Wall clock time and date at job start Mon Mar 30 2020 06:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00089 * 2 1 4 4 H 1.48498 * 109.47236 * 269.99623 * 3 2 1 5 5 H 1.48496 * 109.47033 * 29.99881 * 3 2 1 6 6 H 1.48504 * 109.46863 * 149.99438 * 3 2 1 7 7 C 1.37874 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00354 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99974 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46907 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46793 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46933 * 180.02562 * 11 10 9 13 13 C 1.50154 * 110.99672 * 283.88530 * 12 11 10 14 14 C 1.54249 * 106.17249 * 214.24925 * 13 12 11 15 15 C 1.50960 * 103.69560 * 354.07304 * 14 13 12 16 16 C 1.50706 * 110.00912 * 277.80506 * 15 14 13 17 17 O 1.20825 * 119.99859 * 100.46374 * 16 15 14 18 18 O 1.34224 * 120.00295 * 280.47333 * 16 15 14 19 19 C 1.50646 * 124.37833 * 144.14934 * 15 14 13 20 20 C 1.55808 * 104.30848 * 215.18545 * 19 15 14 21 21 C 1.56271 * 105.86414 * 7.02036 * 20 19 15 22 22 C 1.44517 * 110.99809 * 169.99848 * 12 11 10 23 23 H 1.09000 * 109.38368 * 50.90727 * 22 12 11 24 24 H 0.97004 * 119.99682 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46370 * 60.00864 * 9 7 2 26 26 H 1.08995 * 109.46803 * 300.00759 * 9 7 2 27 27 H 1.08992 * 109.47383 * 60.00330 * 10 9 7 28 28 H 1.09004 * 109.47251 * 299.99877 * 10 9 7 29 29 H 1.08992 * 109.47267 * 59.99793 * 11 10 9 30 30 H 1.09004 * 109.46741 * 299.99723 * 11 10 9 31 31 H 1.08998 * 110.08792 * 333.38788 * 13 12 11 32 32 H 1.09000 * 110.08813 * 94.90316 * 13 12 11 33 33 H 1.08999 * 110.05114 * 235.59813 * 14 13 12 34 34 H 1.08999 * 110.64180 * 112.82998 * 14 13 12 35 35 H 0.96700 * 117.00196 * 179.97438 * 18 16 15 36 36 H 1.09003 * 110.47092 * 333.89200 * 19 15 14 37 37 H 1.09004 * 110.47174 * 96.47675 * 19 15 14 38 38 H 1.08997 * 110.17081 * 126.11828 * 20 19 15 39 39 H 1.08998 * 110.16828 * 247.84993 * 20 19 15 40 40 H 1.08999 * 110.95298 * 143.00449 * 21 20 19 41 41 H 1.08995 * 110.95761 * 266.73391 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5515 -2.6367 0.0022 12 7 6.0411 -4.0217 0.0015 13 6 5.9021 -4.6422 1.3618 14 6 7.1059 -5.5926 1.5255 15 6 7.7745 -5.5589 0.1724 16 6 7.0752 -6.5023 -0.7721 17 8 6.2867 -6.0732 -1.5808 18 8 7.3280 -7.8193 -0.7147 19 6 9.2642 -5.6249 -0.0422 20 6 9.5171 -4.7037 -1.2730 21 6 8.1483 -4.0148 -1.5795 22 6 7.4666 -4.0669 -0.2317 23 1 7.9675 -3.3857 0.4561 24 1 -0.4850 0.8401 -0.0004 25 1 3.8744 -0.6803 0.8912 26 1 3.8752 -0.6804 -0.8887 27 1 3.6585 -3.1502 -0.8892 28 1 3.6577 -3.1507 0.8908 29 1 5.9141 -2.1232 0.8926 30 1 5.9155 -2.1225 -0.8873 31 1 5.9278 -3.8695 2.1301 32 1 4.9685 -5.2012 1.4246 33 1 6.7585 -6.5990 1.7591 34 1 7.7815 -5.2273 2.2989 35 1 6.8550 -8.3848 -1.3404 36 1 9.7925 -5.2458 0.8326 37 1 9.5728 -6.6471 -0.2614 38 1 10.2700 -3.9532 -1.0323 39 1 9.8396 -5.2984 -2.1276 40 1 8.2944 -2.9842 -1.9029 41 1 7.5858 -4.5792 -2.3231 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711676949.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:02 Heat of formation + Delta-G solvation = -102.165045 kcal Electronic energy + Delta-G solvation = -21284.597519 eV Core-core repulsion = 18163.463631 eV Total energy + Delta-G solvation = -3121.133888 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.66586 -39.84465 -37.18824 -36.81886 -35.55344 -34.07250 -32.55401 -29.41858 -28.32187 -27.42931 -24.65745 -24.30936 -22.54917 -21.77380 -20.77768 -20.54338 -18.88061 -18.58735 -17.76516 -16.85802 -16.65221 -16.28298 -16.08543 -15.62821 -15.24661 -15.13427 -14.80952 -14.48857 -14.00360 -13.80590 -13.61208 -13.34075 -13.12027 -12.97375 -12.63933 -12.51581 -12.37834 -12.23678 -12.13295 -11.83226 -11.74362 -11.60472 -11.43298 -11.35684 -11.34270 -11.03712 -11.01077 -10.77941 -9.30083 -8.30799 -6.35637 1.34587 1.37028 1.43891 1.49361 2.13242 2.35537 2.70514 3.04122 3.08112 3.62342 3.83184 4.03405 4.06134 4.14111 4.21941 4.26234 4.35851 4.42787 4.51003 4.54665 4.66829 4.67837 4.77761 4.85414 4.90531 4.94880 4.97291 5.04994 5.05417 5.12100 5.20715 5.28091 5.40781 5.50062 5.56595 5.64472 5.78049 5.93302 6.19792 6.29561 6.72155 7.18742 7.28789 8.86627 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.032079 B = 0.004255 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.643384 B = 6579.082896 C = 6874.024718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.244 1.244 7 C -0.536 4.536 8 H 0.024 0.976 9 C -0.008 4.008 10 C -0.082 4.082 11 C 0.058 3.942 12 N -0.508 5.508 13 C 0.022 3.978 14 C -0.101 4.101 15 C -0.062 4.062 16 C 0.486 3.514 17 O -0.517 6.517 18 O -0.517 6.517 19 C -0.099 4.099 20 C -0.116 4.116 21 C -0.123 4.123 22 C 0.063 3.937 23 H 0.069 0.931 24 H 0.267 0.733 25 H 0.024 0.976 26 H 0.017 0.983 27 H 0.035 0.965 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.421 0.579 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.846 -12.849 2.287 28.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.167 1.167 7 C -0.573 4.573 8 H 0.042 0.958 9 C -0.046 4.046 10 C -0.120 4.120 11 C -0.070 4.070 12 N -0.231 5.231 13 C -0.105 4.105 14 C -0.139 4.139 15 C -0.064 4.064 16 C 0.328 3.672 17 O -0.404 6.404 18 O -0.330 6.330 19 C -0.137 4.137 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.047 4.047 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.133 0.867 35 H 0.281 0.719 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 25.365 -12.659 1.917 28.413 hybrid contribution -0.922 0.753 -0.129 1.197 sum 24.443 -11.906 1.789 27.247 Atomic orbital electron populations 1.70090 1.08444 1.28254 1.52665 1.26101 0.95697 1.03786 0.93906 0.85557 0.79504 0.77679 0.79276 1.19159 1.20664 1.16701 1.21497 0.92288 0.92968 1.50597 0.95760 1.19483 0.93797 0.94789 0.96486 1.21171 0.94158 0.96697 0.99981 1.22237 0.95162 0.88906 1.00721 1.64580 1.14626 1.17583 1.26299 1.23596 0.99313 0.97980 0.89599 1.21661 0.96371 1.00910 0.94965 1.21302 0.97346 0.93125 0.94580 1.23335 0.79397 0.81799 0.82667 1.90765 1.33840 1.78102 1.37697 1.84459 1.67511 1.19265 1.61810 1.21714 0.90064 1.01806 1.00109 1.22924 0.95820 0.98784 0.97893 1.22060 0.96447 1.01605 0.96010 1.22672 0.88718 0.94497 0.98772 0.91374 0.92431 0.95810 0.96442 0.94608 0.93910 0.93612 0.91392 0.91927 0.91789 0.89620 0.86698 0.71857 0.87595 0.89384 0.88980 0.90869 0.91109 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.18 13.96 21.45 0.30 -61.89 16 2 C 0.00 0.08 5.47 84.65 0.46 0.55 16 3 Si 0.96 45.63 27.47 68.60 1.88 47.51 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 6 H -0.24 -10.65 6.54 99.48 0.65 -10.00 16 7 C -0.54 -32.91 9.66 25.60 0.25 -32.66 16 8 H 0.02 1.65 7.99 -2.91 -0.02 1.63 16 9 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 10 C -0.08 -3.59 5.29 30.59 0.16 -3.43 16 11 C 0.06 1.98 4.80 86.30 0.41 2.39 16 12 N -0.51 -15.62 3.84 -859.20 -3.30 -18.92 16 13 C 0.02 0.57 5.99 86.09 0.52 1.09 16 14 C -0.10 -1.79 6.13 30.35 0.19 -1.61 16 15 C -0.06 -1.19 1.09 -52.72 -0.06 -1.24 16 16 C 0.49 11.62 5.81 71.24 0.41 12.03 16 17 O -0.52 -17.04 14.11 21.97 0.31 -16.73 16 18 O -0.52 -8.94 13.07 -51.35 -0.67 -9.61 16 19 C -0.10 -1.26 6.13 30.80 0.19 -1.07 16 20 C -0.12 -1.63 6.83 32.70 0.22 -1.41 16 21 C -0.12 -2.74 6.34 31.12 0.20 -2.54 16 22 C 0.06 1.49 1.71 46.38 0.08 1.57 16 23 H 0.07 1.41 8.06 -2.39 -0.02 1.39 16 24 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 25 H 0.02 1.13 7.20 -2.39 -0.02 1.11 16 26 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 27 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.04 1.89 7.75 -2.39 -0.02 1.87 16 29 H 0.05 1.43 7.67 -2.39 -0.02 1.41 16 30 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 31 H 0.06 1.51 7.53 -2.39 -0.02 1.50 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 1.43 7.96 -2.39 -0.02 1.41 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.42 4.37 9.10 -74.06 -0.67 3.70 16 36 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 1.01 7.68 -2.38 -0.02 0.99 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.74 6.08 -2.39 -0.01 1.72 16 Total: -1.00 -77.68 320.46 1.96 -75.72 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.28 Total: 10.50 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 3.15 Total: -26.59 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -3.00 Total: -80.80 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.36 Total: -26.35 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.51 kcal Total: -77.68 1.96 -75.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711676949.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.443 kcal (2) G-P(sol) polarization free energy of solvation -77.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds