Wall clock time and date at job start Mon Mar 30 2020 06:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99795 * 2 1 4 4 H 1.48497 * 109.47021 * 270.00126 * 3 2 1 5 5 H 1.48493 * 109.47194 * 30.00464 * 3 2 1 6 6 H 1.48505 * 109.46712 * 150.00420 * 3 2 1 7 7 C 1.37877 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99919 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00223 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47327 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.46915 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46918 * 179.97438 * 11 10 9 13 13 C 1.50156 * 111.00193 * 56.11162 * 12 11 10 14 14 C 1.55898 * 106.32911 * 145.82271 * 13 12 11 15 15 C 1.50962 * 102.90510 * 5.79920 * 14 13 12 16 16 C 1.50706 * 110.00823 * 82.54236 * 15 14 13 17 17 O 1.20825 * 119.99859 * 250.73886 * 16 15 14 18 18 O 1.34224 * 120.00295 * 70.74845 * 16 15 14 19 19 C 1.50661 * 123.90257 * 215.65807 * 15 14 13 20 20 C 1.56539 * 103.94747 * 145.95472 * 19 15 14 21 21 C 1.56260 * 105.89028 * 352.34716 * 20 19 15 22 22 C 1.44516 * 111.00162 * 169.99875 * 12 11 10 23 23 H 1.09006 * 109.95917 * 309.30359 * 22 12 11 24 24 H 0.96994 * 120.00239 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46426 * 59.99701 * 9 7 2 26 26 H 1.08999 * 109.46550 * 300.00278 * 9 7 2 27 27 H 1.08995 * 109.47144 * 59.99651 * 10 9 7 28 28 H 1.09001 * 109.47017 * 300.00120 * 10 9 7 29 29 H 1.08999 * 109.47386 * 60.00293 * 11 10 9 30 30 H 1.09001 * 109.47291 * 299.99848 * 11 10 9 31 31 H 1.08996 * 110.08526 * 265.04383 * 13 12 11 32 32 H 1.09006 * 110.08329 * 26.55082 * 13 12 11 33 33 H 1.08997 * 110.73217 * 247.44382 * 14 13 12 34 34 H 1.08998 * 110.72756 * 124.14905 * 14 13 12 35 35 H 0.96700 * 117.00196 * 179.97438 * 18 16 15 36 36 H 1.08996 * 110.46621 * 264.04917 * 19 15 14 37 37 H 1.09002 * 110.46110 * 26.63954 * 19 15 14 38 38 H 1.08995 * 109.81117 * 233.42126 * 20 19 15 39 39 H 1.09004 * 110.57688 * 111.67349 * 20 19 15 40 40 H 1.09004 * 110.95646 * 217.41308 * 21 20 19 41 41 H 1.09003 * 110.95992 * 93.68155 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0010 11 6 5.5515 -2.6365 -0.0009 12 7 6.0412 -4.0215 -0.0002 13 6 5.4837 -4.7901 -1.1635 14 6 6.5971 -5.7889 -1.6030 15 6 7.6560 -5.6008 -0.5436 16 6 7.3155 -6.4173 0.6765 17 8 6.9594 -5.8671 1.6915 18 8 7.4081 -7.7557 0.6356 19 6 9.1366 -5.6702 -0.8137 20 6 9.7502 -4.6241 0.1761 21 6 8.5359 -3.8777 0.8165 22 6 7.4665 -4.0671 -0.2344 23 1 7.7177 -3.4775 -1.1162 24 1 -0.4850 0.8400 0.0004 25 1 3.8751 -0.6804 0.8888 26 1 3.8745 -0.6800 -0.8911 27 1 3.6579 -3.1506 -0.8906 28 1 3.6586 -3.1502 0.8892 29 1 5.9148 -2.1227 0.8890 30 1 5.9148 -2.1228 -0.8910 31 1 4.5907 -5.3355 -0.8584 32 1 5.2453 -4.1102 -1.9816 33 1 6.9849 -5.5258 -2.5871 34 1 6.2220 -6.8122 -1.5960 35 1 7.1797 -8.2365 1.4430 36 1 9.5184 -6.6664 -0.5904 37 1 9.3480 -5.4032 -1.8492 38 1 10.3773 -3.9209 -0.3718 39 1 10.3339 -5.1244 0.9489 40 1 8.7594 -2.8204 0.9591 41 1 8.2443 -4.3435 1.7578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711676948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:00 Heat of formation + Delta-G solvation = -102.337611 kcal Electronic energy + Delta-G solvation = -21289.962940 eV Core-core repulsion = 18168.821569 eV Total energy + Delta-G solvation = -3121.141371 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.65184 -39.84672 -37.28155 -36.80211 -35.48188 -33.99630 -32.56110 -29.42581 -28.27948 -27.36825 -24.64902 -24.39944 -22.72630 -21.60489 -20.82523 -20.50248 -18.87922 -18.59499 -17.71747 -16.84801 -16.66341 -16.45141 -16.09447 -15.51095 -15.19939 -15.15767 -14.81647 -14.57561 -13.91852 -13.85081 -13.61615 -13.38227 -13.11229 -12.99120 -12.61242 -12.51550 -12.37387 -12.16989 -12.11490 -11.86217 -11.80160 -11.61857 -11.51626 -11.36225 -11.26287 -11.04690 -10.96332 -10.78022 -9.34240 -8.31140 -6.35820 1.33891 1.36987 1.43361 1.49321 2.13049 2.35183 2.71836 3.03894 3.07348 3.59535 3.84294 4.03065 4.05798 4.15393 4.18605 4.26658 4.34954 4.40680 4.50253 4.55583 4.61970 4.68800 4.77222 4.86307 4.90073 4.95749 4.97769 5.04403 5.04838 5.12417 5.18973 5.29021 5.41797 5.47716 5.55701 5.63716 5.78587 5.89405 6.18393 6.28434 6.71830 7.17770 7.28780 8.86081 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.032486 B = 0.004250 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.693948 B = 6587.322024 C = 6921.837893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.955 3.045 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.248 1.248 7 C -0.535 4.535 8 H 0.027 0.973 9 C -0.008 4.008 10 C -0.088 4.088 11 C 0.057 3.943 12 N -0.507 5.507 13 C 0.022 3.978 14 C -0.103 4.103 15 C -0.063 4.063 16 C 0.490 3.510 17 O -0.518 6.518 18 O -0.516 6.516 19 C -0.100 4.100 20 C -0.117 4.117 21 C -0.126 4.126 22 C 0.064 3.936 23 H 0.067 0.933 24 H 0.267 0.733 25 H 0.017 0.983 26 H 0.022 0.978 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.421 0.579 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.367 -13.443 -4.086 28.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.172 1.172 7 C -0.573 4.573 8 H 0.045 0.955 9 C -0.046 4.046 10 C -0.126 4.126 11 C -0.070 4.070 12 N -0.231 5.231 13 C -0.105 4.105 14 C -0.141 4.141 15 C -0.065 4.065 16 C 0.332 3.668 17 O -0.406 6.406 18 O -0.330 6.330 19 C -0.137 4.137 20 C -0.155 4.155 21 C -0.164 4.164 22 C -0.046 4.046 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.035 0.965 26 H 0.040 0.960 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.282 0.718 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 24.058 -13.200 -3.621 27.679 hybrid contribution -0.814 0.848 0.191 1.191 sum 23.244 -12.352 -3.430 26.544 Atomic orbital electron populations 1.70076 1.08383 1.28249 1.52637 1.26068 0.95667 1.03692 0.93946 0.85589 0.79386 0.77863 0.79394 1.18707 1.20839 1.17163 1.21484 0.92175 0.93034 1.50575 0.95481 1.19477 0.93882 0.94767 0.96468 1.21292 0.93831 0.97099 1.00394 1.22230 0.95053 0.89127 1.00636 1.64664 1.04967 1.12800 1.40621 1.23838 0.98473 0.96280 0.91958 1.21979 0.93183 1.00380 0.98513 1.21313 0.98483 0.94445 0.92211 1.23265 0.72886 0.80970 0.89692 1.90703 1.42735 1.72541 1.34584 1.84461 1.81707 1.20284 1.46561 1.21853 0.88971 1.00933 1.01963 1.23039 0.96514 0.97632 0.98293 1.22139 0.94158 1.01204 0.98896 1.22707 0.88976 0.94116 0.98774 0.91556 0.92429 0.96463 0.95978 0.93086 0.94314 0.91495 0.93872 0.91645 0.92256 0.87011 0.89270 0.71780 0.89532 0.87524 0.89217 0.90837 0.91328 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.57 13.96 21.45 0.30 -61.27 16 2 C 0.00 0.17 5.47 84.65 0.46 0.63 16 3 Si 0.95 45.43 27.47 68.60 1.88 47.31 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 7 C -0.53 -32.39 9.66 25.60 0.25 -32.14 16 8 H 0.03 1.81 7.99 -2.91 -0.02 1.78 16 9 C -0.01 -0.40 4.04 29.85 0.12 -0.27 16 10 C -0.09 -3.75 4.98 30.59 0.15 -3.60 16 11 C 0.06 1.97 4.93 86.30 0.43 2.40 16 12 N -0.51 -15.57 4.19 -855.81 -3.58 -19.16 16 13 C 0.02 0.57 5.26 86.67 0.46 1.03 16 14 C -0.10 -1.88 6.25 30.93 0.19 -1.69 16 15 C -0.06 -1.22 1.05 -52.72 -0.06 -1.27 16 16 C 0.49 11.52 5.79 71.24 0.41 11.93 16 17 O -0.52 -16.40 13.87 21.97 0.30 -16.10 16 18 O -0.52 -8.87 13.34 -51.35 -0.68 -9.56 16 19 C -0.10 -1.29 6.17 31.07 0.19 -1.10 16 20 C -0.12 -1.68 6.85 32.96 0.23 -1.45 16 21 C -0.13 -2.80 6.33 31.12 0.20 -2.61 16 22 C 0.06 1.52 1.75 46.38 0.08 1.60 16 23 H 0.07 1.43 7.93 -2.38 -0.02 1.41 16 24 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 25 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 26 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 27 H 0.05 2.14 6.83 -2.39 -0.02 2.13 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.04 1.35 7.93 -2.39 -0.02 1.34 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.06 1.55 7.41 -2.38 -0.02 1.53 16 33 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.53 7.94 -2.39 -0.02 1.51 16 35 H 0.42 4.23 9.10 -74.06 -0.67 3.55 16 36 H 0.09 1.00 7.90 -2.39 -0.02 0.98 16 37 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.99 5.73 -2.39 -0.01 1.98 16 Total: -1.00 -75.82 319.08 1.61 -74.21 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.28 Total: 11.10 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 3.11 Total: -26.54 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -3.28 Total: -80.43 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.38 Total: -25.65 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.31 kcal Total: -75.82 1.61 -74.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711676948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.129 kcal (2) G-P(sol) polarization free energy of solvation -75.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds