Wall clock time and date at job start Mon Mar 30 2020 07:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99847 * 2 1 4 4 H 1.48500 * 109.47525 * 90.00324 * 3 2 1 5 5 H 1.48504 * 109.46813 * 210.00093 * 3 2 1 6 6 H 1.48498 * 109.47123 * 329.99647 * 3 2 1 7 7 C 1.37873 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99765 * 187.95355 * 7 2 1 9 9 C 1.50692 * 120.00183 * 7.94825 * 7 2 1 10 10 C 1.53004 * 115.54969 * 38.81583 * 9 7 2 11 11 N 1.46902 * 109.47170 * 174.53154 * 10 9 7 12 12 C 1.46894 * 110.99781 * 172.60304 * 11 10 9 13 13 C 1.53002 * 108.85592 * 293.69516 * 12 11 10 14 14 O 1.42904 * 109.46962 * 304.11286 * 13 12 11 15 15 C 1.50476 * 108.87734 * 175.23291 * 12 11 10 16 16 C 1.54240 * 108.52494 * 333.36630 * 15 12 11 17 17 C 1.45537 * 112.40794 * 280.01706 * 16 15 12 18 18 C 1.54240 * 112.40607 * 61.93675 * 17 16 15 19 19 C 1.50476 * 108.51636 * 280.00578 * 18 17 16 20 20 C 1.54066 * 108.88212 * 52.25595 * 12 11 10 21 21 C 1.53004 * 117.50197 * 253.11297 * 9 7 2 22 22 C 1.52998 * 60.00001 * 252.50738 * 21 9 7 23 23 H 0.97004 * 119.99831 * 354.99104 * 1 2 3 24 24 H 1.08998 * 109.47227 * 294.53294 * 10 9 7 25 25 H 1.09007 * 109.46777 * 54.53586 * 10 9 7 26 26 H 1.00900 * 111.00067 * 296.55398 * 11 10 9 27 27 H 1.08996 * 109.46631 * 64.10677 * 13 12 11 28 28 H 1.09001 * 109.47589 * 184.10966 * 13 12 11 29 29 H 0.96701 * 113.99731 * 179.97438 * 14 13 12 30 30 H 1.09000 * 109.63021 * 93.08440 * 15 12 11 31 31 H 1.09004 * 109.62820 * 213.65911 * 15 12 11 32 32 H 1.09002 * 108.89272 * 159.25839 * 16 15 12 33 33 H 1.09004 * 108.89145 * 40.77241 * 16 15 12 34 34 H 1.08994 * 108.89555 * 301.18341 * 17 16 15 35 35 H 1.08999 * 108.81875 * 182.63435 * 17 16 15 36 36 H 1.09004 * 109.63045 * 160.30032 * 18 17 16 37 37 H 1.08998 * 109.63414 * 39.71624 * 18 17 16 38 38 H 1.08998 * 108.87525 * 333.37837 * 19 18 17 39 39 H 1.09000 * 108.87964 * 214.92961 * 19 18 17 40 40 H 1.08995 * 108.81735 * 199.92184 * 20 12 11 41 41 H 1.09004 * 108.81280 * 318.31155 * 20 12 11 42 42 H 1.09001 * 117.49813 * 359.97438 * 21 9 7 43 43 H 1.08995 * 117.50283 * 145.01905 * 21 9 7 44 44 H 1.09000 * 117.49622 * 252.50831 * 22 21 9 45 45 H 1.08998 * 117.50037 * 107.48976 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0768 -1.1985 0.1289 9 6 1.2619 -2.4927 -0.1816 10 6 0.1134 -2.4609 -1.1919 11 7 -0.4289 -3.8158 -1.3598 12 6 -1.6430 -3.7982 -2.1864 13 6 -2.7453 -3.0539 -1.4302 14 8 -2.9441 -3.6657 -0.1541 15 6 -2.0903 -5.2150 -2.4248 16 6 -0.8584 -6.1391 -2.3374 17 6 -0.0722 -6.1327 -3.5622 18 6 0.5011 -4.7378 -3.8855 19 6 -0.5834 -3.9111 -4.5216 20 6 -1.3429 -3.0463 -3.4972 21 6 1.0981 -3.3901 1.0468 22 6 2.0671 -3.7887 -0.0680 23 1 -0.4850 0.8369 0.0733 24 1 -0.6718 -1.7977 -0.8287 25 1 0.4827 -2.0960 -2.1504 26 1 0.2645 -4.4371 -1.7489 27 1 -2.4522 -2.0131 -1.2924 28 1 -3.6720 -3.0977 -2.0025 29 1 -3.6302 -3.2443 0.3815 30 1 -2.8179 -5.5019 -1.6656 31 1 -2.5390 -5.2957 -3.4149 32 1 -1.1941 -7.1569 -2.1386 33 1 -0.2280 -5.8096 -1.5115 34 1 -0.7047 -6.4548 -4.3893 35 1 0.7527 -6.8370 -3.4541 36 1 1.3385 -4.8372 -4.5763 37 1 0.8362 -4.2575 -2.9663 38 1 -1.2914 -4.5773 -5.0145 39 1 -0.1357 -3.2584 -5.2710 40 1 -2.2846 -2.7224 -3.9403 41 1 -0.7417 -2.1664 -3.2681 42 1 1.5277 -3.0412 1.9859 43 1 0.1719 -3.9578 1.1354 44 1 1.7784 -4.6188 -0.7128 45 1 3.1340 -3.7020 0.1377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713490976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:39 Heat of formation + Delta-G solvation = 1.026764 kcal Electronic energy + Delta-G solvation = -22958.115992 eV Core-core repulsion = 19977.289931 eV Total energy + Delta-G solvation = -2980.826061 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.22258 -36.44413 -36.04013 -33.34114 -32.16572 -31.99419 -30.16752 -26.11218 -25.88520 -24.92390 -23.82394 -21.89505 -20.96992 -20.01279 -18.87329 -17.89641 -16.71867 -16.53811 -15.62657 -15.22339 -14.72493 -14.40447 -14.10321 -13.57746 -13.37910 -13.15600 -13.01469 -12.73484 -12.66879 -11.90036 -11.77808 -11.56712 -11.37971 -11.21225 -10.97747 -10.77869 -10.58642 -10.48557 -10.29184 -10.14690 -10.05414 -10.00945 -9.87733 -9.63456 -9.26598 -9.09966 -8.87975 -8.52225 -7.88637 -7.19145 -5.98133 -4.02551 3.27890 3.34946 3.39248 4.39198 4.59904 4.90894 5.03165 5.08046 5.12180 5.16192 5.42265 5.48409 5.50032 5.63242 5.70450 5.73888 5.81604 5.86230 6.00468 6.11240 6.17271 6.23853 6.31960 6.36519 6.39748 6.44698 6.47167 6.49877 6.57051 6.66766 6.72151 6.80967 6.87994 6.90952 7.13850 7.34301 7.44193 7.66188 7.71636 8.07002 8.16334 8.25681 8.45234 8.60033 8.96553 9.57102 11.02887 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020566 B = 0.006955 C = 0.006720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.158495 B = 4024.961709 C = 4165.889763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.488 4.488 8 H 0.058 0.942 9 C 0.057 3.943 10 C 0.089 3.911 11 N -0.678 5.678 12 C 0.126 3.874 13 C 0.090 3.910 14 O -0.548 6.548 15 C -0.098 4.098 16 C -0.136 4.136 17 C -0.114 4.114 18 C -0.142 4.142 19 C -0.108 4.108 20 C -0.157 4.157 21 C -0.184 4.184 22 C -0.218 4.218 23 H 0.259 0.741 24 H 0.119 0.881 25 H 0.011 0.989 26 H 0.337 0.663 27 H 0.054 0.946 28 H 0.029 0.971 29 H 0.365 0.635 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.614 -7.980 -7.288 12.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.133 4.133 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.526 4.526 8 H 0.076 0.924 9 C 0.056 3.944 10 C -0.038 4.038 11 N -0.319 5.319 12 C 0.034 3.966 13 C 0.012 3.988 14 O -0.351 6.351 15 C -0.135 4.135 16 C -0.174 4.174 17 C -0.152 4.152 18 C -0.180 4.180 19 C -0.145 4.145 20 C -0.197 4.197 21 C -0.222 4.222 22 C -0.255 4.255 23 H 0.069 0.931 24 H 0.137 0.863 25 H 0.029 0.971 26 H 0.167 0.833 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.210 0.790 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.603 -8.241 -6.993 12.174 hybrid contribution 0.426 1.499 -0.666 1.695 sum -5.178 -6.742 -7.660 11.443 Atomic orbital electron populations 1.69842 1.05796 1.26311 1.49934 1.24954 0.94866 0.98876 0.94569 0.86600 0.79945 0.83399 0.78152 1.20691 1.19897 1.21177 1.20621 0.93283 0.89407 1.49274 0.92384 1.18964 0.93442 0.88142 0.93860 1.21812 0.98837 0.87690 0.95487 1.61359 1.07091 1.12392 1.51034 1.20459 0.92084 0.94368 0.89706 1.22222 0.95475 0.96685 0.84463 1.86590 1.61132 1.58368 1.28995 1.21324 0.97719 0.93894 1.00613 1.20565 0.98242 0.99245 0.99357 1.20505 0.99258 0.96899 0.98505 1.21755 0.98019 0.95916 1.02317 1.21208 0.97349 0.98259 0.97731 1.22682 1.00571 1.00324 0.96095 1.22798 0.99109 1.06781 0.93480 1.22833 0.96008 1.01500 1.05187 0.93102 0.86314 0.97130 0.83341 0.92791 0.95302 0.79048 0.90897 0.92847 0.92861 0.89017 0.92797 0.92657 0.92162 0.89664 0.92571 0.92731 0.92647 0.90137 0.91838 0.90065 0.91776 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.13 10.82 55.43 0.60 -23.53 16 2 C 0.07 1.88 5.28 -17.82 -0.09 1.79 16 3 Si 0.89 20.98 29.55 -169.99 -5.02 15.95 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.49 -13.48 9.03 -34.45 -0.31 -13.79 16 8 H 0.06 1.61 7.83 -52.48 -0.41 1.20 16 9 C 0.06 1.43 2.33 -155.66 -0.36 1.07 16 10 C 0.09 2.06 3.77 -3.82 -0.01 2.05 16 11 N -0.68 -13.11 3.69 -100.68 -0.37 -13.49 16 12 C 0.13 2.10 0.45 -132.31 -0.06 2.04 16 13 C 0.09 1.52 5.38 37.16 0.20 1.72 16 14 O -0.55 -9.52 12.54 -35.23 -0.44 -9.96 16 15 C -0.10 -1.44 5.01 -27.34 -0.14 -1.58 16 16 C -0.14 -1.94 5.16 -29.60 -0.15 -2.09 16 17 C -0.11 -1.47 5.24 -29.60 -0.16 -1.63 16 18 C -0.14 -2.03 5.58 -27.34 -0.15 -2.18 16 19 C -0.11 -1.50 5.31 -27.43 -0.15 -1.64 16 20 C -0.16 -2.49 4.68 -25.61 -0.12 -2.61 16 21 C -0.18 -4.45 9.65 -26.73 -0.26 -4.71 16 22 C -0.22 -4.93 9.57 -26.73 -0.26 -5.19 16 23 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 24 H 0.12 3.03 4.08 -51.93 -0.21 2.82 16 25 H 0.01 0.26 6.15 -51.92 -0.32 -0.06 16 26 H 0.34 6.22 0.99 -39.29 -0.04 6.18 16 27 H 0.05 1.04 6.55 -51.93 -0.34 0.70 16 28 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.36 4.82 9.12 45.56 0.42 5.24 16 30 H 0.07 1.13 7.06 -51.93 -0.37 0.76 16 31 H 0.05 0.71 6.98 -51.93 -0.36 0.35 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.52 5.32 -51.93 -0.28 1.25 16 34 H 0.05 0.63 7.47 -51.93 -0.39 0.25 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.45 4.19 -51.93 -0.22 1.23 16 38 H 0.06 0.70 6.63 -51.93 -0.34 0.36 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.79 7.98 -51.93 -0.41 0.37 16 41 H 0.08 1.49 5.41 -51.93 -0.28 1.21 16 42 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 43 H 0.08 1.97 7.77 -51.93 -0.40 1.57 16 44 H 0.06 1.33 6.39 -51.93 -0.33 1.00 16 45 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 319.54 15.07 4.82 4.82 Total: -1.00 -28.40 319.54 -8.82 -37.23 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -6.38 Total: 15.75 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -2.02 Total: -26.76 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.23 Total: -37.02 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.44 Total: -9.96 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.40 -8.82 -37.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713490976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.252 kcal (2) G-P(sol) polarization free energy of solvation -28.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds