Wall clock time and date at job start Mon Mar 30 2020 06:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09009 * 109.47113 * 2 1 4 4 C 1.53007 * 109.47210 * 240.00416 * 2 1 3 5 5 C 1.50703 * 109.47063 * 174.99937 * 4 2 1 6 6 H 1.08000 * 119.99794 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99877 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99719 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99752 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47397 * 60.00047 * 9 7 5 11 11 H 1.48505 * 109.46959 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47374 * 299.99462 * 9 7 5 13 13 N 1.46898 * 109.47289 * 120.00045 * 2 1 3 14 14 C 1.48514 * 110.99753 * 28.01454 * 13 2 1 15 15 C 1.54904 * 103.21109 * 199.95977 * 14 13 2 16 16 C 1.54544 * 103.04378 * 37.46901 * 15 14 13 17 17 C 1.50696 * 111.84891 * 216.67563 * 16 15 14 18 18 O 1.20823 * 120.00673 * 117.51476 * 17 16 15 19 19 O 1.34235 * 119.99863 * 297.51496 * 17 16 15 20 20 C 1.54203 * 108.69036 * 91.80195 * 16 15 14 21 21 C 1.55200 * 104.30971 * 271.25886 * 20 16 15 22 22 C 1.54850 * 102.58141 * 321.83232 * 21 20 16 23 23 C 1.47820 * 111.00123 * 270.56938 * 13 2 1 24 24 H 1.08994 * 111.20903 * 268.46768 * 23 13 2 25 25 H 1.08997 * 109.47263 * 176.21260 * 1 2 3 26 26 H 1.08998 * 109.47347 * 296.21233 * 1 2 3 27 27 H 1.09009 * 109.47598 * 56.21448 * 1 2 3 28 28 H 1.09003 * 109.46714 * 294.99795 * 4 2 1 29 29 H 1.08997 * 109.47029 * 54.99636 * 4 2 1 30 30 H 0.97004 * 119.99100 * 179.97438 * 8 7 5 31 31 H 1.08998 * 110.66927 * 318.38774 * 14 13 2 32 32 H 1.08999 * 110.66982 * 81.36197 * 14 13 2 33 33 H 1.09003 * 110.69962 * 155.85963 * 15 14 13 34 34 H 1.08999 * 110.70239 * 279.07234 * 15 14 13 35 35 H 0.96696 * 116.99941 * 179.97438 * 19 17 16 36 36 H 1.09003 * 110.46999 * 29.95060 * 20 16 15 37 37 H 1.08999 * 110.47404 * 152.43380 * 20 16 15 38 38 H 1.08992 * 110.89620 * 203.53556 * 21 20 16 39 39 H 1.09005 * 110.76321 * 80.06175 * 21 20 16 40 40 H 1.09008 * 110.45916 * 279.27149 * 22 21 20 41 41 H 1.09001 * 110.46122 * 156.82360 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0861 -0.5392 7 6 4.2304 -1.1933 -2.3579 8 7 3.5764 -1.8384 -3.2991 9 14 6.0921 -1.0621 -2.4361 10 1 6.6838 -1.6881 -1.2265 11 1 6.5872 -1.7630 -3.6481 12 1 6.4854 0.3686 -2.4958 13 7 2.0196 -0.6925 1.1994 14 6 1.0430 -1.7114 1.6617 15 6 1.4461 -1.9435 3.1392 16 6 1.8453 -0.5293 3.6181 17 6 3.0110 -0.5686 4.5723 18 8 4.0503 -0.0267 4.2792 19 8 2.8946 -1.2058 5.7481 20 6 0.6048 0.1544 4.2278 21 6 -0.0779 0.8552 3.0230 22 6 1.1307 1.3702 2.2032 23 6 2.1833 0.2505 2.3259 24 1 3.1931 0.6598 2.3540 25 1 -0.3633 -1.0254 -0.0679 26 1 -0.3634 0.4539 0.9219 27 1 -0.3634 0.5715 -0.8542 28 1 1.7516 -1.7715 -1.2057 29 1 1.6053 -0.2617 -2.1370 30 1 4.0609 -2.2451 -4.0345 31 1 0.0253 -1.3263 1.5965 32 1 1.1431 -2.6302 1.0840 33 1 0.6006 -2.3208 3.7145 34 1 2.2934 -2.6260 3.2048 35 1 3.6694 -1.2043 6.3267 36 1 -0.0631 -0.5877 4.6652 37 1 0.9032 0.8868 4.9779 38 1 -0.6998 1.6854 3.3576 39 1 -0.6632 0.1423 2.4421 40 1 1.5112 2.2992 2.6280 41 1 0.8493 1.5162 1.1603 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711618968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:40 Heat of formation + Delta-G solvation = -87.481704 kcal Electronic energy + Delta-G solvation = -22134.982209 eV Core-core repulsion = 19014.485038 eV Total energy + Delta-G solvation = -3120.497171 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.55657 -40.63283 -37.14074 -36.79779 -34.67304 -33.91669 -31.34021 -29.95165 -28.58402 -27.41051 -25.06668 -24.10469 -23.25266 -22.08203 -20.33217 -19.58233 -18.82328 -18.43804 -18.15377 -17.14914 -16.88752 -16.57762 -16.36341 -15.20303 -14.89192 -14.63018 -14.53009 -14.20963 -13.79574 -13.59375 -13.31767 -13.17795 -12.94129 -12.75737 -12.68430 -12.59916 -12.48532 -12.15088 -12.05231 -11.96264 -11.88378 -11.80414 -11.53912 -11.36534 -11.20985 -11.03714 -10.87894 -10.49263 -8.89438 -8.11962 -6.15967 1.16306 1.36490 1.39593 1.47375 2.04468 2.44511 3.10852 3.18441 3.25958 3.63123 3.67847 4.08126 4.14270 4.22575 4.26225 4.35534 4.40762 4.52173 4.54570 4.58218 4.69344 4.80604 4.84289 4.93760 5.01409 5.03715 5.08269 5.13999 5.18781 5.27217 5.32143 5.35426 5.41937 5.48932 5.57553 5.69813 5.87824 6.29092 6.34775 6.54305 6.97294 6.97945 7.49137 8.99785 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020649 B = 0.006636 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.661794 B = 4218.270345 C = 4982.030418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.088 3.912 3 H 0.060 0.940 4 C 0.043 3.957 5 C -0.501 4.501 6 H 0.047 0.953 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.951 3.049 10 H -0.279 1.279 11 H -0.281 1.281 12 H -0.271 1.271 13 N -0.516 5.516 14 C 0.025 3.975 15 C -0.096 4.096 16 C -0.063 4.063 17 C 0.501 3.499 18 O -0.551 6.551 19 O -0.501 6.501 20 C -0.093 4.093 21 C -0.122 4.122 22 C -0.175 4.175 23 C 0.073 3.927 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.056 0.944 28 H -0.010 1.010 29 H -0.007 1.007 30 H 0.259 0.741 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.118 0.882 34 H 0.057 0.943 35 H 0.426 0.574 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.439 3.116 19.050 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.020 4.020 3 H 0.078 0.922 4 C 0.006 3.994 5 C -0.540 4.540 6 H 0.065 0.935 7 C -0.198 4.198 8 N -0.579 5.579 9 Si 0.777 3.223 10 H -0.204 1.204 11 H -0.206 1.206 12 H -0.196 1.196 13 N -0.239 5.239 14 C -0.102 4.102 15 C -0.134 4.134 16 C -0.065 4.065 17 C 0.344 3.656 18 O -0.441 6.441 19 O -0.314 6.314 20 C -0.131 4.131 21 C -0.159 4.159 22 C -0.213 4.213 23 C -0.036 4.036 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.118 0.882 27 H 0.075 0.925 28 H 0.008 0.992 29 H 0.011 0.989 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.137 0.863 34 H 0.076 0.924 35 H 0.287 0.713 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.954 2.923 18.411 21.133 hybrid contribution 1.528 0.224 -0.214 1.559 sum -8.426 3.148 18.197 20.299 Atomic orbital electron populations 1.22968 0.95848 1.02477 1.03681 1.21746 0.93143 0.96565 0.90573 0.92201 1.18950 0.94617 0.94181 0.91700 1.21445 0.93788 1.32405 1.06335 0.93476 1.25780 1.02545 0.95692 0.95815 1.70072 1.36956 1.37892 1.12997 0.85724 0.81077 0.78391 0.77132 1.20440 1.20632 1.19573 1.64780 1.44187 1.12374 1.02575 1.23530 0.96152 0.96002 0.94520 1.22594 1.02341 0.92877 0.95606 1.21832 0.92869 0.99538 0.92239 1.23218 0.88451 0.73113 0.80777 1.90720 1.32034 1.44979 1.76346 1.84483 1.47845 1.70046 1.29010 1.22488 0.92846 1.00050 0.97686 1.22782 0.96475 1.00985 0.95657 1.23490 0.96498 0.98168 1.03150 1.22952 0.99343 0.92548 0.88769 0.91677 0.92215 0.88222 0.92531 0.99166 0.98858 0.93197 0.89856 0.92066 0.86331 0.92399 0.71313 0.87503 0.90518 0.88524 0.89758 0.91128 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.93 6.90 71.98 0.50 -5.43 16 2 C 0.09 3.60 1.78 44.91 0.08 3.68 16 3 H 0.06 2.53 6.42 -2.38 -0.02 2.52 16 4 C 0.04 2.31 4.65 29.85 0.14 2.45 16 5 C -0.50 -30.05 8.84 25.60 0.23 -29.82 16 6 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 7 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 8 N -0.94 -59.19 13.29 21.45 0.28 -58.90 16 9 Si 0.95 47.92 29.54 68.60 2.03 49.94 16 10 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 11 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 12 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 13 N -0.52 -19.96 4.85 -829.83 -4.02 -23.98 16 14 C 0.03 0.77 5.22 86.64 0.45 1.22 16 15 C -0.10 -2.38 6.08 31.77 0.19 -2.19 16 16 C -0.06 -1.60 0.95 -51.43 -0.05 -1.65 16 17 C 0.50 13.75 7.00 71.23 0.50 14.24 16 18 O -0.55 -19.97 16.23 21.97 0.36 -19.61 16 19 O -0.50 -9.34 13.42 -51.46 -0.69 -10.03 16 20 C -0.09 -1.59 5.85 31.76 0.19 -1.41 16 21 C -0.12 -2.14 5.78 31.98 0.18 -1.96 16 22 C -0.17 -4.50 5.35 31.62 0.17 -4.33 16 23 C 0.07 2.40 3.54 45.70 0.16 2.56 16 24 H 0.07 2.67 6.76 -2.39 -0.02 2.65 16 25 H 0.06 1.83 6.63 -2.39 -0.02 1.81 16 26 H 0.10 2.39 2.87 -2.39 -0.01 2.39 16 27 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 28 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 29 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 31 H 0.08 2.10 3.64 -2.39 -0.01 2.09 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.12 1.99 7.41 -2.39 -0.02 1.97 16 34 H 0.06 1.62 7.94 -2.39 -0.02 1.61 16 35 H 0.43 4.43 9.10 -74.06 -0.67 3.76 16 36 H 0.11 1.30 7.43 -2.39 -0.02 1.28 16 37 H 0.08 1.22 7.98 -2.39 -0.02 1.20 16 38 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 1.43 4.64 -2.38 -0.01 1.42 16 40 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.09 2.58 3.49 -2.39 -0.01 2.57 16 Total: -1.00 -76.50 305.27 1.54 -74.96 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.38 Total: 9.91 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 3.20 Total: -22.30 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -3.74 Total: -82.88 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.33 Total: -29.64 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.94 kcal Total: -76.50 1.54 -74.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711618968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.520 kcal (2) G-P(sol) polarization free energy of solvation -76.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds