Wall clock time and date at job start Mon Mar 30 2020 07:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48505 * 109.47347 * 270.00393 * 3 2 1 5 5 H 1.48498 * 109.46941 * 30.00452 * 3 2 1 6 6 H 1.48500 * 109.47184 * 150.00610 * 3 2 1 7 7 C 1.37875 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00440 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00291 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47479 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47140 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47091 * 179.97438 * 11 10 9 13 13 C 1.46902 * 111.00161 * 174.29761 * 12 11 10 14 14 H 1.09005 * 109.46833 * 329.76806 * 13 12 11 15 15 C 1.52999 * 109.46828 * 89.76236 * 13 12 11 16 16 C 1.53786 * 113.61654 * 279.67842 * 15 13 12 17 17 C 1.53956 * 87.01906 * 220.05248 * 16 15 13 18 18 C 1.53779 * 87.11233 * 25.36506 * 17 16 15 19 19 C 1.52993 * 109.47417 * 209.76594 * 13 12 11 20 20 H 1.08999 * 110.80841 * 188.63093 * 19 13 12 21 21 C 1.54816 * 110.90836 * 64.99632 * 19 13 12 22 22 C 1.54098 * 104.18830 * 220.92211 * 21 19 13 23 23 O 1.43752 * 107.29658 * 357.97144 * 22 21 19 24 24 C 1.44389 * 106.96955 * 26.51244 * 23 22 21 25 25 H 0.96996 * 120.00021 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46911 * 300.00206 * 9 7 2 27 27 H 1.09006 * 109.46820 * 59.99412 * 9 7 2 28 28 H 1.09006 * 109.47174 * 299.99999 * 10 9 7 29 29 H 1.08996 * 109.47043 * 59.99803 * 10 9 7 30 30 H 1.08996 * 109.47064 * 300.00074 * 11 10 9 31 31 H 1.08996 * 109.47330 * 59.99958 * 11 10 9 32 32 H 1.00902 * 110.99950 * 298.25086 * 12 11 10 33 33 H 1.08997 * 112.84900 * 50.88009 * 15 13 12 34 34 H 1.08996 * 113.61515 * 334.57137 * 16 15 13 35 35 H 1.08998 * 113.61331 * 105.47114 * 16 15 13 36 36 H 1.08999 * 113.53475 * 270.80879 * 17 16 15 37 37 H 1.08999 * 113.66153 * 139.93459 * 17 16 15 38 38 H 1.09001 * 113.60819 * 220.09269 * 18 17 16 39 39 H 1.08996 * 113.61598 * 89.18959 * 18 17 16 40 40 H 1.08997 * 110.48493 * 339.60146 * 21 19 13 41 41 H 1.09001 * 110.48201 * 102.24702 * 21 19 13 42 42 H 1.09007 * 109.87903 * 117.39430 * 22 21 19 43 43 H 1.08994 * 109.88160 * 238.54985 * 22 21 19 44 44 H 1.08999 * 110.61258 * 201.43413 * 24 23 22 45 45 H 1.09001 * 110.61705 * 78.44287 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4350 -6.1036 -0.0018 13 6 1.7399 -7.3907 0.1338 14 1 0.8277 -7.2516 0.7142 15 6 1.3844 -7.9270 -1.2543 16 6 0.1219 -7.2881 -1.8568 17 6 -0.2437 -8.6913 -2.3742 18 6 0.6054 -9.2526 -1.2215 19 6 2.6517 -8.3899 0.8486 20 1 2.2212 -9.3911 0.8269 21 6 2.9314 -7.9401 2.3033 22 6 4.4270 -8.2467 2.5125 23 8 4.9114 -8.8563 1.3041 24 6 4.0721 -8.3843 0.2282 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5571 0.8896 27 1 0.6240 -2.5567 -0.8903 28 1 2.8720 -3.6043 -0.8906 29 1 2.8720 -3.6043 0.8894 30 1 0.8534 -5.0451 0.8885 31 1 0.8540 -5.0446 -0.8913 32 1 3.0088 -6.0883 -0.8316 33 1 2.2358 -7.9375 -1.9348 34 1 -0.5722 -6.9038 -1.1094 35 1 0.3318 -6.5703 -2.6497 36 1 0.1617 -8.9102 -3.3620 37 1 -1.3047 -8.9261 -2.2894 38 1 1.2051 -10.1184 -1.5025 39 1 0.0438 -9.4064 -0.3001 40 1 2.7413 -6.8728 2.4157 41 1 2.3230 -8.5128 3.0033 42 1 4.9715 -7.3223 2.7053 43 1 4.5510 -8.9337 3.3495 44 1 4.1218 -9.0630 -0.6233 45 1 4.3580 -7.3748 -0.0671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711831304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:18 Heat of formation + Delta-G solvation = -67.450940 kcal Electronic energy + Delta-G solvation = -21036.458681 eV Core-core repulsion = 18052.663204 eV Total energy + Delta-G solvation = -2983.795477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.07565 -39.41065 -37.22339 -35.52774 -33.93354 -32.14483 -30.39028 -28.32814 -27.05912 -26.41954 -24.50091 -24.28315 -22.64943 -21.95110 -20.81943 -20.13716 -18.48584 -17.51130 -16.99501 -16.78315 -16.62119 -16.34643 -15.96119 -15.53507 -15.20078 -14.68538 -14.38616 -14.25329 -13.86052 -13.52151 -13.35168 -13.29486 -13.07189 -12.93259 -12.70821 -12.49394 -12.40748 -12.25192 -12.16650 -11.71012 -11.65004 -11.48830 -11.39809 -11.30118 -11.29270 -11.10946 -10.86349 -10.55262 -10.50263 -9.16722 -8.20288 -6.31096 1.39554 1.40765 1.52135 2.40744 3.07597 3.12922 3.23580 3.61869 3.66435 3.83930 3.90194 3.98103 4.03944 4.19675 4.24287 4.32780 4.39607 4.51704 4.58466 4.61960 4.75087 4.79144 4.86310 4.86712 4.91615 4.94730 4.99471 5.04206 5.07081 5.09135 5.10663 5.16524 5.19255 5.28033 5.34745 5.42070 5.53072 5.59614 5.76923 5.86919 6.00884 6.14856 6.29198 6.53153 6.86027 7.38235 8.91553 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.004155 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.766543 B = 6737.521864 C = 7889.823521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.091 4.091 11 C 0.077 3.923 12 N -0.680 5.680 13 C 0.111 3.889 14 H 0.071 0.929 15 C -0.133 4.133 16 C -0.146 4.146 17 C -0.138 4.138 18 C -0.123 4.123 19 C -0.097 4.097 20 H 0.096 0.904 21 C -0.145 4.145 22 C 0.048 3.952 23 O -0.405 6.405 24 C 0.052 3.948 25 H 0.263 0.737 26 H -0.011 1.011 27 H -0.010 1.010 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.027 0.973 32 H 0.342 0.658 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.264 -21.379 -0.790 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.129 4.129 11 C -0.052 4.052 12 N -0.310 5.310 13 C 0.001 3.999 14 H 0.089 0.911 15 C -0.153 4.153 16 C -0.184 4.184 17 C -0.175 4.175 18 C -0.161 4.161 19 C -0.117 4.117 20 H 0.114 0.886 21 C -0.183 4.183 22 C -0.028 4.028 23 O -0.324 6.324 24 C -0.024 4.024 25 H 0.072 0.928 26 H 0.008 0.992 27 H 0.008 0.992 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.161 0.839 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.115 0.885 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.443 -21.347 -0.115 21.623 hybrid contribution -0.533 1.415 -0.822 1.721 sum 2.910 -19.932 -0.937 20.165 Atomic orbital electron populations 1.70092 1.07771 1.27726 1.51805 1.25963 0.95755 1.03299 0.94736 0.85470 0.78681 0.78523 0.78523 1.19716 1.20669 1.18850 1.21704 0.93469 0.92508 1.50384 0.92424 1.18955 0.94407 0.93158 0.94584 1.21349 0.97907 0.93215 1.00404 1.21821 0.93768 0.90080 0.99550 1.60548 1.23301 1.01615 1.45545 1.21449 0.95571 0.88242 0.94643 0.91105 1.23258 0.97383 0.97710 0.96955 1.23015 0.97923 0.97233 1.00204 1.22840 1.00433 0.95358 0.98893 1.22823 0.98067 0.96303 0.98862 1.22654 0.95740 0.98966 0.94300 0.88615 1.22887 0.95892 1.02619 0.96895 1.23171 0.94012 0.97718 0.87948 1.88789 1.56434 1.69714 1.17508 1.23647 0.88391 0.99941 0.90416 0.92794 0.99215 0.99179 0.93423 0.93266 0.92540 0.95435 0.83863 0.88696 0.91230 0.92785 0.89704 0.91288 0.90313 0.89834 0.90963 0.90056 0.93214 0.89102 0.88514 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 2 C 0.00 0.00 5.46 84.65 0.46 0.47 16 3 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.54 -31.42 9.11 25.60 0.23 -31.19 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.09 -3.74 5.46 30.59 0.17 -3.58 16 11 C 0.08 2.53 5.42 86.30 0.47 2.99 16 12 N -0.68 -17.40 4.74 -491.58 -2.33 -19.72 16 13 C 0.11 2.28 1.56 44.91 0.07 2.35 16 14 H 0.07 1.61 7.48 -2.38 -0.02 1.60 16 15 C -0.13 -2.37 2.89 -10.26 -0.03 -2.40 16 16 C -0.15 -3.01 6.09 31.18 0.19 -2.82 16 17 C -0.14 -2.22 8.09 31.18 0.25 -1.97 16 18 C -0.12 -1.79 6.68 31.12 0.21 -1.58 16 19 C -0.10 -1.83 2.86 -9.49 -0.03 -1.86 16 20 H 0.10 1.56 7.34 -2.39 -0.02 1.54 16 21 C -0.15 -2.96 6.50 31.59 0.21 -2.75 16 22 C 0.05 1.03 7.70 72.35 0.56 1.58 16 23 O -0.40 -10.00 11.52 -148.98 -1.72 -11.72 16 24 C 0.05 1.07 6.79 72.67 0.49 1.57 16 25 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 26 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 27 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 28 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.06 1.94 7.91 -2.39 -0.02 1.92 16 31 H 0.03 0.91 6.68 -2.39 -0.02 0.90 16 32 H 0.34 8.31 7.53 -89.69 -0.68 7.63 16 33 H 0.09 1.62 8.02 -2.39 -0.02 1.60 16 34 H 0.07 1.60 7.98 -2.39 -0.02 1.58 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.20 8.10 -2.39 -0.02 1.18 16 40 H 0.07 1.77 7.47 -2.39 -0.02 1.75 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.06 1.44 6.35 -2.39 -0.02 1.42 16 Total: -1.00 -64.22 348.59 1.92 -62.30 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.26 Total: 17.07 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 3.40 Total: -37.62 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -2.04 Total: -76.80 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -1.72 Total: -11.72 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.22 1.92 -62.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711831304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.156 kcal (2) G-P(sol) polarization free energy of solvation -64.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds