Wall clock time and date at job start Mon Mar 30 2020 07:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48505 * 109.47347 * 270.00393 * 3 2 1 5 5 H 1.48498 * 109.46941 * 30.00452 * 3 2 1 6 6 H 1.48500 * 109.47184 * 150.00610 * 3 2 1 7 7 C 1.37875 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00440 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00291 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47479 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47140 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47091 * 179.97438 * 11 10 9 13 13 C 1.46902 * 111.00161 * 174.29761 * 12 11 10 14 14 H 1.09005 * 109.46833 * 329.76806 * 13 12 11 15 15 C 1.52999 * 109.46828 * 89.76236 * 13 12 11 16 16 C 1.53786 * 113.61654 * 279.67842 * 15 13 12 17 17 C 1.53956 * 87.01906 * 220.05248 * 16 15 13 18 18 C 1.53779 * 87.11233 * 25.36506 * 17 16 15 19 19 C 1.52993 * 109.47417 * 209.76594 * 13 12 11 20 20 H 1.08999 * 110.80841 * 188.63093 * 19 13 12 21 21 C 1.54816 * 110.90836 * 64.99632 * 19 13 12 22 22 C 1.54098 * 104.18830 * 220.92211 * 21 19 13 23 23 O 1.43752 * 107.29658 * 357.97144 * 22 21 19 24 24 C 1.44389 * 106.96955 * 26.51244 * 23 22 21 25 25 H 0.96996 * 120.00021 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46911 * 300.00206 * 9 7 2 27 27 H 1.09006 * 109.46820 * 59.99412 * 9 7 2 28 28 H 1.09006 * 109.47174 * 299.99999 * 10 9 7 29 29 H 1.08996 * 109.47043 * 59.99803 * 10 9 7 30 30 H 1.08996 * 109.47064 * 300.00074 * 11 10 9 31 31 H 1.08996 * 109.47330 * 59.99958 * 11 10 9 32 32 H 1.00902 * 110.99950 * 298.25086 * 12 11 10 33 33 H 1.08997 * 112.84900 * 50.88009 * 15 13 12 34 34 H 1.08996 * 113.61515 * 334.57137 * 16 15 13 35 35 H 1.08998 * 113.61331 * 105.47114 * 16 15 13 36 36 H 1.08999 * 113.53475 * 270.80879 * 17 16 15 37 37 H 1.08999 * 113.66153 * 139.93459 * 17 16 15 38 38 H 1.09001 * 113.60819 * 220.09269 * 18 17 16 39 39 H 1.08996 * 113.61598 * 89.18959 * 18 17 16 40 40 H 1.08997 * 110.48493 * 339.60146 * 21 19 13 41 41 H 1.09001 * 110.48201 * 102.24702 * 21 19 13 42 42 H 1.09007 * 109.87903 * 117.39430 * 22 21 19 43 43 H 1.08994 * 109.88160 * 238.54985 * 22 21 19 44 44 H 1.08999 * 110.61258 * 201.43413 * 24 23 22 45 45 H 1.09001 * 110.61705 * 78.44287 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4350 -6.1036 -0.0018 13 6 1.7399 -7.3907 0.1338 14 1 0.8277 -7.2516 0.7142 15 6 1.3844 -7.9270 -1.2543 16 6 0.1219 -7.2881 -1.8568 17 6 -0.2437 -8.6913 -2.3742 18 6 0.6054 -9.2526 -1.2215 19 6 2.6517 -8.3899 0.8486 20 1 2.2212 -9.3911 0.8269 21 6 2.9314 -7.9401 2.3033 22 6 4.4270 -8.2467 2.5125 23 8 4.9114 -8.8563 1.3041 24 6 4.0721 -8.3843 0.2282 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5571 0.8896 27 1 0.6240 -2.5567 -0.8903 28 1 2.8720 -3.6043 -0.8906 29 1 2.8720 -3.6043 0.8894 30 1 0.8534 -5.0451 0.8885 31 1 0.8540 -5.0446 -0.8913 32 1 3.0088 -6.0883 -0.8316 33 1 2.2358 -7.9375 -1.9348 34 1 -0.5722 -6.9038 -1.1094 35 1 0.3318 -6.5703 -2.6497 36 1 0.1617 -8.9102 -3.3620 37 1 -1.3047 -8.9261 -2.2894 38 1 1.2051 -10.1184 -1.5025 39 1 0.0438 -9.4064 -0.3001 40 1 2.7413 -6.8728 2.4157 41 1 2.3230 -8.5128 3.0033 42 1 4.9715 -7.3223 2.7053 43 1 4.5510 -8.9337 3.3495 44 1 4.1218 -9.0630 -0.6233 45 1 4.3580 -7.3748 -0.0671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711831304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:18 Heat of formation + Delta-G solvation = -50.322330 kcal Electronic energy + Delta-G solvation = -21035.715929 eV Core-core repulsion = 18052.663204 eV Total energy + Delta-G solvation = -2983.052725 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.18826 -38.55113 -35.95108 -33.81578 -32.37240 -30.73568 -29.29081 -27.05993 -25.74237 -25.49025 -23.56181 -22.69496 -21.65552 -20.32958 -19.88638 -19.23790 -16.65095 -16.35124 -16.00015 -15.71909 -15.53373 -15.05567 -14.48069 -14.18880 -14.12695 -13.54533 -13.33566 -12.79856 -12.56551 -12.41411 -12.30223 -12.00944 -11.78741 -11.58701 -11.41789 -11.29288 -10.91509 -10.84185 -10.70625 -10.60410 -10.53499 -10.49903 -10.41655 -10.12679 -9.67144 -9.57498 -9.30792 -9.03926 -8.33303 -8.07179 -5.98610 -4.00509 3.32844 3.39042 3.42940 3.95935 4.25473 4.45375 4.48260 4.49082 4.66230 4.70870 4.75054 4.90282 5.05168 5.16624 5.31606 5.36899 5.37487 5.43551 5.58135 5.59505 5.63925 5.72009 5.76246 5.79080 5.82962 5.87606 5.93757 5.96320 6.01815 6.03816 6.12378 6.28665 6.34250 6.36487 6.73764 6.79154 6.91194 7.15872 7.36170 7.61292 7.69985 7.85160 8.02029 8.45611 9.06813 9.63553 11.12837 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.004155 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.766543 B = 6737.521864 C = 7889.823521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.105 4.105 11 C 0.059 3.941 12 N -0.682 5.682 13 C 0.106 3.894 14 H 0.079 0.921 15 C -0.138 4.138 16 C -0.136 4.136 17 C -0.143 4.143 18 C -0.131 4.131 19 C -0.106 4.106 20 H 0.080 0.920 21 C -0.146 4.146 22 C 0.051 3.949 23 O -0.387 6.387 24 C 0.054 3.946 25 H 0.260 0.740 26 H 0.014 0.986 27 H 0.013 0.987 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.029 0.971 32 H 0.337 0.663 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.367 -20.212 -0.577 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.144 4.144 11 C -0.069 4.069 12 N -0.312 5.312 13 C -0.005 4.005 14 H 0.097 0.903 15 C -0.158 4.158 16 C -0.174 4.174 17 C -0.181 4.181 18 C -0.170 4.170 19 C -0.126 4.126 20 H 0.098 0.902 21 C -0.184 4.184 22 C -0.026 4.026 23 O -0.306 6.306 24 C -0.023 4.023 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.031 0.969 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.155 0.845 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.535 -20.160 0.100 20.319 hybrid contribution -0.234 1.059 -0.895 1.406 sum 2.301 -19.102 -0.795 19.256 Atomic orbital electron populations 1.69963 1.06059 1.26523 1.51107 1.25020 0.94831 0.99230 0.95397 0.86611 0.79898 0.83529 0.78071 1.20712 1.21248 1.19854 1.21262 0.93041 0.91087 1.50247 0.92720 1.19056 0.94016 0.91444 0.96989 1.21599 0.99115 0.93037 1.00605 1.22185 0.94020 0.90776 0.99936 1.60649 1.23897 1.01492 1.45149 1.21472 0.95947 0.89320 0.93751 0.90312 1.23300 0.97520 0.96999 0.97960 1.22996 0.97340 0.96406 1.00618 1.22849 0.99950 0.96948 0.98316 1.22856 0.98475 0.96718 0.98914 1.22699 0.96279 0.98634 0.94941 0.90196 1.22911 0.95829 1.03590 0.96054 1.23088 0.93997 0.97638 0.87849 1.88806 1.55636 1.69446 1.16685 1.23577 0.88377 1.00048 0.90248 0.93071 0.96718 0.96892 0.93771 0.92737 0.91824 0.95284 0.84461 0.89317 0.89963 0.91438 0.90474 0.91669 0.91730 0.90158 0.89043 0.91589 0.92355 0.90733 0.90132 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.14 5.46 -26.73 -0.15 -2.29 16 11 C 0.06 0.96 5.42 -3.82 -0.02 0.94 16 12 N -0.68 -8.93 4.74 -106.73 -0.51 -9.43 16 13 C 0.11 1.15 1.56 -67.72 -0.11 1.05 16 14 H 0.08 0.94 7.48 -51.93 -0.39 0.55 16 15 C -0.14 -1.34 2.89 -89.80 -0.26 -1.60 16 16 C -0.14 -1.45 6.09 -25.82 -0.16 -1.60 16 17 C -0.14 -1.28 8.09 -25.83 -0.21 -1.49 16 18 C -0.13 -1.13 6.68 -25.92 -0.17 -1.31 16 19 C -0.11 -1.11 2.86 -88.61 -0.25 -1.36 16 20 H 0.08 0.78 7.34 -51.93 -0.38 0.40 16 21 C -0.15 -1.59 6.50 -25.20 -0.16 -1.76 16 22 C 0.05 0.58 7.70 37.73 0.29 0.87 16 23 O -0.39 -5.09 11.52 -35.23 -0.41 -5.50 16 24 C 0.05 0.61 6.79 38.21 0.26 0.87 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.07 7.91 -51.93 -0.41 0.66 16 31 H 0.03 0.47 6.68 -51.93 -0.35 0.13 16 32 H 0.34 4.26 7.53 -39.29 -0.30 3.96 16 33 H 0.09 0.86 8.02 -51.93 -0.42 0.44 16 34 H 0.08 0.94 7.98 -51.93 -0.41 0.53 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.09 1.15 7.47 -51.93 -0.39 0.76 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.88 6.35 -51.93 -0.33 0.55 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -29.85 348.59 -9.84 -39.69 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -8.41 Total: 0.38 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -1.49 Total: -20.82 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.23 Total: -35.79 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.41 Total: -5.50 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.85 -9.84 -39.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711831304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.631 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds