 119.99794 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99877 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99719 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99752 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47397 * 60.00047 * 9 7 5 11 11 H 1.48505 * 109.46959 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47374 * 299.99462 * 9 7 5 13 13 N 1.46898 * 109.47289 * 120.00045 * 2 1 3 14 14 C 1.48514 * 110.99753 * 28.01454 * 13 2 1 15 15 C 1.54904 * 103.21109 * 199.95977 * 14 13 2 16 16 C 1.54544 * 103.04378 * 37.46901 * 15 14 13 17 17 C 1.50696 * 111.84891 * 216.67563 * 16 15 14 18 18 O 1.20823 * 120.00673 * 117.51476 * 17 16 15 19 19 O 1.34235 * 119.99863 * 297.51496 * 17 16 15 20 20 C 1.54203 * 108.69036 * 91.80195 * 16 15 14 21 21 C 1.55200 * 104.30971 * 271.25886 * 20 16 15 22 22 C 1.54850 * 102.58141 * 321.83232 * 21 20 16 23 23 C 1.47820 * 111.00123 * 270.56938 * 13 2 1 24 24 H 1.08994 * 111.20903 * 268.46768 * 23 13 2 25 25 H 1.08997 * 109.47263 * 176.21260 * 1 2 3 26 26 H 1.08998 * 109.47347 * 296.21233 * 1 2 3 27 27 H 1.09009 * 109.47598 * 56.21448 * 1 2 3 28 28 H 1.09003 * 109.46714 * 294.99795 * 4 2 1 29 29 H 1.08997 * 109.47029 * 54.99636 * 4 2 1 30 30 H 0.97004 * 119.99100 * 179.97438 * 8 7 5 31 31 H 1.08998 * 110.66927 * 318.38774 * 14 13 2 32 32 H 1.08999 * 110.66982 * 81.36197 * 14 13 2 33 33 H 1.09003 * 110.69962 * 155.85963 * 15 14 13 34 34 H 1.08999 * 110.70239 * 279.07234 * 15 14 13 35 35 H 0.96696 * 116.99941 * 179.97438 * 19 17 16 36 36 H 1.09003 * 110.46999 * 29.95060 * 20 16 15 37 37 H 1.08999 * 110.47404 * 152.43380 * 20 16 15 38 38 H 1.08992 * 110.89620 * 203.53556 * 21 20 16 39 39 H 1.09005 * 110.76321 * 80.06175 * 21 20 16 40 40 H 1.09008 * 110.45916 * 279.27149 * 22 21 20 41 41 H 1.09001 * 110.46122 * 156.82360 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0861 -0.5392 7 6 4.2304 -1.1933 -2.3579 8 7 3.5764 -1.8384 -3.2991 9 14 6.0921 -1.0621 -2.4361 10 1 6.6838 -1.6881 -1.2265 11 1 6.5872 -1.7630 -3.6481 12 1 6.4854 0.3686 -2.4958 13 7 2.0196 -0.6925 1.1994 14 6 1.0430 -1.7114 1.6617 15 6 1.4461 -1.9435 3.1392 16 6 1.8453 -0.5293 3.6181 17 6 3.0110 -0.5686 4.5723 18 8 4.0503 -0.0267 4.2792 19 8 2.8946 -1.2058 5.7481 20 6 0.6048 0.1544 4.2278 21 6 -0.0779 0.8552 3.0230 22 6 1.1307 1.3702 2.2032 23 6 2.1833 0.2505 2.3259 24 1 3.1931 0.6598 2.3540 25 1 -0.3633 -1.0254 -0.0679 26 1 -0.3634 0.4539 0.9219 27 1 -0.3634 0.5715 -0.8542 28 1 1.7516 -1.7715 -1.2057 29 1 1.6053 -0.2617 -2.1370 30 1 4.0609 -2.2451 -4.0345 31 1 0.0253 -1.3263 1.5965 32 1 1.1431 -2.6302 1.0840 33 1 0.6006 -2.3208 3.7145 34 1 2.2934 -2.6260 3.2048 35 1 3.6694 -1.2043 6.3267 36 1 -0.0631 -0.5877 4.6652 37 1 0.9032 0.8868 4.9779 38 1 -0.6998 1.6854 3.3576 39 1 -0.6632 0.1423 2.4421 40 1 1.5112 2.2992 2.6280 41 1 0.8493 1.5162 1.1603 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711618968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:40 Heat of formation + Delta-G solvation = -63.477563 kcal Electronic energy + Delta-G solvation = -22133.941312 eV Core-core repulsion = 19014.485038 eV Total energy + Delta-G solvation = -3119.456273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.39393 -39.47400 -36.08148 -35.36664 -32.96131 -32.39515 -29.86612 -28.52604 -27.07626 -26.18145 -23.17465 -23.02782 -21.76565 -21.04970 -19.17381 -18.21583 -17.71636 -17.05346 -16.38958 -15.67857 -15.55842 -15.43333 -14.31991 -14.12531 -13.72695 -13.48786 -13.24188 -12.54905 -12.22168 -12.19749 -11.96800 -11.65328 -11.55286 -11.49245 -11.43230 -11.10325 -10.85746 -10.82401 -10.75688 -10.64450 -10.49309 -10.27791 -10.23657 -10.07681 -9.82933 -9.14588 -8.91484 -8.19214 -7.50557 -5.82486 -3.79577 2.26657 3.01966 3.46282 3.49000 3.54537 4.24008 4.37881 4.62470 4.70245 4.79645 5.06416 5.14645 5.29640 5.35854 5.50260 5.55183 5.57298 5.67621 5.70493 5.77063 5.79680 5.82989 5.91113 5.99649 6.00424 6.11448 6.25931 6.32202 6.36489 6.44393 6.48862 6.56020 6.66127 7.07508 7.49940 7.59208 7.87775 7.93939 8.05474 8.17962 8.65239 9.25393 9.81714 11.29580 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020649 B = 0.006636 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.661794 B = 4218.270345 C = 4982.030418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.076 3.924 3 H 0.071 0.929 4 C 0.037 3.963 5 C -0.488 4.488 6 H 0.057 0.943 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.477 5.477 14 C 0.026 3.974 15 C -0.105 4.105 16 C -0.063 4.063 17 C 0.497 3.503 18 O -0.504 6.504 19 O -0.517 6.517 20 C -0.102 4.102 21 C -0.131 4.131 22 C -0.177 4.177 23 C 0.079 3.921 24 H 0.107 0.893 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.257 0.743 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.406 0.594 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.857 2.817 16.626 19.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.031 4.031 3 H 0.089 0.911 4 C 0.000 4.000 5 C -0.527 4.527 6 H 0.075 0.925 7 C -0.148 4.148 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.200 5.200 14 C -0.102 4.102 15 C -0.143 4.143 16 C -0.065 4.065 17 C 0.339 3.661 18 O -0.391 6.391 19 O -0.328 6.328 20 C -0.140 4.140 21 C -0.167 4.167 22 C -0.215 4.215 23 C -0.030 4.030 24 H 0.125 0.875 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.264 0.736 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.364 2.632 15.950 18.201 hybrid contribution 0.973 0.349 0.513 1.154 sum -7.391 2.981 16.463 18.291 Atomic orbital electron populations 1.23077 0.99219 1.02000 1.01808 1.22111 0.90514 0.98227 0.92292 0.91121 1.19083 0.96137 0.95377 0.89408 1.21126 0.91945 1.32860 1.06754 0.92469 1.24975 0.97886 0.95903 0.96047 1.69958 1.35208 1.37038 1.12410 0.86720 0.86572 0.77989 0.77051 1.20385 1.21665 1.20533 1.65080 1.42205 1.10864 1.01860 1.23501 0.95508 0.97809 0.93382 1.22590 1.01543 0.93259 0.96863 1.21831 0.91667 0.99623 0.93384 1.23084 0.89068 0.73910 0.80076 1.90725 1.30342 1.42798 1.75201 1.84544 1.46763 1.71410 1.30121 1.22451 0.94339 0.99416 0.97792 1.22795 0.97693 1.00061 0.96201 1.23566 0.95907 0.98904 1.03116 1.23088 1.00351 0.91566 0.88010 0.87540 0.92326 0.91577 0.92656 0.96472 0.96498 0.93356 0.92389 0.89725 0.90334 0.90643 0.73633 0.90405 0.91437 0.91273 0.90151 0.91636 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.24 6.90 37.15 0.26 -2.98 16 2 C 0.08 1.52 1.78 -67.72 -0.12 1.40 16 3 H 0.07 1.44 6.42 -51.92 -0.33 1.11 16 4 C 0.04 0.95 4.65 -27.88 -0.13 0.82 16 5 C -0.49 -14.05 8.84 -34.44 -0.30 -14.36 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 7 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 8 N -0.91 -27.80 13.29 55.43 0.74 -27.06 16 9 Si 0.89 22.81 29.54 -169.99 -5.02 17.79 16 10 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 N -0.48 -9.07 4.85 -213.64 -1.04 -10.10 16 14 C 0.03 0.40 5.22 -1.93 -0.01 0.39 16 15 C -0.10 -1.41 6.08 -24.92 -0.15 -1.56 16 16 C -0.06 -0.87 0.95 -153.34 -0.15 -1.02 16 17 C 0.50 7.15 7.00 36.00 0.25 7.40 16 18 O -0.50 -9.03 16.23 -18.75 -0.30 -9.33 16 19 O -0.52 -5.54 13.42 -39.27 -0.53 -6.07 16 20 C -0.10 -1.10 5.85 -24.94 -0.15 -1.25 16 21 C -0.13 -1.43 5.78 -24.59 -0.14 -1.57 16 22 C -0.18 -2.42 5.35 -25.15 -0.13 -2.55 16 23 C 0.08 1.30 3.54 -65.72 -0.23 1.07 16 24 H 0.11 2.06 6.76 -51.93 -0.35 1.71 16 25 H 0.06 0.93 6.63 -51.93 -0.34 0.59 16 26 H 0.07 0.88 2.87 -51.93 -0.15 0.74 16 27 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.06 0.81 3.64 -51.93 -0.19 0.62 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.08 0.84 7.41 -51.93 -0.38 0.46 16 34 H 0.07 1.10 7.94 -51.93 -0.41 0.68 16 35 H 0.41 2.63 9.10 45.56 0.41 3.05 16 36 H 0.08 0.72 7.43 -51.93 -0.39 0.34 16 37 H 0.07 0.69 7.98 -51.93 -0.41 0.28 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.88 4.64 -51.93 -0.24 0.64 16 40 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 41 H 0.10 1.51 3.49 -51.93 -0.18 1.33 16 LS Contribution 305.27 15.07 4.60 4.60 Total: -1.00 -33.44 305.27 -7.71 -41.15 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.05 Total: 1.81 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -1.11 Total: -12.79 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.30 Total: -37.17 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.83 Total: -15.40 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.44 -7.71 -41.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711618968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.328 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds