Wall clock time and date at job start Mon Mar 30 2020 06:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99795 * 2 1 4 4 H 1.48497 * 109.47021 * 270.00126 * 3 2 1 5 5 H 1.48493 * 109.47194 * 30.00464 * 3 2 1 6 6 H 1.48505 * 109.46712 * 150.00420 * 3 2 1 7 7 C 1.37877 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99919 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00223 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47327 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.46915 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46918 * 179.97438 * 11 10 9 13 13 C 1.50156 * 111.00193 * 56.11162 * 12 11 10 14 14 C 1.55898 * 106.32911 * 145.82271 * 13 12 11 15 15 C 1.50962 * 102.90510 * 5.79920 * 14 13 12 16 16 C 1.50706 * 110.00823 * 82.54236 * 15 14 13 17 17 O 1.20825 * 119.99859 * 250.73886 * 16 15 14 18 18 O 1.34224 * 120.00295 * 70.74845 * 16 15 14 19 19 C 1.50661 * 123.90257 * 215.65807 * 15 14 13 20 20 C 1.56539 * 103.94747 * 145.95472 * 19 15 14 21 21 C 1.56260 * 105.89028 * 352.34716 * 20 19 15 22 22 C 1.44516 * 111.00162 * 169.99875 * 12 11 10 23 23 H 1.09006 * 109.95917 * 309.30359 * 22 12 11 24 24 H 0.96994 * 120.00239 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46426 * 59.99701 * 9 7 2 26 26 H 1.08999 * 109.46550 * 300.00278 * 9 7 2 27 27 H 1.08995 * 109.47144 * 59.99651 * 10 9 7 28 28 H 1.09001 * 109.47017 * 300.00120 * 10 9 7 29 29 H 1.08999 * 109.47386 * 60.00293 * 11 10 9 30 30 H 1.09001 * 109.47291 * 299.99848 * 11 10 9 31 31 H 1.08996 * 110.08526 * 265.04383 * 13 12 11 32 32 H 1.09006 * 110.08329 * 26.55082 * 13 12 11 33 33 H 1.08997 * 110.73217 * 247.44382 * 14 13 12 34 34 H 1.08998 * 110.72756 * 124.14905 * 14 13 12 35 35 H 0.96700 * 117.00196 * 179.97438 * 18 16 15 36 36 H 1.08996 * 110.46621 * 264.04917 * 19 15 14 37 37 H 1.09002 * 110.46110 * 26.63954 * 19 15 14 38 38 H 1.08995 * 109.81117 * 233.42126 * 20 19 15 39 39 H 1.09004 * 110.57688 * 111.67349 * 20 19 15 40 40 H 1.09004 * 110.95646 * 217.41308 * 21 20 19 41 41 H 1.09003 * 110.95992 * 93.68155 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0010 11 6 5.5515 -2.6365 -0.0009 12 7 6.0412 -4.0215 -0.0002 13 6 5.4837 -4.7901 -1.1635 14 6 6.5971 -5.7889 -1.6030 15 6 7.6560 -5.6008 -0.5436 16 6 7.3155 -6.4173 0.6765 17 8 6.9594 -5.8671 1.6915 18 8 7.4081 -7.7557 0.6356 19 6 9.1366 -5.6702 -0.8137 20 6 9.7502 -4.6241 0.1761 21 6 8.5359 -3.8777 0.8165 22 6 7.4665 -4.0671 -0.2344 23 1 7.7177 -3.4775 -1.1162 24 1 -0.4850 0.8400 0.0004 25 1 3.8751 -0.6804 0.8888 26 1 3.8745 -0.6800 -0.8911 27 1 3.6579 -3.1506 -0.8906 28 1 3.6586 -3.1502 0.8892 29 1 5.9148 -2.1227 0.8890 30 1 5.9148 -2.1228 -0.8910 31 1 4.5907 -5.3355 -0.8584 32 1 5.2453 -4.1102 -1.9816 33 1 6.9849 -5.5258 -2.5871 34 1 6.2220 -6.8122 -1.5960 35 1 7.1797 -8.2365 1.4430 36 1 9.5184 -6.6664 -0.5904 37 1 9.3480 -5.4032 -1.8492 38 1 10.3773 -3.9209 -0.3718 39 1 10.3339 -5.1244 0.9489 40 1 8.7594 -2.8204 0.9591 41 1 8.2443 -4.3435 1.7578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711676948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:00 Heat of formation + Delta-G solvation = -78.814237 kcal Electronic energy + Delta-G solvation = -21288.942890 eV Core-core repulsion = 18168.821569 eV Total energy + Delta-G solvation = -3120.121321 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.73135 -38.87826 -36.14707 -35.79834 -33.79371 -32.41593 -31.05115 -28.08440 -27.38167 -25.94185 -23.69033 -22.90655 -21.47716 -20.24312 -19.84569 -19.35790 -17.69493 -16.77713 -16.65575 -15.93652 -15.46644 -15.22932 -14.48509 -14.33085 -14.17765 -13.95239 -13.55164 -12.93059 -12.80339 -12.49730 -12.37478 -12.20044 -11.75535 -11.65437 -11.54388 -11.36641 -11.20179 -11.01484 -10.81475 -10.64645 -10.56297 -10.42145 -10.03089 -9.90462 -9.64974 -9.50054 -9.12736 -8.50043 -8.20359 -6.00466 -3.97935 2.36177 2.93011 3.32742 3.40166 3.44691 3.61435 4.12525 4.41565 4.48619 4.66710 4.83625 4.88880 4.99899 5.15758 5.23033 5.26852 5.33568 5.45736 5.48982 5.58147 5.65286 5.68747 5.69720 5.73780 5.86251 5.92261 6.03984 6.08038 6.19565 6.26874 6.55076 6.59685 6.67070 6.87962 7.08347 7.30696 7.40152 7.50589 7.84340 8.01282 8.59118 9.05123 9.62330 11.13219 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.032486 B = 0.004250 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.693948 B = 6587.322024 C = 6921.837893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.044 3.956 12 N -0.486 5.486 13 C 0.028 3.972 14 C -0.113 4.113 15 C -0.069 4.069 16 C 0.491 3.509 17 O -0.476 6.476 18 O -0.524 6.524 19 C -0.106 4.106 20 C -0.124 4.124 21 C -0.122 4.122 22 C 0.076 3.924 23 H 0.054 0.946 24 H 0.262 0.738 25 H 0.016 0.984 26 H 0.008 0.992 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.029 0.971 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.405 0.595 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.150 -13.667 -2.647 25.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.083 4.083 12 N -0.209 5.209 13 C -0.100 4.100 14 C -0.151 4.151 15 C -0.071 4.071 16 C 0.331 3.669 17 O -0.360 6.360 18 O -0.337 6.337 19 C -0.144 4.144 20 C -0.162 4.162 21 C -0.160 4.160 22 C -0.035 4.035 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.026 0.974 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.264 0.736 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 20.821 -13.374 -2.177 24.842 hybrid contribution 0.293 1.053 -0.310 1.136 sum 21.114 -12.321 -2.486 24.572 Atomic orbital electron populations 1.69918 1.06298 1.26802 1.51443 1.25036 0.94723 0.99146 0.94656 0.86769 0.80412 0.83657 0.78396 1.20397 1.21405 1.19016 1.21150 0.89523 0.94432 1.50431 0.91076 1.19548 0.97158 0.92299 0.96066 1.21495 0.90927 0.99701 1.01613 1.22509 0.98129 0.87365 1.00329 1.64757 1.02784 1.14184 1.39184 1.23805 0.97759 0.95754 0.92640 1.21997 0.94609 1.01041 0.97462 1.21217 0.96668 0.96245 0.92928 1.22855 0.73974 0.80292 0.89761 1.90702 1.40718 1.71644 1.32922 1.84502 1.82281 1.21436 1.45487 1.21793 0.91419 1.00443 1.00723 1.23062 0.97732 0.97412 0.98024 1.22127 0.92945 1.00959 0.99956 1.22578 0.90674 0.92210 0.97991 0.92831 0.92805 0.96600 0.97353 0.92919 0.91933 0.90845 0.95230 0.89693 0.92213 0.89835 0.89971 0.73634 0.90523 0.89941 0.91167 0.91332 0.91310 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.54 13.96 55.43 0.77 -27.76 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.22 27.47 -169.99 -4.67 17.56 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.52 -15.20 9.66 -34.44 -0.33 -15.54 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -2.07 4.98 -26.74 -0.13 -2.21 16 11 C 0.04 0.77 4.93 -3.83 -0.02 0.75 16 12 N -0.49 -7.57 4.19 -221.85 -0.93 -8.50 16 13 C 0.03 0.38 5.26 -0.45 0.00 0.37 16 14 C -0.11 -1.19 6.25 -26.21 -0.16 -1.35 16 15 C -0.07 -0.75 1.05 -155.34 -0.16 -0.92 16 16 C 0.49 6.08 5.79 36.01 0.21 6.28 16 17 O -0.48 -7.47 13.87 -18.75 -0.26 -7.73 16 18 O -0.52 -5.00 13.34 -39.24 -0.52 -5.52 16 19 C -0.11 -0.90 6.17 -26.00 -0.16 -1.06 16 20 C -0.12 -1.08 6.85 -23.07 -0.16 -1.24 16 21 C -0.12 -1.44 6.33 -25.92 -0.16 -1.60 16 22 C 0.08 0.97 1.75 -67.42 -0.12 0.85 16 23 H 0.05 0.66 7.93 -51.93 -0.41 0.25 16 24 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 25 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 26 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 27 H 0.05 1.08 6.83 -51.93 -0.35 0.72 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.03 0.49 7.93 -51.93 -0.41 0.08 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.81 7.41 -51.93 -0.38 0.43 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.81 7.94 -51.93 -0.41 0.40 16 35 H 0.41 2.32 9.10 45.56 0.41 2.74 16 36 H 0.08 0.60 7.90 -51.93 -0.41 0.19 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.10 1.37 5.73 -51.93 -0.30 1.07 16 LS Contribution 319.08 15.07 4.81 4.81 Total: -1.00 -33.91 319.08 -8.22 -42.13 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.00 Total: -0.75 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -1.42 Total: -14.23 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.16 Total: -36.26 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.78 Total: -13.25 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.91 -8.22 -42.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711676948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.680 kcal (2) G-P(sol) polarization free energy of solvation -33.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds