Wall clock time and date at job start Mon Mar 30 2020 06:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99963 * 2 1 4 4 H 1.48497 * 109.47394 * 240.00302 * 3 2 1 5 5 H 1.48499 * 109.47408 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46707 * 120.00522 * 3 2 1 7 7 C 1.37874 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00426 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47192 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47067 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.47128 * 180.02562 * 11 10 9 13 13 C 1.50649 * 111.00456 * 61.90705 * 12 11 10 14 14 C 1.55842 * 101.02986 * 170.23859 * 13 12 11 15 15 C 1.55859 * 103.60401 * 327.61176 * 14 13 12 16 16 C 1.50653 * 110.99848 * 170.00022 * 12 11 10 17 17 C 1.52997 * 115.88372 * 63.34510 * 16 12 11 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 12 19 19 O 1.20826 * 119.99939 * 0.02562 * 18 17 16 20 20 O 1.34230 * 120.00046 * 179.97438 * 18 17 16 21 21 C 1.55855 * 101.02439 * 297.64686 * 16 12 11 22 22 C 1.54833 * 103.52191 * 327.00852 * 21 16 12 23 23 H 0.97003 * 119.99667 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47013 * 59.99473 * 9 7 2 25 25 H 1.08999 * 109.46688 * 300.00104 * 9 7 2 26 26 H 1.08999 * 109.47438 * 59.99897 * 10 9 7 27 27 H 1.08999 * 109.47523 * 299.99757 * 10 9 7 28 28 H 1.08993 * 109.47438 * 59.99939 * 11 10 9 29 29 H 1.09000 * 109.46856 * 299.99662 * 11 10 9 30 30 H 1.09001 * 115.87393 * 296.65164 * 13 12 11 31 31 H 1.09004 * 110.61410 * 85.51430 * 14 13 12 32 32 H 1.08999 * 110.61445 * 208.33545 * 14 13 12 33 33 H 1.09003 * 110.08576 * 241.11197 * 15 14 13 34 34 H 1.08997 * 111.59433 * 117.82353 * 15 14 13 35 35 H 1.09002 * 109.47153 * 59.99848 * 17 16 12 36 36 H 1.09001 * 109.46832 * 300.00039 * 17 16 12 37 37 H 0.96691 * 117.00026 * 180.02562 * 20 18 17 38 38 H 1.08994 * 110.61279 * 85.52001 * 21 16 12 39 39 H 1.09007 * 110.60618 * 208.49949 * 21 16 12 40 40 H 1.08996 * 110.61249 * 241.49619 * 22 21 16 41 41 H 1.08998 * 110.74608 * 118.57039 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9870 -0.0025 12 7 2.4349 -6.1036 -0.0031 13 6 3.2893 -6.0843 1.2376 14 6 4.0056 -7.4640 1.1278 15 6 2.9476 -8.3719 0.4311 16 6 1.7330 -7.4141 0.2405 17 6 0.7191 -7.8368 -0.8245 18 6 0.1077 -9.1592 -0.4393 19 8 0.4476 -9.7072 0.5825 20 8 -0.8153 -9.7279 -1.2307 21 6 1.1520 -7.1803 1.6677 22 6 2.2102 -6.2760 2.3457 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8902 25 1 0.6248 -2.5570 0.8897 26 1 2.8727 -3.6047 0.8877 27 1 2.8712 -3.6039 -0.8923 28 1 0.8533 -5.0442 -0.8921 29 1 0.8541 -5.0454 0.8878 30 1 3.9363 -5.2151 1.3561 31 1 4.8976 -7.3849 0.5064 32 1 4.2611 -7.8435 2.1171 33 1 2.6814 -9.2043 1.0825 34 1 3.3038 -8.7362 -0.5325 35 1 1.2224 -7.9360 -1.7862 36 1 -0.0640 -7.0824 -0.9003 37 1 -1.1790 -10.5759 -0.9418 38 1 0.1904 -6.6701 1.6117 39 1 1.0556 -8.1254 2.2022 40 1 2.6383 -6.7727 3.2163 41 1 1.7751 -5.3172 2.6276 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714124538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:48 Heat of formation + Delta-G solvation = -85.116486 kcal Electronic energy + Delta-G solvation = -21160.699212 eV Core-core repulsion = 18040.304605 eV Total energy + Delta-G solvation = -3120.394607 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.21341 -39.92303 -36.30422 -34.42903 -32.42377 -32.17978 -30.39113 -29.61357 -27.23186 -25.97009 -22.97101 -22.19336 -22.07549 -20.66178 -18.89493 -18.71137 -18.19488 -16.48334 -16.31432 -16.05485 -15.62719 -15.51275 -15.03661 -14.43195 -13.84305 -13.31386 -12.96782 -12.89634 -12.67785 -12.34501 -12.06910 -11.84031 -11.71866 -11.51810 -11.39667 -11.20643 -10.96538 -10.93977 -10.80870 -10.72684 -10.54682 -10.40342 -10.28430 -9.86522 -9.61751 -9.29534 -9.03731 -8.32479 -8.29352 -5.97839 -3.99853 2.06208 2.79337 3.34819 3.38990 3.41706 4.08498 4.44333 4.48374 4.52416 4.85730 5.02008 5.10224 5.24566 5.28409 5.33702 5.38026 5.38107 5.53704 5.60564 5.61792 5.76122 5.81531 5.96740 6.02336 6.05739 6.09629 6.26566 6.34197 6.37110 6.38708 6.40124 6.69955 6.79602 6.92270 7.20008 7.36837 7.70061 7.73627 7.85366 8.02542 8.45988 9.07102 9.64078 11.13559 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028221 B = 0.004204 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.937759 B = 6658.260640 C = 7240.254410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.104 4.104 11 C 0.029 3.971 12 N -0.484 5.484 13 C 0.049 3.951 14 C -0.114 4.114 15 C -0.103 4.103 16 C 0.077 3.923 17 C -0.084 4.084 18 C 0.484 3.516 19 O -0.509 6.509 20 O -0.518 6.518 21 C -0.141 4.141 22 C -0.152 4.152 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.013 0.987 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.118 0.882 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.409 0.591 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.979 -19.664 0.508 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.142 4.142 11 C -0.099 4.099 12 N -0.207 5.207 13 C -0.059 4.059 14 C -0.152 4.152 15 C -0.141 4.141 16 C -0.013 4.013 17 C -0.122 4.122 18 C 0.325 3.675 19 O -0.397 6.397 20 O -0.330 6.330 21 C -0.180 4.180 22 C -0.191 4.191 23 H 0.070 0.930 24 H 0.033 0.967 25 H 0.031 0.969 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.136 0.864 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.267 0.733 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.395 -19.244 0.084 19.393 hybrid contribution -0.462 0.502 0.969 1.185 sum 1.934 -18.742 1.053 18.871 Atomic orbital electron populations 1.69954 1.06057 1.26633 1.50985 1.25015 0.94827 0.99200 0.95384 0.86673 0.79594 0.83201 0.78619 1.20224 1.21324 1.20288 1.21214 0.92983 0.91077 1.50416 0.92783 1.19056 0.94003 0.91385 0.97004 1.21624 0.99137 0.92778 1.00633 1.22582 0.95011 0.91584 1.00675 1.67769 1.16775 1.00466 1.35694 1.24387 0.95280 0.97837 0.88393 1.22765 0.97960 0.94473 1.00022 1.22738 0.93925 0.96845 1.00547 1.23242 0.93130 0.92763 0.92128 1.20799 0.98955 0.91480 1.00918 1.23359 0.76117 0.87162 0.80819 1.90695 1.59707 1.63875 1.25411 1.84550 1.54262 1.40635 1.53578 1.23204 0.98514 1.00301 0.95953 1.23251 0.97043 1.00032 0.98779 0.93008 0.96674 0.96908 0.93524 0.92748 0.91317 0.93971 0.86444 0.91412 0.91582 0.90662 0.91722 0.86606 0.87105 0.73295 0.91872 0.90306 0.91445 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.10 -2.15 5.07 -26.73 -0.14 -2.28 16 11 C 0.03 0.50 4.33 -3.82 -0.02 0.49 16 12 N -0.48 -7.19 5.59 -198.37 -1.11 -8.30 16 13 C 0.05 0.68 4.25 -62.56 -0.27 0.41 16 14 C -0.11 -1.34 6.46 -23.69 -0.15 -1.50 16 15 C -0.10 -1.22 5.46 -23.68 -0.13 -1.35 16 16 C 0.08 0.98 0.71 -126.44 -0.09 0.89 16 17 C -0.08 -0.92 5.51 -27.88 -0.15 -1.07 16 18 C 0.48 5.15 8.04 36.01 0.29 5.44 16 19 O -0.51 -6.51 13.78 -18.75 -0.26 -6.77 16 20 O -0.52 -4.31 13.42 -39.26 -0.53 -4.83 16 21 C -0.14 -1.88 4.58 -24.24 -0.11 -1.99 16 22 C -0.15 -2.05 5.62 -24.24 -0.14 -2.19 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.95 6.62 -51.93 -0.34 0.60 16 27 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 1.17 7.57 -51.93 -0.39 0.78 16 29 H 0.04 0.73 4.87 -51.93 -0.25 0.48 16 30 H 0.12 1.68 7.01 -51.93 -0.36 1.32 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.70 7.82 -51.93 -0.41 0.29 16 33 H 0.07 0.92 6.78 -51.93 -0.35 0.57 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.11 1.20 7.46 -51.93 -0.39 0.81 16 37 H 0.41 1.64 9.10 45.56 0.41 2.05 16 38 H 0.06 0.88 7.18 -51.93 -0.37 0.51 16 39 H 0.08 1.06 6.78 -51.92 -0.35 0.71 16 40 H 0.07 0.81 7.82 -51.93 -0.41 0.41 16 41 H 0.07 1.08 7.38 -51.93 -0.38 0.70 16 LS Contribution 317.81 15.07 4.79 4.79 Total: -1.00 -32.04 317.81 -8.52 -40.55 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.68 Total: 0.39 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -1.45 Total: -16.25 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: -0.37 Total: -34.66 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.79 Total: -11.60 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.04 -8.52 -40.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714124538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.564 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds