Wall clock time and date at job start Mon Mar 30 2020 07:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99645 * 2 1 4 4 H 1.48502 * 109.46829 * 179.71883 * 3 2 1 5 5 H 1.48493 * 109.47122 * 299.71879 * 3 2 1 6 6 H 1.48504 * 109.47217 * 59.72457 * 3 2 1 7 7 C 1.37873 * 120.00482 * 179.72086 * 2 1 3 8 8 H 1.08004 * 120.00593 * 180.28066 * 7 2 1 9 9 C 1.50706 * 119.99632 * 0.27649 * 7 2 1 10 10 C 1.53000 * 109.47127 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47066 * 180.02562 * 11 10 9 13 13 C 1.46901 * 111.00035 * 185.31821 * 12 11 10 14 14 H 1.08999 * 109.46902 * 352.52716 * 13 12 11 15 15 C 1.52993 * 109.47305 * 112.53092 * 13 12 11 16 16 C 1.53779 * 113.61513 * 40.74500 * 15 13 12 17 17 C 1.53775 * 87.08258 * 220.01764 * 16 15 13 18 18 C 1.53780 * 87.08334 * 25.43354 * 17 16 15 19 19 C 1.53005 * 109.46911 * 232.53216 * 13 12 11 20 20 H 1.08995 * 110.45503 * 300.09869 * 19 13 12 21 21 C 1.54507 * 110.50918 * 62.70710 * 19 13 12 22 22 C 1.54486 * 104.06106 * 118.64514 * 21 19 13 23 23 O 1.44429 * 104.80311 * 23.97738 * 22 21 19 24 24 C 1.44421 * 105.27187 * 319.48858 * 23 22 21 25 25 H 0.97008 * 120.00116 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47250 * 299.99829 * 9 7 2 27 27 H 1.09000 * 109.46808 * 60.00336 * 9 7 2 28 28 H 1.08996 * 109.47314 * 300.00838 * 10 9 7 29 29 H 1.09005 * 109.46651 * 60.00120 * 10 9 7 30 30 H 1.08997 * 109.47227 * 299.99961 * 11 10 9 31 31 H 1.09000 * 109.46838 * 60.00473 * 11 10 9 32 32 H 1.00899 * 111.00216 * 61.36084 * 12 11 10 33 33 H 1.09001 * 112.84874 * 172.04980 * 15 13 12 34 34 H 1.09003 * 113.61878 * 334.56944 * 16 15 13 35 35 H 1.09008 * 113.61534 * 105.47140 * 16 15 13 36 36 H 1.09001 * 113.62051 * 270.88170 * 17 16 15 37 37 H 1.09004 * 113.69206 * 139.99441 * 17 16 15 38 38 H 1.09003 * 113.61318 * 220.02081 * 18 17 16 39 39 H 1.09002 * 113.61641 * 89.11176 * 18 17 16 40 40 H 1.09001 * 110.51280 * 237.28844 * 21 19 13 41 41 H 1.08994 * 110.51709 * 0.02562 * 21 19 13 42 42 H 1.09001 * 110.36992 * 142.80611 * 22 21 19 43 43 H 1.08998 * 110.36785 * 265.03065 * 22 21 19 44 44 H 1.09004 * 110.37439 * 281.68077 * 24 23 22 45 45 H 1.09000 * 110.37188 * 159.34940 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0069 5 1 1.8954 2.3935 -1.2159 6 1 1.8852 2.3995 1.2091 7 6 2.0045 -1.1939 0.0058 8 1 3.0846 -1.1939 0.0104 9 6 1.2510 -2.4991 0.0059 10 6 2.2453 -3.6620 0.0122 11 6 1.4804 -4.9870 0.0117 12 7 2.4350 -6.1036 0.0184 13 6 1.7399 -7.3914 -0.1091 14 1 0.6635 -7.2310 -0.0465 15 6 2.0835 -8.0251 -1.4585 16 6 3.5616 -7.8702 -1.8533 17 6 3.0701 -7.6099 -3.2869 18 6 1.7494 -7.1290 -2.6629 19 6 2.1830 -8.3240 1.0200 20 1 3.2586 -8.4941 0.9736 21 6 1.7862 -7.7379 2.3934 22 6 0.8270 -8.7926 2.9887 23 8 1.1778 -10.0266 2.3251 24 6 1.4166 -9.6634 0.9479 25 1 -0.4851 -0.8401 0.0004 26 1 0.6207 -2.5547 0.8934 27 1 0.6282 -2.5590 -0.8866 28 1 2.8754 -3.6062 -0.8754 29 1 2.8685 -3.6022 0.9045 30 1 0.8501 -5.0430 0.8991 31 1 0.8575 -5.0465 -0.8808 32 1 3.0094 -6.0832 0.8477 33 1 1.7088 -9.0441 -1.5552 34 1 4.0480 -7.0088 -1.3953 35 1 4.1398 -8.7885 -1.7499 36 1 2.9664 -8.5158 -3.8843 37 1 3.6210 -6.8236 -3.8029 38 1 0.8645 -7.4490 -3.2130 39 1 1.7402 -6.0650 -2.4261 40 1 2.6653 -7.6205 3.0270 41 1 1.2740 -6.7840 2.2681 42 1 0.9821 -8.8826 4.0638 43 1 -0.2084 -8.5265 2.7762 44 1 0.4716 -9.5319 0.4207 45 1 2.0244 -10.4223 0.4553 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711831303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:15 Heat of formation + Delta-G solvation = -70.308142 kcal Electronic energy + Delta-G solvation = -21107.820522 eV Core-core repulsion = 18123.901147 eV Total energy + Delta-G solvation = -2983.919375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.18237 -39.43392 -37.36115 -35.83987 -34.00713 -31.92542 -30.68482 -28.20042 -26.92775 -26.34088 -24.75731 -23.70727 -23.11293 -22.27503 -21.05723 -19.87202 -18.91651 -17.74296 -17.38756 -16.53610 -16.15726 -16.13390 -15.85817 -15.68267 -15.37095 -15.19944 -14.91892 -14.14100 -13.79386 -13.71963 -13.36254 -13.28190 -13.11080 -12.89094 -12.61510 -12.51006 -12.28514 -12.25235 -12.12044 -11.93933 -11.72155 -11.65109 -11.53863 -11.18005 -10.99182 -10.86571 -10.81185 -10.63518 -10.55799 -9.30050 -8.70346 -6.40541 1.51352 1.61053 1.77753 2.55227 2.96077 3.10357 3.14780 3.51905 3.61826 3.88931 3.95584 4.00054 4.04075 4.08880 4.16759 4.21766 4.26175 4.31933 4.45515 4.56070 4.61754 4.64855 4.71133 4.78951 4.83767 4.84446 4.90947 4.92921 4.95689 5.01100 5.08438 5.14456 5.16635 5.17152 5.27131 5.43209 5.52404 5.53598 5.78291 5.83005 5.98126 6.12552 6.18254 6.48647 6.57774 7.41537 8.70545 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019898 B = 0.004071 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.838333 B = 6877.070451 C = 7849.379475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.040 4.040 3 Si 1.122 2.878 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.618 4.618 8 H 0.049 0.951 9 C 0.009 3.991 10 C -0.083 4.083 11 C 0.077 3.923 12 N -0.675 5.675 13 C 0.108 3.892 14 H 0.049 0.951 15 C -0.097 4.097 16 C -0.119 4.119 17 C -0.141 4.141 18 C -0.140 4.140 19 C -0.122 4.122 20 H 0.096 0.904 21 C -0.157 4.157 22 C 0.044 3.956 23 O -0.396 6.396 24 C 0.053 3.947 25 H 0.255 0.745 26 H -0.013 1.013 27 H -0.014 1.014 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.021 0.979 31 H 0.059 0.941 32 H 0.344 0.656 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.153 -21.085 0.491 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.237 4.237 3 Si 0.943 3.057 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.656 4.656 8 H 0.067 0.933 9 C -0.028 4.028 10 C -0.121 4.121 11 C -0.052 4.052 12 N -0.306 5.306 13 C -0.001 4.001 14 H 0.067 0.933 15 C -0.116 4.116 16 C -0.157 4.157 17 C -0.178 4.178 18 C -0.178 4.178 19 C -0.142 4.142 20 H 0.114 0.886 21 C -0.195 4.195 22 C -0.033 4.033 23 O -0.315 6.315 24 C -0.024 4.024 25 H 0.064 0.936 26 H 0.005 0.995 27 H 0.004 0.996 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.163 0.837 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.120 0.880 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.117 -19.629 -0.084 20.286 hybrid contribution -0.708 -1.188 0.734 1.565 sum 4.409 -20.817 0.650 21.289 Atomic orbital electron populations 1.70865 1.07954 1.29826 1.49039 1.27457 0.96620 1.06931 0.92703 0.82874 0.74253 0.70918 0.77607 1.19449 1.20362 1.20296 1.22551 0.94652 0.93526 1.54828 0.93273 1.19145 0.95126 0.94681 0.93857 1.21217 0.97628 0.92675 1.00586 1.21893 0.93755 0.90333 0.99227 1.60413 1.23197 1.01204 1.45757 1.21417 0.96163 0.88237 0.94313 0.93303 1.22622 0.97806 0.98577 0.92590 1.22746 0.95548 1.01883 0.95493 1.22775 0.97001 1.00973 0.97052 1.22867 0.97626 0.99787 0.97506 1.22850 1.02101 0.95454 0.93775 0.88612 1.23064 1.00673 0.99085 0.96691 1.23476 0.97894 0.83288 0.98630 1.89095 1.89941 1.30416 1.22097 1.23549 0.99429 0.95994 0.83449 0.93576 0.99474 0.99564 0.93183 0.93275 0.96107 0.92277 0.83661 0.88030 0.89870 0.91383 0.89461 0.92811 0.92255 0.91683 0.89701 0.91488 0.88005 0.92262 0.91868 0.87536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.19 13.65 21.44 0.29 -58.90 16 2 C -0.04 -2.37 5.46 84.65 0.46 -1.90 16 3 Si 1.12 51.11 29.90 68.60 2.05 53.16 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.62 -36.07 9.11 25.60 0.23 -35.84 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.01 0.50 4.28 29.85 0.13 0.63 16 10 C -0.08 -3.42 5.46 30.59 0.17 -3.25 16 11 C 0.08 2.52 4.96 86.30 0.43 2.95 16 12 N -0.67 -17.06 4.19 -491.57 -2.06 -19.11 16 13 C 0.11 2.25 1.47 44.91 0.07 2.32 16 14 H 0.05 1.14 7.55 -2.39 -0.02 1.12 16 15 C -0.10 -1.86 3.40 -10.27 -0.03 -1.90 16 16 C -0.12 -2.34 7.44 31.12 0.23 -2.11 16 17 C -0.14 -2.87 8.08 31.12 0.25 -2.62 16 18 C -0.14 -3.25 7.52 31.12 0.23 -3.01 16 19 C -0.12 -2.14 2.54 -9.78 -0.02 -2.17 16 20 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 21 C -0.16 -2.87 5.98 31.61 0.19 -2.68 16 22 C 0.04 0.79 7.63 72.49 0.55 1.35 16 23 O -0.40 -8.43 11.65 -148.98 -1.74 -10.17 16 24 C 0.05 0.89 6.13 72.48 0.44 1.34 16 25 H 0.25 16.26 7.22 -92.70 -0.67 15.59 16 26 H -0.01 -0.73 8.00 -2.39 -0.02 -0.75 16 27 H -0.01 -0.79 8.01 -2.39 -0.02 -0.81 16 28 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.02 0.68 7.60 -2.39 -0.02 0.67 16 31 H 0.06 2.03 7.03 -2.39 -0.02 2.02 16 32 H 0.34 8.20 7.53 -89.69 -0.68 7.53 16 33 H 0.10 1.60 7.35 -2.39 -0.02 1.58 16 34 H 0.08 1.95 6.97 -2.39 -0.02 1.93 16 35 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.06 1.88 6.15 -2.39 -0.01 1.87 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.39 6.98 -2.39 -0.02 1.38 16 42 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.06 1.04 7.86 -2.38 -0.02 1.02 16 45 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -65.63 345.73 2.24 -63.39 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.36 Total: 18.53 kcal Atomic # 6 Polarization: -50.22 SS G_CDS: 3.33 Total: -46.90 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -1.76 Total: -78.01 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -1.74 Total: -10.17 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.05 Total: 53.16 kcal Total: -65.63 2.24 -63.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711831303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.918 kcal (2) G-P(sol) polarization free energy of solvation -65.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds