Wall clock time and date at job start Mon Mar 30 2020 07:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99902 * 2 1 4 4 H 1.48503 * 109.47064 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47324 * 300.00581 * 3 2 1 6 6 H 1.48501 * 109.46930 * 60.00417 * 3 2 1 7 7 C 1.37880 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00060 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99926 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47059 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47049 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47085 * 179.97438 * 11 10 9 13 13 C 1.46906 * 111.00035 * 180.02562 * 12 11 10 14 14 H 1.08993 * 109.47029 * 325.00040 * 13 12 11 15 15 C 1.53005 * 109.46836 * 205.00015 * 13 12 11 16 16 C 1.53780 * 113.60771 * 159.13707 * 15 13 12 17 17 C 1.53961 * 87.01788 * 220.04795 * 16 15 13 18 18 C 1.53778 * 113.61303 * 61.53318 * 15 13 12 19 19 C 1.52997 * 109.47286 * 85.00125 * 13 12 11 20 20 H 1.09003 * 111.01967 * 57.23061 * 19 13 12 21 21 C 1.55566 * 111.22545 * 292.92808 * 19 13 12 22 22 C 1.54383 * 102.27674 * 207.98163 * 21 19 13 23 23 O 1.43235 * 107.58532 * 21.35887 * 22 21 19 24 24 C 1.43645 * 109.97529 * 1.70714 * 23 22 21 25 25 H 0.97000 * 120.00179 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.46853 * 60.00478 * 9 7 2 27 27 H 1.09001 * 109.47182 * 300.00310 * 9 7 2 28 28 H 1.09004 * 109.46999 * 60.00098 * 10 9 7 29 29 H 1.09001 * 109.47147 * 300.00596 * 10 9 7 30 30 H 1.09004 * 109.47082 * 60.00219 * 11 10 9 31 31 H 1.09001 * 109.47690 * 300.00334 * 11 10 9 32 32 H 1.00901 * 111.00059 * 303.95422 * 12 11 10 33 33 H 1.08992 * 112.85126 * 290.33216 * 15 13 12 34 34 H 1.09000 * 113.61878 * 334.56177 * 16 15 13 35 35 H 1.08999 * 113.61413 * 105.47604 * 16 15 13 36 36 H 1.09000 * 113.53447 * 270.81740 * 17 16 15 37 37 H 1.08994 * 113.74415 * 139.94486 * 17 16 15 38 38 H 1.08998 * 113.61147 * 254.52210 * 18 15 13 39 39 H 1.09002 * 113.61737 * 25.42710 * 18 15 13 40 40 H 1.09007 * 110.84061 * 89.78331 * 21 19 13 41 41 H 1.09002 * 111.01266 * 326.26329 * 21 19 13 42 42 H 1.08995 * 109.83335 * 261.84022 * 22 21 19 43 43 H 1.08997 * 109.90193 * 140.90890 * 22 21 19 44 44 H 1.09002 * 110.30923 * 94.49115 * 24 23 22 45 45 H 1.09000 * 110.31166 * 216.56243 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4349 -6.1036 -0.0005 13 6 1.7346 -7.3950 -0.0005 14 1 0.8217 -7.3132 0.5893 15 6 2.6411 -8.4667 0.6085 16 6 1.8782 -9.6987 1.1233 17 6 2.8429 -9.6947 2.3232 18 6 3.0265 -8.1889 2.0711 19 6 1.3804 -7.7831 -1.4374 20 1 2.2725 -7.8245 -2.0625 21 6 0.3199 -6.8157 -2.0370 22 6 -0.3997 -7.7142 -3.0657 23 8 -0.1682 -9.0762 -2.6874 24 6 0.6068 -9.1249 -1.4790 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6044 0.8895 29 1 2.8720 -3.6043 -0.8905 30 1 0.8534 -5.0451 -0.8897 31 1 0.8539 -5.0446 0.8903 32 1 3.0692 -6.0366 -0.7823 33 1 3.4909 -8.7137 -0.0276 34 1 0.8433 -9.4897 1.3945 35 1 1.9803 -10.5746 0.4827 36 1 3.7478 -10.2789 2.1560 37 1 2.3615 -9.9227 3.2741 38 1 4.0543 -7.8477 2.1945 39 1 2.3061 -7.5663 2.6018 40 1 0.8006 -5.9703 -2.5295 41 1 -0.3738 -6.4720 -1.2697 42 1 0.0046 -7.5332 -4.0616 43 1 -1.4693 -7.5048 -3.0573 44 1 -0.0488 -9.2106 -0.6123 45 1 1.3035 -9.9626 -1.5098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711831306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:24 Heat of formation + Delta-G solvation = -67.735338 kcal Electronic energy + Delta-G solvation = -21019.601047 eV Core-core repulsion = 18035.793237 eV Total energy + Delta-G solvation = -2983.807810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16167 -39.31074 -37.51330 -35.58966 -33.80037 -32.07688 -30.80572 -28.65024 -26.92816 -26.25168 -24.47457 -23.75677 -22.88390 -22.15382 -21.11931 -20.17055 -18.48374 -17.63800 -17.48567 -16.59325 -16.46749 -15.99507 -15.82042 -15.77246 -15.21878 -14.85131 -14.51282 -14.32788 -13.87196 -13.60214 -13.50001 -13.22440 -13.13044 -12.81845 -12.58934 -12.46820 -12.42882 -12.36501 -12.12166 -12.10806 -11.72202 -11.52618 -11.41777 -11.30818 -11.15961 -10.95177 -10.79591 -10.56079 -10.49229 -9.20445 -8.20679 -6.31426 1.39409 1.39787 1.53221 2.40536 2.88327 3.12664 3.16155 3.45370 3.58253 3.91600 3.92388 3.99399 4.07338 4.16338 4.21089 4.27095 4.33436 4.39151 4.48669 4.56669 4.66564 4.75624 4.77971 4.80976 4.85289 4.93596 4.98942 5.00203 5.03687 5.05917 5.13228 5.16434 5.23643 5.26284 5.28984 5.48770 5.53189 5.73369 5.76306 5.86374 5.99946 6.12989 6.28503 6.54436 6.85894 7.38013 8.91329 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020321 B = 0.003989 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.525258 B = 7017.270219 C = 8101.591821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.026 3.974 10 C -0.092 4.092 11 C 0.064 3.936 12 N -0.677 5.677 13 C 0.114 3.886 14 H 0.068 0.932 15 C -0.094 4.094 16 C -0.132 4.132 17 C -0.141 4.141 18 C -0.123 4.123 19 C -0.141 4.141 20 H 0.092 0.908 21 C -0.156 4.156 22 C 0.050 3.950 23 O -0.408 6.408 24 C 0.062 3.938 25 H 0.263 0.737 26 H -0.008 1.008 27 H -0.011 1.011 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.343 0.657 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.884 -21.280 -1.182 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.130 4.130 11 C -0.065 4.065 12 N -0.306 5.306 13 C 0.004 3.996 14 H 0.086 0.914 15 C -0.113 4.113 16 C -0.170 4.170 17 C -0.178 4.178 18 C -0.161 4.161 19 C -0.161 4.161 20 H 0.111 0.889 21 C -0.193 4.193 22 C -0.026 4.026 23 O -0.328 6.328 24 C -0.014 4.014 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.007 0.993 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.161 0.839 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.759 -21.323 -0.600 21.660 hybrid contribution -0.297 1.536 -0.769 1.743 sum 3.462 -19.787 -1.369 20.134 Atomic orbital electron populations 1.70099 1.07773 1.27667 1.51868 1.25968 0.95755 1.03315 0.94748 0.85417 0.79096 0.78840 0.77813 1.18639 1.20291 1.20378 1.21734 0.93492 0.92478 1.50276 0.92377 1.18960 0.94406 0.93139 0.94631 1.21360 0.97940 0.93200 1.00456 1.22063 0.94291 0.90068 1.00055 1.60555 1.19329 1.00865 1.49889 1.21521 0.96310 0.89025 0.92733 0.91421 1.22505 0.98367 0.94263 0.96146 1.23035 0.98545 0.97641 0.97746 1.22885 1.00030 0.96374 0.98556 1.22665 1.01071 0.96206 0.96162 1.23650 0.98817 0.95174 0.98498 0.88935 1.23360 0.98280 0.98782 0.98889 1.23173 1.00236 0.80834 0.98345 1.88351 1.74514 1.26209 1.43679 1.23560 0.93375 0.97662 0.86839 0.92800 0.98997 0.99310 0.93352 0.93212 0.94229 0.92878 0.83899 0.88817 0.90377 0.90181 0.89508 0.91501 0.92322 0.91780 0.90293 0.91152 0.90668 0.91208 0.91742 0.88180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.09 -3.75 5.41 30.59 0.17 -3.59 16 11 C 0.06 2.11 5.21 86.30 0.45 2.56 16 12 N -0.68 -17.55 6.03 -491.57 -2.96 -20.51 16 13 C 0.11 2.39 1.57 44.91 0.07 2.46 16 14 H 0.07 1.59 7.60 -2.39 -0.02 1.57 16 15 C -0.09 -1.64 3.18 -10.27 -0.03 -1.67 16 16 C -0.13 -1.91 5.69 31.18 0.18 -1.73 16 17 C -0.14 -2.13 8.09 31.18 0.25 -1.88 16 18 C -0.12 -2.42 7.44 31.12 0.23 -2.19 16 19 C -0.14 -2.74 2.59 -9.25 -0.02 -2.76 16 20 H 0.09 1.71 8.12 -2.39 -0.02 1.69 16 21 C -0.16 -3.49 4.59 31.95 0.15 -3.34 16 22 C 0.05 1.09 7.80 72.45 0.56 1.65 16 23 O -0.41 -9.66 11.36 -148.98 -1.69 -11.35 16 24 C 0.06 1.16 5.64 72.65 0.41 1.57 16 25 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 26 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 27 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 30 H 0.04 1.28 4.51 -2.39 -0.01 1.26 16 31 H 0.05 1.86 8.06 -2.39 -0.02 1.84 16 32 H 0.34 8.33 8.47 -89.69 -0.76 7.57 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.18 7.55 -2.39 -0.02 1.16 16 35 H 0.08 0.95 7.54 -2.39 -0.02 0.93 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 40 H 0.08 1.88 7.36 -2.38 -0.02 1.86 16 41 H 0.07 1.73 7.27 -2.39 -0.02 1.71 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.06 1.16 7.15 -2.39 -0.02 1.15 16 45 H 0.10 1.53 7.37 -2.39 -0.02 1.52 16 Total: -1.00 -63.89 344.84 1.09 -62.80 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.18 Total: 17.26 kcal Atomic # 6 Polarization: -41.17 SS G_CDS: 3.26 Total: -37.91 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -2.68 Total: -77.40 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -1.69 Total: -11.35 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -63.89 1.09 -62.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711831306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.940 kcal (2) G-P(sol) polarization free energy of solvation -63.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds