Wall clock time and date at job start Mon Mar 30 2020 07:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99902 * 2 1 4 4 H 1.48503 * 109.47064 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47324 * 300.00581 * 3 2 1 6 6 H 1.48501 * 109.46930 * 60.00417 * 3 2 1 7 7 C 1.37880 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00060 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99926 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47059 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47049 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47085 * 179.97438 * 11 10 9 13 13 C 1.46906 * 111.00035 * 180.02562 * 12 11 10 14 14 H 1.08993 * 109.47029 * 325.00040 * 13 12 11 15 15 C 1.53005 * 109.46836 * 205.00015 * 13 12 11 16 16 C 1.53780 * 113.60771 * 159.13707 * 15 13 12 17 17 C 1.53961 * 87.01788 * 220.04795 * 16 15 13 18 18 C 1.53778 * 113.61303 * 61.53318 * 15 13 12 19 19 C 1.52997 * 109.47286 * 85.00125 * 13 12 11 20 20 H 1.09003 * 111.01967 * 57.23061 * 19 13 12 21 21 C 1.55566 * 111.22545 * 292.92808 * 19 13 12 22 22 C 1.54383 * 102.27674 * 207.98163 * 21 19 13 23 23 O 1.43235 * 107.58532 * 21.35887 * 22 21 19 24 24 C 1.43645 * 109.97529 * 1.70714 * 23 22 21 25 25 H 0.97000 * 120.00179 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.46853 * 60.00478 * 9 7 2 27 27 H 1.09001 * 109.47182 * 300.00310 * 9 7 2 28 28 H 1.09004 * 109.46999 * 60.00098 * 10 9 7 29 29 H 1.09001 * 109.47147 * 300.00596 * 10 9 7 30 30 H 1.09004 * 109.47082 * 60.00219 * 11 10 9 31 31 H 1.09001 * 109.47690 * 300.00334 * 11 10 9 32 32 H 1.00901 * 111.00059 * 303.95422 * 12 11 10 33 33 H 1.08992 * 112.85126 * 290.33216 * 15 13 12 34 34 H 1.09000 * 113.61878 * 334.56177 * 16 15 13 35 35 H 1.08999 * 113.61413 * 105.47604 * 16 15 13 36 36 H 1.09000 * 113.53447 * 270.81740 * 17 16 15 37 37 H 1.08994 * 113.74415 * 139.94486 * 17 16 15 38 38 H 1.08998 * 113.61147 * 254.52210 * 18 15 13 39 39 H 1.09002 * 113.61737 * 25.42710 * 18 15 13 40 40 H 1.09007 * 110.84061 * 89.78331 * 21 19 13 41 41 H 1.09002 * 111.01266 * 326.26329 * 21 19 13 42 42 H 1.08995 * 109.83335 * 261.84022 * 22 21 19 43 43 H 1.08997 * 109.90193 * 140.90890 * 22 21 19 44 44 H 1.09002 * 110.30923 * 94.49115 * 24 23 22 45 45 H 1.09000 * 110.31166 * 216.56243 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4349 -6.1036 -0.0005 13 6 1.7346 -7.3950 -0.0005 14 1 0.8217 -7.3132 0.5893 15 6 2.6411 -8.4667 0.6085 16 6 1.8782 -9.6987 1.1233 17 6 2.8429 -9.6947 2.3232 18 6 3.0265 -8.1889 2.0711 19 6 1.3804 -7.7831 -1.4374 20 1 2.2725 -7.8245 -2.0625 21 6 0.3199 -6.8157 -2.0370 22 6 -0.3997 -7.7142 -3.0657 23 8 -0.1682 -9.0762 -2.6874 24 6 0.6068 -9.1249 -1.4790 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6044 0.8895 29 1 2.8720 -3.6043 -0.8905 30 1 0.8534 -5.0451 -0.8897 31 1 0.8539 -5.0446 0.8903 32 1 3.0692 -6.0366 -0.7823 33 1 3.4909 -8.7137 -0.0276 34 1 0.8433 -9.4897 1.3945 35 1 1.9803 -10.5746 0.4827 36 1 3.7478 -10.2789 2.1560 37 1 2.3615 -9.9227 3.2741 38 1 4.0543 -7.8477 2.1945 39 1 2.3061 -7.5663 2.6018 40 1 0.8006 -5.9703 -2.5295 41 1 -0.3738 -6.4720 -1.2697 42 1 0.0046 -7.5332 -4.0616 43 1 -1.4693 -7.5048 -3.0573 44 1 -0.0488 -9.2106 -0.6123 45 1 1.3035 -9.9626 -1.5098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711831306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:24 Heat of formation + Delta-G solvation = -49.923489 kcal Electronic energy + Delta-G solvation = -21018.828667 eV Core-core repulsion = 18035.793237 eV Total energy + Delta-G solvation = -2983.035430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.27178 -38.48473 -36.28757 -33.80126 -32.20362 -30.78191 -29.70959 -27.33582 -25.60814 -25.33781 -23.24544 -22.58149 -21.71724 -20.90236 -19.81249 -19.36979 -16.77809 -16.53140 -16.26719 -15.61445 -15.04998 -14.93399 -14.55636 -14.45383 -14.12016 -13.63797 -13.49207 -13.00661 -12.53681 -12.42014 -12.25541 -11.90499 -11.85295 -11.64987 -11.41493 -11.31363 -11.16762 -10.87419 -10.79523 -10.61487 -10.56197 -10.45407 -10.24696 -10.09498 -9.68518 -9.62120 -9.31481 -9.03058 -8.34795 -8.08285 -5.99853 -4.01771 3.31055 3.38577 3.43022 3.75079 4.17719 4.33616 4.44234 4.47222 4.66259 4.77083 4.78681 4.90810 5.01023 5.07805 5.18359 5.33609 5.35477 5.36228 5.47919 5.54227 5.64502 5.69305 5.70977 5.75431 5.77259 5.82530 5.86340 5.90329 5.95387 6.08645 6.10751 6.24894 6.33735 6.49361 6.72336 6.78169 6.87050 7.13772 7.35487 7.63096 7.68761 7.83425 8.00662 8.44246 9.05722 9.62421 11.11601 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020321 B = 0.003989 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.525258 B = 7017.270219 C = 8101.591821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.049 3.951 12 N -0.678 5.678 13 C 0.109 3.891 14 H 0.078 0.922 15 C -0.098 4.098 16 C -0.139 4.139 17 C -0.148 4.148 18 C -0.115 4.115 19 C -0.150 4.150 20 H 0.085 0.915 21 C -0.154 4.154 22 C 0.051 3.949 23 O -0.390 6.390 24 C 0.061 3.939 25 H 0.259 0.741 26 H 0.013 0.987 27 H 0.015 0.985 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.337 0.663 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.612 -20.259 -0.860 20.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.144 4.144 11 C -0.080 4.080 12 N -0.307 5.307 13 C -0.002 4.002 14 H 0.096 0.904 15 C -0.117 4.117 16 C -0.177 4.177 17 C -0.186 4.186 18 C -0.153 4.153 19 C -0.170 4.170 20 H 0.104 0.896 21 C -0.192 4.192 22 C -0.026 4.026 23 O -0.310 6.310 24 C -0.016 4.016 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.154 0.846 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.476 -20.281 -0.278 20.434 hybrid contribution 0.123 1.230 -0.885 1.520 sum 2.600 -19.051 -1.164 19.263 Atomic orbital electron populations 1.69974 1.06059 1.26434 1.51156 1.25026 0.94834 0.99252 0.95388 0.86555 0.80164 0.83849 0.77559 1.19724 1.21060 1.21009 1.21299 0.93080 0.91067 1.50171 0.92659 1.19060 0.94007 0.91443 0.97007 1.21611 0.99141 0.93093 1.00603 1.22390 0.94475 0.90777 1.00322 1.60636 1.19814 1.00791 1.49440 1.21536 0.96508 0.89881 0.92249 0.90374 1.22506 0.98212 0.94258 0.96679 1.23067 0.98834 0.97929 0.97823 1.22904 0.99504 0.97917 0.98244 1.22667 1.02009 0.94982 0.95611 1.23739 0.98869 0.95260 0.99168 0.89643 1.23404 0.98091 0.98674 0.98995 1.23139 0.99988 0.81306 0.98145 1.88371 1.74059 1.25723 1.42816 1.23465 0.93255 0.97459 0.87374 0.93109 0.96896 0.96675 0.92692 0.93799 0.94633 0.91797 0.84572 0.89675 0.90213 0.91737 0.90631 0.91812 0.91616 0.90076 0.89576 0.90007 0.91463 0.91480 0.92086 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.16 5.41 -26.73 -0.14 -2.30 16 11 C 0.05 0.79 5.21 -3.83 -0.02 0.77 16 12 N -0.68 -9.05 6.03 -106.73 -0.64 -9.69 16 13 C 0.11 1.20 1.57 -67.71 -0.11 1.10 16 14 H 0.08 0.94 7.60 -51.93 -0.39 0.55 16 15 C -0.10 -0.95 3.18 -89.81 -0.29 -1.23 16 16 C -0.14 -1.17 5.69 -25.82 -0.15 -1.32 16 17 C -0.15 -1.28 8.09 -25.82 -0.21 -1.48 16 18 C -0.12 -1.19 7.44 -25.92 -0.19 -1.38 16 19 C -0.15 -1.57 2.59 -88.23 -0.23 -1.80 16 20 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 21 C -0.15 -1.77 4.59 -24.64 -0.11 -1.89 16 22 C 0.05 0.57 7.80 37.88 0.30 0.87 16 23 O -0.39 -4.94 11.36 -35.23 -0.40 -5.34 16 24 C 0.06 0.64 5.64 38.18 0.22 0.85 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.57 4.51 -51.93 -0.23 0.33 16 31 H 0.06 1.09 8.06 -51.93 -0.42 0.68 16 32 H 0.34 4.33 8.47 -39.29 -0.33 4.00 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.68 7.55 -51.93 -0.39 0.29 16 35 H 0.06 0.49 7.54 -51.93 -0.39 0.10 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.09 1.04 7.36 -51.93 -0.38 0.66 16 41 H 0.08 1.00 7.27 -51.93 -0.38 0.62 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.61 7.15 -51.93 -0.37 0.24 16 45 H 0.08 0.77 7.37 -51.93 -0.38 0.38 16 LS Contribution 344.84 15.07 5.20 5.20 Total: -1.00 -29.83 344.84 -9.91 -39.74 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.29 Total: 0.58 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -1.49 Total: -20.92 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.09 Total: -35.98 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.40 Total: -5.34 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.83 -9.91 -39.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711831306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.187 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds