Wall clock time and date at job start Mon Mar 30 2020 07:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99847 * 2 1 4 4 H 1.48500 * 109.47525 * 90.00324 * 3 2 1 5 5 H 1.48504 * 109.46813 * 210.00093 * 3 2 1 6 6 H 1.48498 * 109.47123 * 329.99647 * 3 2 1 7 7 C 1.37873 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99765 * 187.95355 * 7 2 1 9 9 C 1.50692 * 120.00183 * 7.94825 * 7 2 1 10 10 C 1.53004 * 115.54969 * 38.81583 * 9 7 2 11 11 N 1.46902 * 109.47170 * 174.53154 * 10 9 7 12 12 C 1.46894 * 110.99781 * 172.60304 * 11 10 9 13 13 C 1.53002 * 108.85592 * 293.69516 * 12 11 10 14 14 O 1.42904 * 109.46962 * 304.11286 * 13 12 11 15 15 C 1.50476 * 108.87734 * 175.23291 * 12 11 10 16 16 C 1.54240 * 108.52494 * 333.36630 * 15 12 11 17 17 C 1.45537 * 112.40794 * 280.01706 * 16 15 12 18 18 C 1.54240 * 112.40607 * 61.93675 * 17 16 15 19 19 C 1.50476 * 108.51636 * 280.00578 * 18 17 16 20 20 C 1.54066 * 108.88212 * 52.25595 * 12 11 10 21 21 C 1.53004 * 117.50197 * 253.11297 * 9 7 2 22 22 C 1.52998 * 60.00001 * 252.50738 * 21 9 7 23 23 H 0.97004 * 119.99831 * 354.99104 * 1 2 3 24 24 H 1.08998 * 109.47227 * 294.53294 * 10 9 7 25 25 H 1.09007 * 109.46777 * 54.53586 * 10 9 7 26 26 H 1.00900 * 111.00067 * 296.55398 * 11 10 9 27 27 H 1.08996 * 109.46631 * 64.10677 * 13 12 11 28 28 H 1.09001 * 109.47589 * 184.10966 * 13 12 11 29 29 H 0.96701 * 113.99731 * 179.97438 * 14 13 12 30 30 H 1.09000 * 109.63021 * 93.08440 * 15 12 11 31 31 H 1.09004 * 109.62820 * 213.65911 * 15 12 11 32 32 H 1.09002 * 108.89272 * 159.25839 * 16 15 12 33 33 H 1.09004 * 108.89145 * 40.77241 * 16 15 12 34 34 H 1.08994 * 108.89555 * 301.18341 * 17 16 15 35 35 H 1.08999 * 108.81875 * 182.63435 * 17 16 15 36 36 H 1.09004 * 109.63045 * 160.30032 * 18 17 16 37 37 H 1.08998 * 109.63414 * 39.71624 * 18 17 16 38 38 H 1.08998 * 108.87525 * 333.37837 * 19 18 17 39 39 H 1.09000 * 108.87964 * 214.92961 * 19 18 17 40 40 H 1.08995 * 108.81735 * 199.92184 * 20 12 11 41 41 H 1.09004 * 108.81280 * 318.31155 * 20 12 11 42 42 H 1.09001 * 117.49813 * 359.97438 * 21 9 7 43 43 H 1.08995 * 117.50283 * 145.01905 * 21 9 7 44 44 H 1.09000 * 117.49622 * 252.50831 * 22 21 9 45 45 H 1.08998 * 117.50037 * 107.48976 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0768 -1.1985 0.1289 9 6 1.2619 -2.4927 -0.1816 10 6 0.1134 -2.4609 -1.1919 11 7 -0.4289 -3.8158 -1.3598 12 6 -1.6430 -3.7982 -2.1864 13 6 -2.7453 -3.0539 -1.4302 14 8 -2.9441 -3.6657 -0.1541 15 6 -2.0903 -5.2150 -2.4248 16 6 -0.8584 -6.1391 -2.3374 17 6 -0.0722 -6.1327 -3.5622 18 6 0.5011 -4.7378 -3.8855 19 6 -0.5834 -3.9111 -4.5216 20 6 -1.3429 -3.0463 -3.4972 21 6 1.0981 -3.3901 1.0468 22 6 2.0671 -3.7887 -0.0680 23 1 -0.4850 0.8369 0.0733 24 1 -0.6718 -1.7977 -0.8287 25 1 0.4827 -2.0960 -2.1504 26 1 0.2645 -4.4371 -1.7489 27 1 -2.4522 -2.0131 -1.2924 28 1 -3.6720 -3.0977 -2.0025 29 1 -3.6302 -3.2443 0.3815 30 1 -2.8179 -5.5019 -1.6656 31 1 -2.5390 -5.2957 -3.4149 32 1 -1.1941 -7.1569 -2.1386 33 1 -0.2280 -5.8096 -1.5115 34 1 -0.7047 -6.4548 -4.3893 35 1 0.7527 -6.8370 -3.4541 36 1 1.3385 -4.8372 -4.5763 37 1 0.8362 -4.2575 -2.9663 38 1 -1.2914 -4.5773 -5.0145 39 1 -0.1357 -3.2584 -5.2710 40 1 -2.2846 -2.7224 -3.9403 41 1 -0.7417 -2.1664 -3.2681 42 1 1.5277 -3.0412 1.9859 43 1 0.1719 -3.9578 1.1354 44 1 1.7784 -4.6188 -0.7128 45 1 3.1340 -3.7020 0.1377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713490976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:38 Heat of formation + Delta-G solvation = -16.125706 kcal Electronic energy + Delta-G solvation = -22958.859779 eV Core-core repulsion = 19977.289931 eV Total energy + Delta-G solvation = -2981.569848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.53458 -38.26328 -37.34389 -34.69490 -34.16459 -33.20836 -31.64030 -27.88746 -27.36343 -26.36940 -25.35616 -23.11977 -22.87120 -21.16102 -20.74129 -19.31764 -18.34807 -18.04475 -17.08278 -16.63992 -16.56411 -15.91170 -15.49888 -15.14298 -14.69825 -14.63664 -14.36474 -14.24811 -13.85279 -13.48051 -13.24438 -13.09869 -12.87310 -12.85469 -12.72449 -12.52326 -12.25865 -11.98873 -11.88850 -11.68786 -11.27686 -11.20443 -11.15413 -11.07467 -10.84789 -10.82395 -10.63565 -10.44677 -9.82690 -8.77295 -8.03618 -6.16559 1.39472 1.41410 1.51283 2.41175 3.05211 3.32671 3.67131 3.75566 3.80206 3.94700 4.01452 4.23103 4.26333 4.35339 4.44946 4.49531 4.55077 4.59561 4.63284 4.76675 4.78780 4.83394 4.89613 4.97473 5.02919 5.10683 5.16149 5.23146 5.28040 5.31915 5.33784 5.34776 5.36078 5.45597 5.55751 5.63220 5.68128 5.72573 5.73706 6.21365 6.35917 6.64484 6.81698 6.97394 7.09068 7.45685 8.94841 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020566 B = 0.006955 C = 0.006720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.158495 B = 4024.961709 C = 4165.889763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.028 3.972 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.272 1.272 6 H -0.280 1.280 7 C -0.517 4.517 8 H 0.047 0.953 9 C 0.026 3.974 10 C 0.114 3.886 11 N -0.678 5.678 12 C 0.121 3.879 13 C 0.091 3.909 14 O -0.566 6.566 15 C -0.092 4.092 16 C -0.133 4.133 17 C -0.110 4.110 18 C -0.143 4.143 19 C -0.105 4.105 20 C -0.154 4.154 21 C -0.183 4.183 22 C -0.193 4.193 23 H 0.260 0.740 24 H 0.093 0.907 25 H -0.010 1.010 26 H 0.344 0.656 27 H 0.020 0.980 28 H 0.059 0.941 29 H 0.381 0.619 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.095 -9.255 -8.769 14.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.173 4.173 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.197 1.197 6 H -0.205 1.205 7 C -0.555 4.555 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.015 4.015 11 N -0.319 5.319 12 C 0.030 3.970 13 C 0.013 3.987 14 O -0.371 6.371 15 C -0.129 4.129 16 C -0.171 4.171 17 C -0.147 4.147 18 C -0.182 4.182 19 C -0.142 4.142 20 C -0.193 4.193 21 C -0.221 4.221 22 C -0.230 4.230 23 H 0.070 0.930 24 H 0.111 0.889 25 H 0.008 0.992 26 H 0.174 0.826 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.228 0.772 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.093 -9.527 -8.469 14.129 hybrid contribution 0.543 1.883 -0.172 1.968 sum -5.549 -7.644 -8.641 12.802 Atomic orbital electron populations 1.69987 1.06750 1.26981 1.49817 1.25639 0.95727 1.01761 0.94154 0.85650 0.78777 0.79620 0.78171 1.20306 1.19655 1.20514 1.20889 0.93106 0.91161 1.50378 0.93426 1.19171 0.94981 0.88331 0.94975 1.21313 0.97169 0.89345 0.93627 1.61313 1.08053 1.10126 1.52412 1.20636 0.90696 0.96044 0.89653 1.22234 0.96893 0.94788 0.84822 1.86537 1.62182 1.58792 1.29603 1.21285 0.97873 0.92161 1.01627 1.20524 0.97660 0.99837 0.99063 1.20472 0.99738 0.96051 0.98454 1.21746 0.98671 0.96695 1.01052 1.21209 0.97567 0.98365 0.97084 1.22614 1.00999 0.99320 0.96365 1.22657 0.99552 1.06846 0.93045 1.22803 0.95642 1.00692 1.03912 0.93041 0.88883 0.99204 0.82556 0.96130 0.92301 0.77232 0.91589 0.90532 0.91175 0.91773 0.90637 0.91579 0.90996 0.92866 0.90157 0.92439 0.91022 0.93734 0.92987 0.90257 0.89713 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.53 10.82 21.45 0.23 -50.30 16 2 C 0.03 1.53 5.28 84.65 0.45 1.98 16 3 Si 0.95 43.69 29.55 68.60 2.03 45.72 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.52 -29.37 9.03 25.60 0.23 -29.14 16 8 H 0.05 2.71 7.83 -2.91 -0.02 2.69 16 9 C 0.03 1.36 2.33 -52.93 -0.12 1.23 16 10 C 0.11 5.46 3.77 86.30 0.33 5.78 16 11 N -0.68 -26.38 3.69 -472.44 -1.75 -28.12 16 12 C 0.12 3.94 0.45 3.07 0.00 3.95 16 13 C 0.09 3.05 5.38 71.98 0.39 3.43 16 14 O -0.57 -19.53 12.54 -148.98 -1.87 -21.40 16 15 C -0.09 -2.48 5.01 30.20 0.15 -2.32 16 16 C -0.13 -3.43 5.16 28.74 0.15 -3.28 16 17 C -0.11 -2.46 5.24 28.74 0.15 -2.31 16 18 C -0.14 -3.80 5.58 30.20 0.17 -3.63 16 19 C -0.10 -2.67 5.31 30.14 0.16 -2.51 16 20 C -0.15 -4.73 4.68 31.32 0.15 -4.59 16 21 C -0.18 -9.04 9.65 30.59 0.30 -8.74 16 22 C -0.19 -8.77 9.57 30.59 0.29 -8.47 16 23 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 24 H 0.09 4.98 4.08 -2.39 -0.01 4.97 16 25 H -0.01 -0.51 6.15 -2.38 -0.01 -0.52 16 26 H 0.34 12.60 0.99 -89.69 -0.09 12.51 16 27 H 0.02 0.82 6.55 -2.39 -0.02 0.80 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.38 9.99 9.12 -74.06 -0.68 9.32 16 30 H 0.07 1.89 7.06 -2.39 -0.02 1.87 16 31 H 0.08 1.73 6.98 -2.38 -0.02 1.71 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 2.03 5.32 -2.38 -0.01 2.02 16 34 H 0.08 1.41 7.47 -2.39 -0.02 1.39 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.05 1.78 4.19 -2.39 -0.01 1.77 16 38 H 0.08 1.68 6.63 -2.39 -0.02 1.66 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 1.93 7.98 -2.39 -0.02 1.91 16 41 H 0.04 1.70 5.41 -2.39 -0.01 1.68 16 42 H 0.05 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.08 3.90 7.77 -2.39 -0.02 3.88 16 44 H 0.08 3.46 6.39 -2.39 -0.02 3.44 16 45 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -62.05 319.54 1.66 -60.39 By element: Atomic # 1 Polarization: 42.12 SS G_CDS: 0.23 Total: 42.35 kcal Atomic # 6 Polarization: -51.41 SS G_CDS: 2.78 Total: -48.63 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -1.51 Total: -78.43 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -1.87 Total: -21.40 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -62.05 1.66 -60.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713490976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.265 kcal (2) G-P(sol) polarization free energy of solvation -62.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds