Wall clock time and date at job start Mon Mar 30 2020 06:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00373 * 2 1 4 4 H 1.48505 * 109.47008 * 270.00306 * 3 2 1 5 5 H 1.48499 * 109.46886 * 29.99865 * 3 2 1 6 6 H 1.48496 * 109.47523 * 150.00316 * 3 2 1 7 7 C 1.37876 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00114 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46959 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47025 * 180.02562 * 11 10 9 13 13 C 1.48482 * 110.99795 * 307.59230 * 12 11 10 14 14 C 1.56406 * 103.66969 * 200.55122 * 13 12 11 15 15 C 1.54453 * 102.26548 * 36.86108 * 14 13 12 16 16 C 1.50697 * 111.69630 * 100.28910 * 15 14 13 17 17 O 1.20831 * 120.00340 * 241.36287 * 16 15 14 18 18 O 1.34229 * 119.99946 * 61.36935 * 16 15 14 19 19 C 1.54093 * 109.02199 * 224.17789 * 15 14 13 20 20 C 1.54847 * 104.50826 * 90.94835 * 19 15 14 21 21 C 1.55198 * 102.58014 * 37.77244 * 20 19 15 22 22 C 1.47919 * 110.99836 * 189.99938 * 12 11 10 23 23 H 1.08997 * 111.89990 * 23.44391 * 22 12 11 24 24 H 0.97001 * 119.99813 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47347 * 59.99958 * 9 7 2 26 26 H 1.08994 * 109.47160 * 299.99897 * 9 7 2 27 27 H 1.09000 * 109.46989 * 59.99828 * 10 9 7 28 28 H 1.09002 * 109.46835 * 299.99820 * 10 9 7 29 29 H 1.09000 * 109.47459 * 60.00057 * 11 10 9 30 30 H 1.09008 * 109.46995 * 299.99983 * 11 10 9 31 31 H 1.09007 * 110.66631 * 318.58558 * 13 12 11 32 32 H 1.09000 * 110.66818 * 81.71892 * 13 12 11 33 33 H 1.09000 * 110.65815 * 278.89585 * 14 13 12 34 34 H 1.08998 * 111.42737 * 155.16802 * 14 13 12 35 35 H 0.96690 * 117.00309 * 179.97438 * 18 16 15 36 36 H 1.09002 * 110.44920 * 209.74349 * 19 15 14 37 37 H 1.08996 * 110.44737 * 332.15806 * 19 15 14 38 38 H 1.09002 * 110.75677 * 156.15008 * 20 19 15 39 39 H 1.08999 * 110.76082 * 279.53278 * 20 19 15 40 40 H 1.09006 * 110.46869 * 202.85838 * 21 20 19 41 41 H 1.09001 * 110.47376 * 80.23616 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0025 12 7 2.4347 -6.1037 -0.0031 13 6 3.4231 -5.9580 -1.1015 14 6 3.9747 -7.4085 -1.2971 15 6 2.7161 -8.2725 -1.0630 16 6 2.0998 -8.7228 -2.3624 17 8 0.9730 -8.3899 -2.6441 18 8 2.8027 -9.4938 -3.2069 19 6 3.0877 -9.4683 -0.1649 20 6 2.8273 -8.9664 1.2766 21 6 1.5467 -8.1058 1.1088 22 6 1.7454 -7.3902 -0.2435 23 1 0.7972 -7.2525 -0.7633 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8896 27 1 2.8725 -3.6048 0.8877 28 1 2.8711 -3.6040 -0.8923 29 1 0.8531 -5.0442 -0.8922 30 1 0.8538 -5.0455 0.8878 31 1 2.9359 -5.6159 -2.0146 32 1 4.2224 -5.2759 -0.8118 33 1 4.7399 -7.6324 -0.5538 34 1 4.3608 -7.5550 -2.3058 35 1 2.3653 -9.7578 -4.0278 36 1 2.4531 -10.3255 -0.3902 37 1 4.1381 -9.7291 -0.2934 38 1 2.6471 -9.8039 1.9506 39 1 3.6591 -8.3569 1.6297 40 1 1.4675 -7.3788 1.9171 41 1 0.6617 -8.7412 1.0779 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711676951.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:08 Heat of formation + Delta-G solvation = -106.727345 kcal Electronic energy + Delta-G solvation = -21019.363939 eV Core-core repulsion = 17898.032214 eV Total energy + Delta-G solvation = -3121.331725 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.24896 -39.12725 -36.29896 -35.69581 -33.48512 -32.26839 -30.86286 -28.01294 -27.58390 -25.49535 -23.39832 -22.97439 -21.61398 -20.68797 -19.72910 -19.03763 -17.98254 -17.12681 -16.19319 -15.91715 -15.16606 -15.07716 -14.85689 -14.46823 -14.36277 -14.04721 -13.46034 -12.81084 -12.38088 -12.28927 -12.27027 -11.83766 -11.70546 -11.54761 -11.25486 -11.19887 -11.12418 -11.01701 -10.97552 -10.77639 -10.63309 -10.51273 -10.39483 -10.30662 -9.64480 -9.30925 -9.02177 -8.31482 -8.18439 -5.96554 -3.98718 1.99954 2.76131 3.34006 3.40074 3.43685 4.02982 4.23938 4.29566 4.49361 4.58713 4.94418 5.00397 5.11254 5.16179 5.32102 5.39215 5.43493 5.54742 5.58054 5.69944 5.73941 5.76635 5.83689 5.89804 5.95555 6.05509 6.08217 6.18409 6.23345 6.27850 6.35244 6.70197 6.81006 7.04345 7.23938 7.37921 7.68846 7.71591 7.86705 8.03865 8.46809 9.08443 9.65104 11.14935 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.030754 B = 0.003890 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.244642 B = 7195.809976 C = 7390.736575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.046 3.954 12 N -0.504 5.504 13 C 0.033 3.967 14 C -0.107 4.107 15 C -0.067 4.067 16 C 0.493 3.507 17 O -0.509 6.509 18 O -0.514 6.514 19 C -0.102 4.102 20 C -0.116 4.116 21 C -0.110 4.110 22 C 0.071 3.929 23 H 0.081 0.919 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.408 0.592 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.170 -21.707 -2.027 22.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.081 4.081 12 N -0.228 5.228 13 C -0.094 4.094 14 C -0.145 4.145 15 C -0.069 4.069 16 C 0.335 3.665 17 O -0.396 6.396 18 O -0.325 6.325 19 C -0.140 4.140 20 C -0.154 4.154 21 C -0.148 4.148 22 C -0.038 4.038 23 H 0.099 0.901 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.267 0.733 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.138 -21.359 -1.220 22.553 hybrid contribution -0.438 0.845 -1.540 1.810 sum 6.701 -20.514 -2.760 21.756 Atomic orbital electron populations 1.69968 1.06066 1.26527 1.51002 1.25026 0.94831 0.99230 0.95404 0.86605 0.79875 0.83539 0.78047 1.20735 1.21237 1.19854 1.21242 0.92999 0.91048 1.50357 0.92719 1.19072 0.94025 0.91356 0.97149 1.21701 0.99237 0.92879 1.00702 1.22501 0.94159 0.90856 1.00589 1.64967 1.14485 1.01223 1.42174 1.23508 0.96454 0.95942 0.93533 1.22913 0.94964 0.93966 1.02697 1.21880 0.97669 0.98080 0.89295 1.23215 0.83793 0.74262 0.85246 1.90728 1.19877 1.53657 1.75385 1.84526 1.49990 1.64335 1.33667 1.22339 1.01946 0.95047 0.94655 1.22492 0.98742 0.99080 0.95068 1.22391 0.97184 0.98371 0.96812 1.23081 0.95981 0.89792 0.94918 0.90102 0.93049 0.96852 0.96527 0.92533 0.93459 0.94994 0.90844 0.93711 0.88993 0.89095 0.90350 0.73329 0.91582 0.90270 0.91369 0.90358 0.89941 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.26 4.80 -26.73 -0.13 -2.39 16 11 C 0.05 0.84 5.03 -3.82 -0.02 0.82 16 12 N -0.50 -7.65 4.92 -220.39 -1.09 -8.74 16 13 C 0.03 0.47 5.12 -1.12 -0.01 0.46 16 14 C -0.11 -1.17 6.20 -24.14 -0.15 -1.32 16 15 C -0.07 -0.77 0.83 -153.45 -0.13 -0.90 16 16 C 0.49 5.99 6.91 36.00 0.25 6.24 16 17 O -0.51 -7.92 16.21 -18.75 -0.30 -8.22 16 18 O -0.51 -4.54 13.28 -39.25 -0.52 -5.06 16 19 C -0.10 -0.92 5.68 -25.19 -0.14 -1.07 16 20 C -0.12 -1.08 6.92 -24.59 -0.17 -1.25 16 21 C -0.11 -1.26 6.47 -24.89 -0.16 -1.42 16 22 C 0.07 0.97 2.85 -65.60 -0.19 0.78 16 23 H 0.08 1.29 6.25 -51.93 -0.32 0.97 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.98 6.79 -51.93 -0.35 0.62 16 29 H 0.03 0.61 7.87 -51.93 -0.41 0.20 16 30 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 31 H 0.04 0.69 8.00 -51.92 -0.42 0.27 16 32 H 0.09 1.27 7.66 -51.93 -0.40 0.88 16 33 H 0.09 0.87 7.60 -51.93 -0.39 0.47 16 34 H 0.08 0.77 7.76 -51.93 -0.40 0.37 16 35 H 0.41 1.94 9.10 45.56 0.41 2.35 16 36 H 0.07 0.57 7.93 -51.93 -0.41 0.16 16 37 H 0.08 0.61 7.69 -51.93 -0.40 0.21 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.01 8.06 -51.93 -0.42 0.60 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 326.66 15.07 4.92 4.92 Total: -1.00 -32.95 326.66 -8.68 -41.63 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.01 Total: -1.43 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -1.39 Total: -13.33 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.35 Total: -35.45 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.83 Total: -13.29 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.95 -8.68 -41.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711676951.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.099 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds