Wall clock time and date at job start Mon Mar 30 2020 07:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99645 * 2 1 4 4 H 1.48502 * 109.46829 * 179.71883 * 3 2 1 5 5 H 1.48493 * 109.47122 * 299.71879 * 3 2 1 6 6 H 1.48504 * 109.47217 * 59.72457 * 3 2 1 7 7 C 1.37873 * 120.00482 * 179.72086 * 2 1 3 8 8 H 1.08004 * 120.00593 * 180.28066 * 7 2 1 9 9 C 1.50706 * 119.99632 * 0.27649 * 7 2 1 10 10 C 1.53000 * 109.47127 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47066 * 180.02562 * 11 10 9 13 13 C 1.46901 * 111.00035 * 185.31821 * 12 11 10 14 14 H 1.08999 * 109.46902 * 352.52716 * 13 12 11 15 15 C 1.52993 * 109.47305 * 112.53092 * 13 12 11 16 16 C 1.53779 * 113.61513 * 40.74500 * 15 13 12 17 17 C 1.53775 * 87.08258 * 220.01764 * 16 15 13 18 18 C 1.53780 * 87.08334 * 25.43354 * 17 16 15 19 19 C 1.53005 * 109.46911 * 232.53216 * 13 12 11 20 20 H 1.08995 * 110.45503 * 300.09869 * 19 13 12 21 21 C 1.54507 * 110.50918 * 62.70710 * 19 13 12 22 22 C 1.54486 * 104.06106 * 118.64514 * 21 19 13 23 23 O 1.44429 * 104.80311 * 23.97738 * 22 21 19 24 24 C 1.44421 * 105.27187 * 319.48858 * 23 22 21 25 25 H 0.97008 * 120.00116 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47250 * 299.99829 * 9 7 2 27 27 H 1.09000 * 109.46808 * 60.00336 * 9 7 2 28 28 H 1.08996 * 109.47314 * 300.00838 * 10 9 7 29 29 H 1.09005 * 109.46651 * 60.00120 * 10 9 7 30 30 H 1.08997 * 109.47227 * 299.99961 * 11 10 9 31 31 H 1.09000 * 109.46838 * 60.00473 * 11 10 9 32 32 H 1.00899 * 111.00216 * 61.36084 * 12 11 10 33 33 H 1.09001 * 112.84874 * 172.04980 * 15 13 12 34 34 H 1.09003 * 113.61878 * 334.56944 * 16 15 13 35 35 H 1.09008 * 113.61534 * 105.47140 * 16 15 13 36 36 H 1.09001 * 113.62051 * 270.88170 * 17 16 15 37 37 H 1.09004 * 113.69206 * 139.99441 * 17 16 15 38 38 H 1.09003 * 113.61318 * 220.02081 * 18 17 16 39 39 H 1.09002 * 113.61641 * 89.11176 * 18 17 16 40 40 H 1.09001 * 110.51280 * 237.28844 * 21 19 13 41 41 H 1.08994 * 110.51709 * 0.02562 * 21 19 13 42 42 H 1.09001 * 110.36992 * 142.80611 * 22 21 19 43 43 H 1.08998 * 110.36785 * 265.03065 * 22 21 19 44 44 H 1.09004 * 110.37439 * 281.68077 * 24 23 22 45 45 H 1.09000 * 110.37188 * 159.34940 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0069 5 1 1.8954 2.3935 -1.2159 6 1 1.8852 2.3995 1.2091 7 6 2.0045 -1.1939 0.0058 8 1 3.0846 -1.1939 0.0104 9 6 1.2510 -2.4991 0.0059 10 6 2.2453 -3.6620 0.0122 11 6 1.4804 -4.9870 0.0117 12 7 2.4350 -6.1036 0.0184 13 6 1.7399 -7.3914 -0.1091 14 1 0.6635 -7.2310 -0.0465 15 6 2.0835 -8.0251 -1.4585 16 6 3.5616 -7.8702 -1.8533 17 6 3.0701 -7.6099 -3.2869 18 6 1.7494 -7.1290 -2.6629 19 6 2.1830 -8.3240 1.0200 20 1 3.2586 -8.4941 0.9736 21 6 1.7862 -7.7379 2.3934 22 6 0.8270 -8.7926 2.9887 23 8 1.1778 -10.0266 2.3251 24 6 1.4166 -9.6634 0.9479 25 1 -0.4851 -0.8401 0.0004 26 1 0.6207 -2.5547 0.8934 27 1 0.6282 -2.5590 -0.8866 28 1 2.8754 -3.6062 -0.8754 29 1 2.8685 -3.6022 0.9045 30 1 0.8501 -5.0430 0.8991 31 1 0.8575 -5.0465 -0.8808 32 1 3.0094 -6.0832 0.8477 33 1 1.7088 -9.0441 -1.5552 34 1 4.0480 -7.0088 -1.3953 35 1 4.1398 -8.7885 -1.7499 36 1 2.9664 -8.5158 -3.8843 37 1 3.6210 -6.8236 -3.8029 38 1 0.8645 -7.4490 -3.2130 39 1 1.7402 -6.0650 -2.4261 40 1 2.6653 -7.6205 3.0270 41 1 1.2740 -6.7840 2.2681 42 1 0.9821 -8.8826 4.0638 43 1 -0.2084 -8.5265 2.7762 44 1 0.4716 -9.5319 0.4207 45 1 2.0244 -10.4223 0.4553 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711831303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:16 Heat of formation + Delta-G solvation = -52.825404 kcal Electronic energy + Delta-G solvation = -21107.062414 eV Core-core repulsion = 18123.901147 eV Total energy + Delta-G solvation = -2983.161267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.30901 -38.56769 -36.03209 -34.11777 -32.50849 -30.58115 -29.69364 -26.96620 -25.65671 -25.16508 -23.41117 -22.50381 -22.03787 -20.76562 -20.02942 -18.93373 -16.87029 -16.75267 -16.49286 -15.64580 -15.26940 -14.87819 -14.81669 -14.34158 -13.82595 -13.73058 -13.31675 -12.98751 -12.76007 -12.39092 -12.27036 -12.12429 -11.68726 -11.62220 -11.50952 -11.43146 -11.22695 -10.89414 -10.72741 -10.63813 -10.24912 -10.12867 -10.08669 -10.01572 -9.98269 -9.82588 -9.71597 -8.51985 -8.30870 -8.19212 -6.34772 -4.03395 3.44536 3.48571 3.62067 3.73238 4.15668 4.32208 4.48373 4.55962 4.69013 4.82611 4.86203 4.92425 4.95863 5.05097 5.09850 5.25954 5.41332 5.42506 5.45128 5.50604 5.52440 5.62201 5.64681 5.75456 5.76249 5.82193 5.90190 5.96145 6.02553 6.05833 6.16956 6.26140 6.40868 6.55442 6.57666 6.60819 6.77292 6.97640 7.26072 7.43918 7.51891 7.60062 8.24898 8.49411 8.90839 9.68972 11.05964 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019898 B = 0.004071 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.838333 B = 6877.070451 C = 7849.379475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 1.073 2.927 4 H -0.289 1.289 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.599 4.599 8 H 0.049 0.951 9 C 0.009 3.991 10 C -0.098 4.098 11 C 0.059 3.941 12 N -0.679 5.679 13 C 0.104 3.896 14 H 0.058 0.942 15 C -0.105 4.105 16 C -0.123 4.123 17 C -0.144 4.144 18 C -0.131 4.131 19 C -0.131 4.131 20 H 0.090 0.910 21 C -0.158 4.158 22 C 0.046 3.954 23 O -0.379 6.379 24 C 0.053 3.947 25 H 0.268 0.732 26 H 0.003 0.997 27 H 0.006 0.994 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.021 0.979 31 H 0.067 0.933 32 H 0.339 0.661 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.902 -19.894 0.380 20.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.190 4.190 3 Si 0.902 3.098 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.638 4.638 8 H 0.067 0.933 9 C -0.029 4.029 10 C -0.136 4.136 11 C -0.069 4.069 12 N -0.310 5.310 13 C -0.006 4.006 14 H 0.076 0.924 15 C -0.124 4.124 16 C -0.160 4.160 17 C -0.181 4.181 18 C -0.169 4.169 19 C -0.151 4.151 20 H 0.108 0.892 21 C -0.196 4.196 22 C -0.031 4.031 23 O -0.297 6.297 24 C -0.024 4.024 25 H 0.079 0.921 26 H 0.022 0.978 27 H 0.024 0.976 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.157 0.843 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.862 -18.406 -0.197 18.808 hybrid contribution -0.295 -1.521 0.785 1.737 sum 3.567 -19.927 0.588 20.252 Atomic orbital electron populations 1.70725 1.06912 1.30566 1.47056 1.25849 0.96562 1.02757 0.93842 0.83486 0.74487 0.74877 0.76937 1.21520 1.21348 1.21388 1.22114 0.94347 0.92008 1.55295 0.93270 1.19198 0.94662 0.93316 0.95710 1.21459 0.98823 0.92399 1.00923 1.22256 0.93989 0.91090 0.99605 1.60498 1.23906 1.01208 1.45408 1.21432 0.96908 0.89077 0.93171 0.92363 1.22609 0.97942 0.98071 0.93820 1.22821 0.95482 1.01819 0.95898 1.22753 0.97991 1.00602 0.96758 1.22890 0.96656 1.01137 0.96172 1.22945 1.01806 0.95692 0.94625 0.89198 1.23080 1.00456 0.99657 0.96396 1.23389 0.97901 0.83815 0.97967 1.89109 1.89825 1.29602 1.21190 1.23454 0.99048 0.95899 0.83986 0.92137 0.97839 0.97591 0.92437 0.93562 0.96043 0.91502 0.84266 0.90078 0.88164 0.93092 0.91265 0.91777 0.92757 0.88857 0.90417 0.90289 0.89160 0.92317 0.92144 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.37 13.65 55.43 0.76 -27.61 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.07 25.68 29.90 -169.99 -5.08 20.59 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.60 -17.28 9.11 -34.44 -0.31 -17.60 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 9 C 0.01 0.22 4.28 -27.88 -0.12 0.10 16 10 C -0.10 -1.99 5.46 -26.73 -0.15 -2.14 16 11 C 0.06 0.96 4.96 -3.82 -0.02 0.94 16 12 N -0.68 -8.82 4.19 -106.73 -0.45 -9.27 16 13 C 0.10 1.15 1.47 -67.71 -0.10 1.05 16 14 H 0.06 0.71 7.55 -51.93 -0.39 0.32 16 15 C -0.11 -1.11 3.40 -89.81 -0.31 -1.42 16 16 C -0.12 -1.33 7.44 -25.92 -0.19 -1.52 16 17 C -0.14 -1.57 8.08 -25.92 -0.21 -1.78 16 18 C -0.13 -1.57 7.52 -25.92 -0.19 -1.76 16 19 C -0.13 -1.28 2.54 -89.05 -0.23 -1.51 16 20 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 21 C -0.16 -1.56 5.98 -25.16 -0.15 -1.71 16 22 C 0.05 0.45 7.63 37.94 0.29 0.74 16 23 O -0.38 -4.40 11.65 -35.23 -0.41 -4.81 16 24 C 0.05 0.52 6.13 37.93 0.23 0.75 16 25 H 0.27 8.27 7.22 -40.82 -0.29 7.97 16 26 H 0.00 0.09 8.00 -51.93 -0.42 -0.33 16 27 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.02 0.35 7.60 -51.93 -0.39 -0.05 16 31 H 0.07 1.12 7.03 -51.93 -0.37 0.76 16 32 H 0.34 4.24 7.53 -39.29 -0.30 3.94 16 33 H 0.08 0.77 7.35 -51.93 -0.38 0.39 16 34 H 0.10 1.24 6.97 -51.93 -0.36 0.88 16 35 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.33 6.15 -51.93 -0.32 1.01 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.86 6.98 -51.93 -0.36 0.49 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.57 7.86 -51.93 -0.41 0.16 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 345.73 15.07 5.21 5.21 Total: -1.00 -30.45 345.73 -9.79 -40.23 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -8.26 Total: 1.22 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: -1.55 Total: -25.57 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.31 Total: -36.88 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.41 Total: -4.81 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.45 -9.79 -40.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711831303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.593 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds